Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g05010 Coffea canephora HOM05D001156 ORTHO05D001006 6.9e-69 263.8 133 100.0
Cc00_g05000 Coffea canephora HOM05D001156 ORTHO05D001006 1.3e-59 233.0 127 91.3
Cc11_g12810 Coffea canephora HOM05D001156 ORTHO05D001006 1.7e-59 232.6 127 91.3
Cc00_g05020 Coffea canephora HOM05D001156 ORTHO05D001006 1.2e-57 226.5 127 88.2
Dinv20649 Davidia involucrata HOM05D001156 ORTHO05D001006 3.5e-44 181.8 127 67.7
Dinv02539 Davidia involucrata HOM05D002723 ORTHO05D003240 3.2e-42 175.3 127 65.4
Actinidia19323 Actinidia chinensis HOM05D001156 ORTHO05D000024 6.1e-41 171.0 127 67.7
TWI14G1176 Tripterygium wilfordii HOM05D001156 ORTHO05D001006 8.0e-41 170.6 127 65.4
Hma1.2p1_0701F.1_g205880 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 1.0e-40 170.2 127 63.0
MD06G1173500 Malus domestica HOM05D001156 ORTHO05D001006 1.4e-40 169.9 127 64.6
CSS0016934 Camellia sinensis var. sinensis HOM05D001156 ORTHO05D001006 2.3e-40 169.1 127 63.8
Lju470C11T7 Lonicera japonica HOM05D001156 ORTHO05D001006 2.3e-40 169.1 127 63.8
QL10p015865 Quercus lobata HOM05D001156 ORTHO05D001006 2.3e-40 169.1 127 65.4
Eucgr.D02092 Eucalyptus grandis HOM05D001156 ORTHO05D001006 3.0e-40 168.7 127 63.8
Haze_07504 Corylus avellana HOM05D001156 ORTHO05D001006 3.9e-40 168.3 127 63.8
MD14G1180000 Malus domestica HOM05D001156 ORTHO05D001006 3.9e-40 168.3 127 63.8
Rhsim08G0172800 Rhododendron simsii HOM05D001156 ORTHO05D001006 1.1e-39 166.8 109 71.6
Solyc09g010030.3 Solanum lycopersicum HOM05D001156 ORTHO05D001006 2.6e-39 165.6 127 62.2
Sopen09g004770 Solanum pennellii HOM05D001156 ORTHO05D001006 5.7e-39 164.5 127 61.4
PGSC0003DMG400008867 Solanum tuberosum HOM05D001156 ORTHO05D001006 7.4e-39 164.1 127 61.4
PGR102G0269 Punica granatum HOM05D001156 ORTHO05D001006 9.7e-39 163.7 127 61.4
Thecc.03G013100 Theobroma cacao HOM05D001156 ORTHO05D001006 1.3e-38 163.3 127 64.6
TAR622G0652 Trochodendron aralioides HOM05D001156 ORTHO05D001006 1.3e-38 163.3 127 63.0
TWI39G0852 Tripterygium wilfordii HOM05D001156 ORTHO05D001006 1.7e-38 162.9 127 64.6
vmacro19392 Vaccinium macrocarpon HOM05D001156 ORTHO05D001006 3.7e-38 161.8 127 64.6
ECA246G0236 Erigeron canadensis HOM05D001156 ORTHO05D001006 6.3e-38 161.0 127 63.0
Nitab4.5_0002015g0010 Nicotiana tabacum HOM05D001156 ORTHO05D001006 6.3e-38 161.0 127 63.8
Prupe.5G173000 Prunus persica HOM05D001156 ORTHO05D001006 1.1e-37 160.2 127 63.8
CiPaw.11G025700 Carya illinoinensis HOM05D001156 ORTHO05D001006 1.8e-37 159.5 127 63.8
Nitab4.5_0001875g0090 Nicotiana tabacum HOM05D001156 ORTHO05D001006 3.1e-37 158.7 127 60.6
Duzib205G0148 Durio zibethinus HOM05D001156 ORTHO05D001006 4.1e-37 158.3 127 61.4
Nn4g22755 Nelumbo nucifera HOM05D001156 ORTHO05D001006 4.1e-37 158.3 127 62.2
