Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g06520 Coffea canephora HOM05D005108 ORTHO05D006171 4.6e-70 268.1 166 100.0
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 8.7e-37 157.5 131 79.4
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 4.1e-18 95.5 104 53.8
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 2.0e-17 93.2 132 50.8
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 5.9e-17 91.7 133 47.4
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 7.7e-17 91.3 114 48.2
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 7.7e-17 91.3 136 48.5
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 1.0e-16 90.9 131 48.1
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 1.0e-16 90.9 132 54.5
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 1.3e-16 90.5 137 46.7
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 1.7e-16 90.1 133 46.6
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 2.9e-16 89.4 111 51.4
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 5.0e-16 88.6 101 51.5
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 6.5e-16 88.2 114 49.1
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 8.5e-16 87.8 127 48.8
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 8.5e-16 87.8 132 46.2
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 1.1e-15 87.4 125 45.6
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 2.5e-15 86.3 45 93.3
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 2.5e-15 86.3 123 48.0
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 4.2e-15 85.5 116 48.3
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 4.2e-15 85.5 99 50.5
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 5.5e-15 85.1 112 50.0
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 5.5e-15 85.1 112 50.9
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 7.2e-15 84.7 132 45.5
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 9.4e-15 84.3 45 91.1
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 9.4e-15 84.3 45 91.1
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 9.4e-15 84.3 48 85.4
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 9.4e-15 84.3 106 47.2
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 1.2e-14 84.0 102 51.0
Lj7C491T1 Lonicera japonica HOM05D005108 ORTHO05D006171 1.6e-14 83.6 45 88.9
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 1.6e-14 83.6 44 93.2
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 1.6e-14 83.6 124 47.6
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 2.1e-14 83.2 45 88.9
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 2.1e-14 83.2 45 88.9
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 2.7e-14 82.8 44 88.6
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 3.6e-14 82.4 46 87.0
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 3.6e-14 82.4 101 52.5
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 4.6e-14 82.0 45 88.9
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 4.6e-14 82.0 44 90.9
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 6.1e-14 81.6 134 53.7
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 7.9e-14 81.3 45 84.4
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 7.9e-14 81.3 45 86.7
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 7.9e-14 81.3 45 86.7
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 1.0e-13 80.9 111 46.8
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 1.4e-13 80.5 115 47.8
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 1.8e-13 80.1 46 82.6
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 2.3e-13 79.7 116 44.0
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 2.3e-13 79.7 46 80.4
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 3.0e-13 79.3 45 82.2
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 3.0e-13 79.3 45 82.2
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 3.9e-13 79.0 128 45.3
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 6.7e-13 78.2 121 41.3
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 6.7e-13 78.2 45 84.4
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 6.7e-13 78.2 112 48.2
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 6.7e-13 78.2 45 84.4
Cpa.g.sc1221.1 Carica papaya HOM05D005108 ORTHO05D006171 8.8e-13 77.8 43 86.0
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 8.8e-13 77.8 43 90.7
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 1.1e-12 77.4 116 43.1
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 1.1e-12 77.4 119 43.7
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 1.1e-12 77.4 45 82.2
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 1.1e-12 77.4 46 80.4
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 1.1e-12 77.4 101 50.5
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 1.1e-12 77.4 46 80.4
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 1.5e-12 77.0 131 43.5
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 2.0e-12 76.6 46 80.4
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 2.0e-12 76.6 46 80.4
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 2.0e-12 76.6 108 49.1
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 2.0e-12 76.6 43 83.7
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 2.5e-12 76.3 45 82.2
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 2.5e-12 76.3 43 86.0
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.5e-12 76.3 43 86.0
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.5e-12 76.3 43 86.0
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.5e-12 76.3 43 86.0
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 2.5e-12 76.3 45 82.2
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 3.3e-12 75.9 129 41.9
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 3.3e-12 75.9 43 86.0
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 4.3e-12 75.5 46 78.3
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 7.4e-12 74.7 43 83.7
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 7.4e-12 74.7 43 83.7
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 1.7e-11 73.6 45 75.6
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 1.7e-11 73.6 45 75.6
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 1.7e-11 73.6 45 75.6
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 2.2e-11 73.2 45 80.0
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 2.8e-11 72.8 45 80.0
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 3.7e-11 72.4 45 80.0
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 3.7e-11 72.4 45 80.0
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 3.7e-11 72.4 45 75.6
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 6.3e-11 71.6 43 76.7
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 1.1e-10 70.9 43 74.4
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.1e-10 70.9 45 77.8
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 1.1e-10 70.9 43 76.7
Atru.chr12.1230 Acer truncatum HOM05D005108 ORTHO05D006171 1.4e-10 70.5 46 73.9
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.4e-10 70.5 43 79.1
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 1.8e-10 70.1 45 71.1
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 2.4e-10 69.7 43 76.7
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 3.1e-10 69.3 43 72.1
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 6.9e-10 68.2 39 79.5
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 1.5e-09 67.0 43 72.1
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 2.0e-09 66.6 43 74.4
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 7.7e-09 64.7 35 88.6
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 7.7e-09 64.7 43 76.7
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 1.7e-08 63.5 42 66.7
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 6.5e-08 61.6 127 44.1
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 8.5e-08 61.2 121 39.7
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 1.1e-07 60.8 43 67.4
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.1e-07 60.8 43 72.1


User provided reference genes

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