Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g14910 Coffea canephora HOM05D001674 ORTHO05D008374 8.1e-120 433.7 215 100.0
Cc00_g02240 Coffea canephora HOM05D001674 ORTHO05D008374 2.9e-69 265.8 169 79.9
Glyma.06G199800 Glycine max HOM05D001674 ORTHO05D008374 3.7e-48 195.7 172 58.1
CSS0007026 Camellia sinensis var. sinensis HOM05D001674 ORTHO05D008374 6.4e-48 194.9 167 59.3
Lalb_Chr22g0355251 Lupinus albus HOM05D001674 ORTHO05D008374 1.4e-47 193.7 160 58.8
Dinv38776 Davidia involucrata HOM05D001674 ORTHO05D008374 2.4e-47 193.0 171 57.3
Nn4g23350 Nelumbo nucifera HOM05D001674 ORTHO05D008374 9.2e-47 191.0 170 55.3
Atru.chr9.282 Acer truncatum HOM05D001674 ORTHO05D008374 1.2e-46 190.7 176 55.1
Nitab4.5_0004511g0090 Nicotiana tabacum HOM05D001674 ORTHO05D008374 1.2e-46 190.7 161 60.2
Nitab4.5_0002881g0060 Nicotiana tabacum HOM05D001674 ORTHO05D008374 4.6e-46 188.7 161 59.0
Gohir.A03G069032 Gossypium hirsutum HOM05D001674 ORTHO05D008374 7.8e-46 188.0 172 57.0
TPR.G12256 Trifolium pratense HOM05D001674 ORTHO05D008374 1.3e-45 187.2 158 58.9
Lj9A469T59 Lonicera japonica HOM05D001674 ORTHO05D008374 2.3e-45 186.4 190 53.2
CANSAT80G0757 Cannabis sativa HOM05D001674 ORTHO05D008374 3.0e-45 186.0 167 55.1
Psat5g198440 Pisum sativum HOM05D001674 ORTHO05D008374 3.9e-45 185.7 158 58.2
RcHm_v2.0_Chr7g0182391 Rosa chinensis HOM05D001674 ORTHO05D008374 3.9e-45 185.7 155 60.0
BraA03t09697Z Brassica rapa HOM05D001674 ORTHO05D008374 5.0e-45 185.3 169 53.3
GSVIVG01007916001 Vitis vinifera HOM05D001674 ORTHO05D008374 5.0e-45 185.3 161 57.8
arahy.Tifrunner.gnm1.ann1.1X400K Arachis hypogaea HOM05D001674 ORTHO05D008374 6.6e-45 184.9 189 52.4
arahy.Tifrunner.gnm1.ann1.D3EHI2 Arachis hypogaea HOM05D001674 ORTHO05D008374 6.6e-45 184.9 189 52.4
COL.COLO4_36884 Corchorus olitorius HOM05D001674 ORTHO05D008374 6.6e-45 184.9 160 55.0
A03p03470 Brassica napus HOM05D001674 ORTHO05D008374 8.6e-45 184.5 169 53.3
BolC3t12927H Brassica oleracea HOM05D001674 ORTHO05D008374 1.1e-44 184.1 162 55.6
C03p03890 Brassica napus HOM05D001674 ORTHO05D008374 1.5e-44 183.7 169 52.1
Gohir.D03G095500 Gossypium hirsutum HOM05D001674 ORTHO05D008374 1.5e-44 183.7 164 57.3
Gorai.003G100200 Gossypium raimondii HOM05D001674 ORTHO05D008374 1.5e-44 183.7 164 57.9
Lj1g0003467 Lotus japonicus HOM05D001674 ORTHO05D008374 1.5e-44 183.7 156 57.1
Thecc.03G096600 Theobroma cacao HOM05D001674 ORTHO05D008374 1.5e-44 183.7 153 58.8
SalBow7G3861 Salvia bowleyana HOM05D001674 ORTHO05D008374 1.9e-44 183.3 162 55.6
TWI15G0866 Tripterygium wilfordii HOM05D001674 ORTHO05D008374 1.9e-44 183.3 160 58.8
FvH4_5g14341 Fragaria vesca HOM05D001674 ORTHO05D008374 2.5e-44 183.0 171 56.7
