Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 2677.9 1334 100.0
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1891.3 1340 70.0
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1835.1 1327 68.9
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1819.7 1288 69.9
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1805.8 1347 67.9
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1802.7 1336 66.6
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1797.7 1340 67.9
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1795.4 1340 67.6
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1785.0 1340 67.2
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1783.8 1338 67.5
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1765.4 1342 66.4
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1765.4 1406 63.7
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1746.9 1328 65.6
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1735.3 1255 66.7
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1729.9 1483 60.8
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1727.6 1345 63.8
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1722.6 1328 65.5
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1719.9 1343 63.8
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1703.0 1344 63.2
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1700.3 1340 64.8
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1698.7 1343 63.7
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1687.9 1350 63.6
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1687.5 1328 63.1
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1678.7 1324 64.2
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1671.8 1341 62.2
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1661.0 1342 62.5
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1657.5 1342 62.7
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1656.0 1345 61.9
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1655.2 1345 61.7
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1652.9 1337 62.2
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1652.1 1345 61.7
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1651.3 1341 61.9
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1647.9 1348 62.4
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1644.4 1345 61.6
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1633.2 1334 61.9
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1632.8 1338 61.7
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1627.1 1381 60.5
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1625.1 1345 61.6
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1622.8 1336 60.4
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1622.8 1360 60.4
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1614.4 1342 61.3
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1611.3 1336 61.6
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1610.5 1327 61.1
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1604.7 1327 60.6
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1599.3 1342 60.4
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1593.6 1345 58.7
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1592.4 1343 59.9
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1587.8 1346 59.1
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1587.0 1338 59.3
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1584.7 1337 59.3
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1583.9 1336 59.7
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1582.8 1342 60.0
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1582.0 1342 59.2
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1578.1 1338 58.8
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1573.1 1339 59.8
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1572.8 1341 59.2
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1571.6 1339 59.1
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1565.4 1338 58.5
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1561.6 1328 61.1
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1559.3 1344 58.4
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1558.9 1338 58.8
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1558.1 1311 60.0
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1553.5 1323 58.7
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1553.1 1341 58.2
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1552.3 1342 58.5
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1551.6 1219 63.1
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1549.3 1219 63.3
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1543.1 1342 58.7
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1537.3 1257 61.8
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1530.0 1335 59.5
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1522.3 1327 58.7
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1515.0 1329 58.5
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1487.2 1327 58.2
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1465.7 1328 58.1
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1454.5 1346 56.0
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1418.3 1319 55.1
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1406.7 1328 56.7
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1397.9 1335 54.3
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1396.3 1344 53.9
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1395.6 1342 53.9
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1393.3 1296 54.4
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1378.2 1325 55.1
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1371.7 1346 53.8
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1365.5 1314 55.3
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1358.2 1311 54.6
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1357.0 1324 54.5
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1349.3 1326 54.4
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1349.3 1326 54.4
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1347.8 1324 54.2
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1279.2 1325 51.5
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1271.5 1332 51.1
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1270.0 909 66.4
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1254.6 1100 58.3
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1245.7 986 63.8
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1221.8 1350 47.8
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1210.7 860 70.2
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1184.9 990 60.8
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1133.2 1248 49.0
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.0e-276 957.6 1315 44.1
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 1.9e-275 953.4 1327 41.1
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 1.0e-257 894.4 1320 41.2
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 4.9e-255 885.6 1298 40.1
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 7.5e-232 808.5 1334 37.3
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 3.7e-231 806.2 1140 40.3
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 5.1e-228 795.8 970 45.2
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.0e-176 624.4 588 52.2
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 3.0e-172 610.5 481 62.4
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 6.8e-156 556.2 596 51.5
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 2.5e-126 458.0 1169 29.4
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.0e-107 395.2 328 58.2
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 4.4e-107 394.0 290 64.8
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.3e-101 375.9 339 56.0
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 4.9e-98 364.0 324 58.0
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.0e-95 354.8 1064 28.3
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 3.9e-79 301.2 264 61.4
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.6e-69 269.2 219 60.7
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 3.2e-65 255.0 310 45.8
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.3e-62 245.0 174 66.7
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 4.1e-60 238.0 239 50.2
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.4e-55 223.0 301 43.9
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.2e-51 209.9 151 68.9
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 5.0e-34 151.4 664 25.9
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 1.1e-33 150.2 119 61.3
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 5.5e-33 147.9 127 60.6
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 9.5e-25 120.6 122 49.2
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 2.0e-19 102.8 100 47.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.3e-18 99.4 74 63.5
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 9.5e-09 67.4 109 41.3
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.4e-07 63.5 69 55.1
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 9.8e-06 57.4 41 63.4


User provided reference genes

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