Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 1.7e-87 325.9 157 100.0
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 3.4e-67 258.5 155 82.6
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 5.8e-67 257.7 155 83.2
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 7.6e-67 257.3 155 81.9
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 7.6e-67 257.3 155 81.9
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 1.3e-66 256.5 155 81.9
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 2.2e-66 255.8 155 81.9
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 2.2e-66 255.8 155 81.9
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 2.9e-66 255.4 155 81.3
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 3.8e-66 255.0 155 81.3
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 4.9e-66 254.6 155 80.0
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 6.5e-66 254.2 155 81.3
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 6.5e-66 254.2 155 79.4
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 8.4e-66 253.8 155 81.3
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 8.4e-66 253.8 155 80.6
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 1.1e-65 253.4 155 80.0
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 1.1e-65 253.4 155 80.6
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 1.1e-65 253.4 155 80.0
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 1.4e-65 253.1 155 81.9
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 1.4e-65 253.1 155 81.3
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 1.9e-65 252.7 156 79.5
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 1.9e-65 252.7 155 80.0
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 1.9e-65 252.7 155 81.3
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 2.5e-65 252.3 155 80.6
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 5.5e-65 251.1 155 79.4
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 7.1e-65 250.8 155 80.0
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 1.2e-64 250.0 155 80.0
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 1.6e-64 249.6 155 80.0
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 2.1e-64 249.2 155 79.4
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 2.1e-64 249.2 155 80.0
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 2.1e-64 249.2 155 80.0
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 3.5e-64 248.4 155 79.4
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 3.5e-64 248.4 155 80.0
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 3.5e-64 248.4 155 80.0
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 6.0e-64 247.7 155 80.0
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 7.9e-64 247.3 155 80.0
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 7.9e-64 247.3 155 78.7
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 7.9e-64 247.3 155 78.7
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 1.0e-63 246.9 155 80.0
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.0e-63 246.9 155 80.0
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.0e-63 246.9 155 80.0
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 1.0e-63 246.9 155 80.0
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.3e-63 246.5 155 80.0
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 1.8e-63 246.1 155 78.7
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 1.8e-63 246.1 155 78.7
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 2.3e-63 245.7 155 77.4
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 2.3e-63 245.7 155 77.4
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 3.9e-63 245.0 155 78.1
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 3.9e-63 245.0 155 78.1
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 3.9e-63 245.0 155 76.8
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 5.1e-63 244.6 155 78.7
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 6.7e-63 244.2 155 78.1
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 6.7e-63 244.2 155 78.1
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 6.7e-63 244.2 156 76.3
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 6.7e-63 244.2 155 78.1
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 8.7e-63 243.8 155 78.7
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 1.1e-62 243.4 155 76.1
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 1.5e-62 243.0 155 78.7
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 1.5e-62 243.0 155 77.4
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 1.5e-62 243.0 155 77.4
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 1.5e-62 243.0 155 77.4
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 1.9e-62 242.7 155 78.7
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 1.9e-62 242.7 155 77.4
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 2.5e-62 242.3 155 75.5
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 2.5e-62 242.3 155 76.8
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 3.3e-62 241.9 155 77.4
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 4.3e-62 241.5 155 77.4
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 5.7e-62 241.1 155 76.8
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 7.4e-62 240.7 155 76.1
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 9.7e-62 240.4 155 75.5
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 9.7e-62 240.4 155 75.5
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 9.7e-62 240.4 155 75.5
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 2.1e-61 239.2 155 74.8
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 3.7e-61 238.4 154 76.6
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 3.7e-61 238.4 203 64.0
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 8.2e-61 237.3 163 74.8
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 1.4e-60 236.5 155 74.8
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 1.4e-60 236.5 155 74.8
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 1.4e-60 236.5 155 74.8
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 1.4e-60 236.5 155 74.8
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 4.1e-60 235.0 156 73.1
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 9.0e-60 233.8 180 66.1
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 1.2e-59 233.4 155 73.5
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 1.5e-59 233.0 155 76.1
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 1.5e-59 233.0 155 74.2
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 4.5e-59 231.5 155 71.6
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.0e-58 230.3 155 72.3
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 1.7e-58 229.6 155 71.0
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 1.7e-58 229.6 155 72.9
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 6.5e-58 227.6 155 72.3
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 9.3e-57 223.8 155 69.7
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 5.1e-55 218.0 147 72.8
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 1.1e-54 216.9 155 69.7
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 5.7e-54 214.5 166 64.5
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 3.7e-53 211.8 155 72.3
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 4.1e-52 208.4 268 47.8
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 6.5e-50 201.1 154 64.3
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 6.5e-50 201.1 152 63.8
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 1.1e-49 200.3 126 78.6
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 5.5e-49 198.0 155 62.6
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 1.4e-47 193.4 154 59.7
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 1.9e-41 172.9 154 53.2
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 2.5e-41 172.6 113 77.9
GSVIVG01027315001 Vitis vinifera HOM05D005108 ORTHO05D006171 1.3e-37 160.2 88 81.8
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 6.3e-29 131.3 94 71.3
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 5.3e-28 128.3 88 67.0
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 1.6e-27 126.7 77 75.3
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 3.7e-21 105.5 61 83.6
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 4.8e-21 105.1 61 82.0
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 3.1e-20 102.4 61 80.3
Cpa.g.c37237 Carica papaya HOM05D005108 ORTHO05D006171 6.8e-15 84.7 42 92.9
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.3e-13 80.5 42 88.1
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 2.8e-13 79.3 42 88.1
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 1.1e-12 77.4 41 87.8
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.1e-08 63.2 35 82.9
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.6e-06 56.2 33 78.8
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 9.8e-06 54.3 135 30.4


User provided reference genes

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