Peaxi162Scf00047g02451 Petunia axillaris HOM05D003092 ORTHO05D003977 5.3e-37 157.9 127 63.0
HanXRQChr05g0156251 Helianthus annuus HOM05D001156 ORTHO05D001006 7.0e-37 157.5 127 63.0
Hma1.2p1_0176F.1_g077370 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 7.0e-37 157.5 127 59.8
Cfa019137 Carpinus fangiana HOM05D001156 ORTHO05D001006 1.2e-36 156.8 127 60.6
Peaxi162Scf00047g02423 Petunia axillaris HOM05D001156 ORTHO05D001006 1.6e-36 156.4 127 63.0
TAR371G0150 Trochodendron aralioides HOM05D001156 ORTHO05D001006 3.5e-36 155.2 127 59.8
Hma1.2p1_2409F.1_g321500 Hydrangea macrophylla HOM05D001156 ORTHO05D001006 5.9e-36 154.5 127 58.3
RcHm_v2.0_Chr7g0193501 Rosa chinensis HOM05D001156 ORTHO05D001006 1.0e-35 153.7 127 59.8
Nitab4.5_0005023g0040 Nicotiana tabacum HOM05D001156 ORTHO05D001006 1.7e-35 152.9 129 60.5
Oeu018233.1 Olea europaea HOM05D001156 ORTHO05D001006 2.9e-35 152.1 127 57.5
Gohir.A12G274300 Gossypium hirsutum HOM05D001156 ORTHO05D001006 5.0e-35 151.4 127 60.6
FAN13G2117 Fragaria x ananassa HOM05D001156 ORTHO05D001006 6.5e-35 151.0 127 60.6
Atru.chr9.2482 Acer truncatum HOM05D001156 ORTHO05D001006 8.5e-35 150.6 127 57.5
CANSAT80G0830 Cannabis sativa HOM05D001156 ORTHO05D001006 1.5e-34 149.8 127 59.1
SalBow6G0603 Salvia bowleyana HOM05D001156 ORTHO05D001006 1.5e-34 149.8 127 57.5
FAN08G0627 Fragaria x ananassa HOM05D001156 ORTHO05D001006 1.9e-34 149.4 127 59.8
ClCG06G015740 Citrullus lanatus HOM05D001156 ORTHO05D001006 2.5e-34 149.1 126 59.5
Ciclev10012849m.g Citrus clementina HOM05D001156 ORTHO05D001006 2.5e-34 149.1 127 58.3
CsaV3_3G028630 Cucumis sativus L. HOM05D001156 ORTHO05D001006 2.5e-34 149.1 127 59.1
MELO3C003920.2 Cucumis melo HOM05D001156 ORTHO05D001006 5.5e-34 147.9 127 58.3
FAN04G1980 Fragaria x ananassa HOM05D001156 ORTHO05D001006 5.5e-34 147.9 127 59.1
Manes.06G105200 Manihot esculenta HOM05D001156 ORTHO05D001006 7.2e-34 147.5 127 59.1
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.1e-33 146.0 128 60.2
Cpa.g.sc286.9 Carica papaya HOM05D001156 ORTHO05D001006 3.6e-33 145.2 127 58.3
FAN18G2375 Fragaria x ananassa HOM05D001156 ORTHO05D001006 3.6e-33 145.2 127 57.5
FvH4_5g05340 Fragaria vesca HOM05D001156 ORTHO05D001006 6.1e-33 144.4 127 57.5
Aqoxy2G02136 Aquilegia oxysepala HOM05D001156 ORTHO05D001006 8.0e-33 144.1 127 59.8
Sabra15G0101900 Salix brachista HOM05D001156 ORTHO05D001006 8.0e-33 144.1 115 60.9
Sed0004231 Sechium edule HOM05D001156 ORTHO05D001006 1.0e-32 143.7 127 58.3
Rhsim08G0172700 Rhododendron simsii HOM05D001156 ORTHO05D000024 1.4e-32 143.3 120 60.8
COL.COLO4_30043 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.8e-32 142.9 115 60.0
Nn4g24689 Nelumbo nucifera HOM05D001156 ORTHO05D001006 1.8e-32 142.9 109 62.4
Potri.015G077200 Populus trichocarpa HOM05D001156 ORTHO05D001006 1.8e-32 142.9 115 58.3