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.5e-44 183.0 171 56.7
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.5e-44 183.0 171 56.7
PGR083G1883 Punica granatum HOM05D001674 ORTHO05D008374 3.3e-44 182.6 170 52.9
Sopen03g034520 Solanum pennellii HOM05D001674 ORTHO05D008374 3.3e-44 182.6 161 57.8
TAR371G0783 Trochodendron aralioides HOM05D001674 ORTHO05D008374 4.3e-44 182.2 166 56.0
CAN.G479.34 Capsicum annuum HOM05D001674 ORTHO05D008374 5.6e-44 181.8 161 57.8
Prupe.5G200300 Prunus persica HOM05D001674 ORTHO05D008374 5.6e-44 181.8 157 58.6
AT5G07810 Arabidopsis thaliana HOM05D001674 ORTHO05D008374 1.6e-43 180.3 161 54.0
Carub.0006s0673 Capsella rubella HOM05D001674 ORTHO05D008374 2.8e-43 179.5 167 50.9
Thhalv10012481m.g Eutrema salsugineum HOM05D001674 ORTHO05D008374 2.8e-43 179.5 182 48.9
ATR0064G032 Amborella trichopoda HOM05D001674 ORTHO05D008374 3.6e-43 179.1 171 52.0
MD14G1208200 Malus domestica HOM05D001674 ORTHO05D008374 3.6e-43 179.1 154 59.7
Hma1.2p1_0322F.1_g124930 Hydrangea macrophylla HOM05D001674 ORTHO05D008374 6.2e-43 178.3 167 53.9
AL6G18150 Arabidopsis lyrata HOM05D001674 ORTHO05D008374 8.1e-43 177.9 168 50.0
Ciclev10018579m.g Citrus clementina HOM05D001674 ORTHO05D008374 8.1e-43 177.9 153 56.2
Manes.06G087800 Manihot esculenta HOM05D001674 ORTHO05D008374 8.1e-43 177.9 164 55.5
THA.LOC104818327 Tarenaya hassleriana HOM05D001674 ORTHO05D008374 1.1e-42 177.6 170 53.5
Sp6g35120 Schrenkiella parvula HOM05D001674 ORTHO05D008374 1.4e-42 177.2 160 54.4
Oeu032214.1 Olea europaea HOM05D001674 ORTHO05D008374 1.8e-42 176.8 168 56.0
Haze_07675 Corylus avellana HOM05D001674 ORTHO05D008374 2.3e-42 176.4 172 51.7
Cfa019293 Carpinus fangiana HOM05D001674 ORTHO05D008374 8.9e-42 174.5 161 54.7
Migut.D01671 Erythranthe guttata HOM05D001674 ORTHO05D008374 8.9e-42 174.5 176 51.1
Peaxi162Scf00201g00024 Petunia axillaris HOM05D001674 ORTHO05D008374 1.5e-41 173.7 163 55.8
Potri.012G067000 Populus trichocarpa HOM05D001674 ORTHO05D008374 2.0e-41 173.3 157 54.8
Cpa.g.sc94.1 Carica papaya HOM05D001674 ORTHO05D008374 2.6e-41 172.9 153 56.2
Phvul.009G190731 Phaseolus vulgaris HOM05D001674 ORTHO05D008374 2.6e-41 172.9 138 59.4
SGA_v2.0_scaffold65G22108 Striga asiatica HOM05D001674 ORTHO05D008374 2.6e-41 172.9 154 55.2
HanXRQChr14g0426861 Helianthus annuus HOM05D001674 ORTHO05D008374 5.8e-41 171.8 162 53.7
DCAR_026018 Daucus carota HOM05D001674 ORTHO05D008374 7.5e-41 171.4 178 52.2
Eucgr.B00565 Eucalyptus grandis HOM05D001674 ORTHO05D008374 1.7e-40 170.2 156 54.5
Sabra12G0048100 Salix brachista HOM05D001674 ORTHO05D008374 3.7e-40 169.1 157 53.5
unitig_0.g12 Utricularia gibba HOM05D001674 ORTHO05D008374 8.3e-40 167.9 176 48.3
Sc12g0006560 Simmondsia chinensis HOM05D001674 ORTHO05D008374 1.1e-39 167.5 158 53.2
MSTRG.9601 Avicennia marina HOM05D001674 ORTHO05D008374 1.4e-39 167.2 172 51.7
Lsat_1_v5_gn_5_21720 Lactuca sativa HOM05D001674 ORTHO05D008374 2.4e-39 166.4 148 56.1
Sed0002195 Sechium edule HOM05D001674 ORTHO05D008374 2.4e-39 166.4 147 57.8
Aa31LG3G18650 Aethionema arabicum HOM05D001674 ORTHO05D008374 9.2e-39 164.5 167 49.7
MELO3C017204.2 Cucumis melo HOM05D001674 ORTHO05D008374 2.1e-38 163.3 169 52.7
vmacro17585 Vaccinium macrocarpon HOM05D001674 ORTHO05D008374 2.1e-38 163.3 189 48.1
Ah.11g048050 Amaranthus hybridus HOM05D001674 ORTHO05D008374 4.6e-38 162.2 157 52.2
CsaV3_1G002690 Cucumis sativus L. HOM05D001674 ORTHO05D008374 4.6e-38 162.2 169 52.1
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 4.6e-38 162.2 213 45.1
ClCG06G015870 Citrullus lanatus HOM05D001674 ORTHO05D008374 6.0e-38 161.8 177 50.3
Hund09848 Selenicereus undatus HOM05D001674 ORTHO05D008374 1.0e-37 161.0 139 56.8
EL10Ac5g11090 Beta vulgaris HOM05D001674 ORTHO05D008374 1.7e-37 160.2 154 50.6
AUR62021607 Chenopodium quinoa HOM05D001674 ORTHO05D008374 8.6e-37 157.9 167 50.3
SEGI_38041 Sequoiadendron giganteum HOM05D001674 ORTHO05D008374 3.3e-36 156.0 151 51.7
Os07g0598300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008374 1.2e-35 154.1 146 52.7
Zm00001eb326710 Zea mays HOM05D001674 ORTHO05D008374 1.6e-35 153.7 172 47.1
AUR62008488 Chenopodium quinoa HOM05D001674 ORTHO05D008374 2.3e-34 149.8 177 44.1
PSO017G4168 Papaver somniferum HOM05D001674 ORTHO05D008374 2.2e-32 143.3 186 43.0
VMungo1309G0587 Vigna mungo HOM05D000002 ORTHO05D000001 4.9e-32 142.1 109 60.6
Pp3c1_13300 Physcomitrium patens HOM05D001674 ORTHO05D008374 2.4e-31 139.8 154 47.4
Pp3c1_13308 Physcomitrium patens HOM05D001674 ORTHO05D008374 2.4e-31 139.8 154 47.4
Aqoxy3G00457 Aquilegia oxysepala HOM05D001674 ORTHO05D008374 9.2e-31 137.9 163 46.0
Rhsim08G0149800 Rhododendron simsii HOM05D000001 ORTHO05D008374 2.1e-30 136.7 148 48.0
SMO358G0589 Selaginella moellendorffii HOM05D001674 ORTHO05D008374 3.5e-30 136.0 159 42.1
AagrBONN_evm.TU.Sc2ySwM_117.3709 Anthoceros agrestis HOM05D001674 ORTHO05D008374 8.6e-29 131.3 186 37.6
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.4e-18 97.4 130 42.3
PRCOL_00003770 Prasinoderma coloniale HOM05D001674 ORTHO05D008374 3.9e-13 79.3 168 29.2
MCO15G340 Micromonas commoda HOM05D001674 ORTHO05D008374 3.6e-11 72.8 122 35.2
Cre12.g494200 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008374 5.3e-10 68.9 69 50.7
CBR_g49703 Chara braunii HOM05D001674 ORTHO05D008374 2.6e-09 66.6 82 37.8
VMungo1309G2646 Vigna mungo HOM05D001674 ORTHO05D008374 1.6e-06 57.4 42 66.7


User provided reference genes

Program Settings