Lsat_1_v5_gn_5_14700 Lactuca sativa HOM05D001156 ORTHO05D001006 3.0e-32 142.1 128 60.2
MSTRG.17770 Avicennia marina HOM05D001156 ORTHO05D001006 6.8e-32 141.0 127 53.5
Gohir.D12G275000 Gossypium hirsutum HOM05D001156 ORTHO05D001006 1.2e-31 140.2 129 57.4
MBI10_g06740_MAGBIO Magnolia biondii HOM05D001156 ORTHO05D001006 4.4e-31 138.3 104 63.5
DCAR_026138 Daucus carota HOM05D001156 ORTHO05D001006 5.7e-31 137.9 127 55.9
Lalb_Chr18g0058261 Lupinus albus HOM05D001156 ORTHO05D001006 5.7e-31 137.9 107 62.6
Gorai.008G295500 Gossypium raimondii HOM05D001156 ORTHO05D001006 9.7e-31 137.1 129 56.6
Migut.N01934 Erythranthe guttata HOM05D001156 ORTHO05D001006 1.1e-29 133.7 127 52.8
THA.LOC104802756 Tarenaya hassleriana HOM05D001156 ORTHO05D001006 2.4e-29 132.5 104 64.4
THA.LOC104822304 Tarenaya hassleriana HOM05D001156 ORTHO05D001006 7.0e-29 131.0 127 57.5
Glyma.15G134800 Glycine max HOM05D001156 ORTHO05D001006 1.2e-28 130.2 107 58.9
HanXRQChr07g0196421 Helianthus annuus HOM05D001156 ORTHO05D001006 2.7e-28 129.0 127 56.7
Ca_00920_v3 Cicer arietinum L. HOM05D001156 ORTHO05D001006 4.5e-28 128.3 106 60.4
Phvul.006G124100 Phaseolus vulgaris HOM05D001156 ORTHO05D001006 7.7e-28 127.5 111 55.9
Manes.14G065500 Manihot esculenta HOM05D001156 ORTHO05D001006 1.3e-27 126.7 106 61.3
SGA_v2.0_scaffold62G21596 Striga asiatica HOM05D001156 ORTHO05D001006 1.7e-27 126.3 127 49.6
Glyma.09G029000 Glycine max HOM05D001156 ORTHO05D001006 2.9e-27 125.6 107 55.1
unitig_26.g10136 Utricularia gibba HOM05D001156 ORTHO05D001006 2.9e-27 125.6 104 58.7
Psat1g164640 Pisum sativum HOM05D001156 ORTHO05D001006 8.5e-27 124.0 106 60.4
Sc12g0005310 Simmondsia chinensis HOM05D001156 ORTHO05D001006 8.5e-27 124.0 127 50.4
PSO339G3237 Papaver somniferum HOM05D001156 ORTHO05D001006 1.5e-26 123.2 127 52.0
TPR.G8034 Trifolium pratense HOM05D001156 ORTHO05D001006 2.5e-26 122.5 127 51.2
Aqoxy6G01858 Aquilegia oxysepala HOM05D001156 ORTHO05D001006 3.2e-26 122.1 108 58.3
PSO384G4181 Papaver somniferum HOM05D001156 ORTHO05D001006 5.5e-26 121.3 127 52.0
CAN.G397.75 Capsicum annuum HOM05D001156 ORTHO05D001006 7.2e-26 120.9 120 50.0
PSO675G7370 Papaver somniferum HOM05D001156 ORTHO05D001006 9.4e-26 120.6 127 51.2
COL.COLO4_30231 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.1e-25 119.4 116 55.2
Medtr2g031760 Medicago truncatula HOM05D001156 ORTHO05D001006 2.7e-25 119.0 127 52.8
PSO541G0845 Papaver somniferum HOM05D001156 ORTHO05D001006 8.0e-25 117.5 127 50.4
VMungo0540G0215 Vigna mungo HOM05D001156 ORTHO05D001006 1.4e-24 116.7 111 53.2
Lj6g0014938 Lotus japonicus HOM05D001156 ORTHO05D001006 8.8e-24 114.0 107 55.1
Lj5E124G2 Lonicera japonica HOM05D001156 ORTHO05D001006 1.3e-22 110.2 83 62.7
Aa31LG5G16530 Aethionema arabicum HOM05D001156 ORTHO05D001006 2.4e-21 105.9 127 48.0
MELO3C034168.2 Cucumis melo HOM05D001156 ORTHO05D001006 4.1e-21 105.1 93 57.0
Sp3g04990 Schrenkiella parvula HOM05D001156 ORTHO05D001006 2.7e-20 102.4 127 48.8
HPP92_008592 Vanilla planifolia HOM05D001156 ORTHO05D001006 7.7e-20 100.9 128 41.4
Carub.0003s0547 Capsella rubella HOM05D001156 ORTHO05D001006 1.0e-19 100.5 127 48.0
arahy.Tifrunner.gnm1.ann1.7WX4FN Arachis hypogaea HOM05D001156 ORTHO05D001006 3.8e-19 98.6 97 53.6
Thhalv10021590m.g Eutrema salsugineum HOM05D001156 ORTHO05D001006 8.6e-19 97.4 127 46.5
ECA247G0150 Erigeron canadensis HOM05D001156 ORTHO05D001006 3.3e-18 95.5 100 52.0
GSVIVG01007737001 Vitis vinifera HOM05D001156 ORTHO05D001006 4.2e-18 95.1 82 52.4
AUR62030957 Chenopodium quinoa HOM05D001156 ORTHO05D001006 9.5e-18 94.0 104 47.1
A05p41960 Brassica napus HOM05D001156 ORTHO05D001006 2.1e-17 92.8 126 45.2
EL10Ac5g10741 Beta vulgaris HOM05D001156 ORTHO05D001006 2.8e-17 92.4 105 47.6
BraA05t22918Z Brassica rapa HOM05D001156 ORTHO05D001006 4.7e-17 91.7 126 44.4
C05p61210 Brassica napus HOM05D001156 ORTHO05D001006 8.0e-17 90.9 105 51.4
BolC5t34781H Brassica oleracea HOM05D001156 ORTHO05D001006 8.0e-17 90.9 105 51.4
AUR62008204 Chenopodium quinoa HOM05D001156 ORTHO05D001006 1.0e-16 90.5 89 49.4
AL3G16880 Arabidopsis lyrata HOM05D001156 ORTHO05D001006 1.8e-16 89.7 127 46.5
BcaC05g30063 Brassica carinata HOM05D001156 ORTHO05D001006 2.3e-16 89.4 105 51.4
AT3G06040 Arabidopsis thaliana HOM05D001156 ORTHO05D001006 3.0e-16 89.0 127 45.7
Ah.02g110810 Amaranthus hybridus HOM05D001156 ORTHO05D001006 4.0e-16 88.6 121 43.0
ATR0068G065 Amborella trichopoda HOM05D001156 ORTHO05D001006 1.2e-15 87.0 90 50.0
Cpa.g.sc153.25 Carica papaya HOM05D001156 ORTHO05D001006 7.5e-15 84.3 62 59.7
CARHR080540 Cardamine hirsuta HOM05D001156 ORTHO05D001006 1.7e-14 83.2 127 43.3
ATR0752G124 Amborella trichopoda HOM05D001156 ORTHO05D001006 6.3e-14 81.3 89 47.2
Nitab4.5_0000073g0570 Nicotiana tabacum HOM05D001156 ORTHO05D001006 6.3e-14 81.3 70 58.6
Zm00001eb235930 Zea mays HOM05D001156 ORTHO05D001006 1.8e-13 79.7 85 47.1
Gorai.011G186400 Gossypium raimondii HOM05D001156 ORTHO05D001006 4.1e-13 78.6 71 50.7
Gohir.D10G167100 Gossypium hirsutum HOM05D001156 ORTHO05D001006 5.4e-13 78.2 75 48.0
SHI16975 Sapria himalayana HOM05D001156 ORTHO05D001006 5.4e-13 78.2 126 40.5
Os02g0198900 Oryza sativa ssp. japonica HOM05D001156 ORTHO05D001006 1.9e-10 69.7 86 44.2
BolC3t16477H Brassica oleracea HOM05D001156 ORTHO05D043196 4.3e-10 68.6 98 45.9
SEGI_23469 Sequoiadendron giganteum HOM05D001156 ORTHO05D001006 2.8e-09 65.9 83 44.6
CDE05G0428 Ceratophyllum demersum HOM05D001156 ORTHO05D001006 8.0e-09 64.3 115 37.4
Zm00001eb205850 Zea mays HOM05D001156 ORTHO05D001006 9.8e-07 57.4 85 40.0


User provided reference genes

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