Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g02450 Coffea canephora HOM05D000032 ORTHO05D005297 2.9e-111 405.2 202 100.0
Cc00_g03670 Coffea canephora HOM05D000287 ORTHO05D005297 1.2e-93 346.7 203 88.2
Cc00_g12060 Coffea canephora HOM05D000032 ORTHO05D005297 1.0e-55 220.7 199 63.3
Cc02_g06020 Coffea canephora HOM05D000032 ORTHO05D005297 8.6e-55 217.6 198 62.1
MD01G1158100 Malus domestica HOM05D000032 ORTHO05D005297 7.1e-49 198.0 200 55.0
Dinv21780 Davidia involucrata HOM05D000032 ORTHO05D005297 1.2e-48 197.2 195 56.4
FvH4_7g25130 Fragaria vesca HOM05D000032 ORTHO05D005297 4.6e-48 195.3 208 53.8
vmacro06947 Vaccinium macrocarpon HOM05D000032 ORTHO05D005297 7.8e-48 194.5 205 55.1
Lj8C62T9 Lonicera japonica HOM05D000032 ORTHO05D005297 2.3e-47 193.0 197 55.3
Gorai.012G079600 Gossypium raimondii HOM05D000032 ORTHO05D005297 8.6e-47 191.0 197 51.8
Thecc.10G010800 Theobroma cacao HOM05D000032 ORTHO05D005297 8.6e-47 191.0 194 52.1
RcHm_v2.0_Chr1g0371021 Rosa chinensis HOM05D000032 ORTHO05D005297 1.5e-46 190.3 197 54.8
Duzib114G0601 Durio zibethinus HOM05D000032 ORTHO05D005297 2.5e-46 189.5 194 52.1
Potri.008G073100 Populus trichocarpa HOM05D000032 ORTHO05D005297 2.5e-46 189.5 194 52.1
FAN06G4119 Fragaria x ananassa HOM05D000032 ORTHO05D005297 5.6e-46 188.3 208 52.9
Eucgr.G03090 Eucalyptus grandis HOM05D000032 ORTHO05D005297 9.6e-46 187.6 202 52.5
FAN01G2718 Fragaria x ananassa HOM05D000032 ORTHO05D005297 9.6e-46 187.6 208 51.4
FAN03G1139 Fragaria x ananassa HOM05D000032 ORTHO05D005297 9.6e-46 187.6 218 52.3
PGR142G3724 Punica granatum HOM05D000032 ORTHO05D005297 9.6e-46 187.6 194 52.1
Gohir.A05G332100 Gossypium hirsutum HOM05D000032 ORTHO05D005297 2.1e-45 186.4 199 52.3
MSTRG.191 Avicennia marina HOM05D000032 ORTHO05D005297 3.6e-45 185.7 194 52.6
DCAR_011847 Daucus carota HOM05D000032 ORTHO05D005297 3.6e-45 185.7 201 49.8
COL.COLO4_25788 Corchorus olitorius HOM05D000032 ORTHO05D005297 1.8e-44 183.3 201 50.7
Ciclev10031038m.g Citrus clementina HOM05D000032 ORTHO05D005297 2.4e-44 183.0 199 51.8
arahy.Tifrunner.gnm1.ann1.B8N1RQ Arachis hypogaea HOM05D000032 ORTHO05D005297 4.0e-44 182.2 195 49.2
CSS0029822 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D005297 6.8e-44 181.4 195 52.3
Manes.07G074600 Manihot esculenta HOM05D000032 ORTHO05D005297 6.8e-44 181.4 204 50.0
TAR629G0475 Trochodendron aralioides HOM05D000032 ORTHO05D005297 8.9e-44 181.0 195 54.4
Cpa.g.sc19.129 Carica papaya HOM05D000032 ORTHO05D005297 1.2e-43 180.6 201 50.2
Aqoxy2G00796 Aquilegia oxysepala HOM05D000032 ORTHO05D005297 1.5e-43 180.3 195 52.3
Nn2g10990 Nelumbo nucifera HOM05D000032 ORTHO05D005297 1.5e-43 180.3 195 51.3
TWI73G0759 Tripterygium wilfordii HOM05D000032 ORTHO05D005297 2.0e-43 179.9 194 52.1
Oeu043173.1 Olea europaea HOM05D000032 ORTHO05D005297 2.6e-43 179.5 219 47.5
MD07G1226800 Malus domestica HOM05D000032 ORTHO05D005297 3.4e-43 179.1 200 54.5
Migut.F02079 Erythranthe guttata HOM05D000032 ORTHO05D005297 4.4e-43 178.7 194 50.0
CiPaw.02G195500 Carya illinoinensis HOM05D000032 ORTHO05D005297 7.6e-43 177.9 198 49.5
Lsat_1_v5_gn_9_60860 Lactuca sativa HOM05D000032 ORTHO05D005297 9.9e-43 177.6 196 50.0
Actinidia33906 Actinidia chinensis HOM05D000032 ORTHO05D005297 1.7e-42 176.8 177 53.7
arahy.Tifrunner.gnm1.ann1.J9S8YD Arachis hypogaea HOM05D000032 ORTHO05D005297 1.7e-42 176.8 195 48.7
VMungo1383G0796 Vigna mungo HOM05D000032 ORTHO05D005297 1.7e-42 176.8 194 49.5
Lalb_Chr23g0277101 Lupinus albus HOM05D000032 ORTHO05D005297 2.2e-42 176.4 199 49.7
QL08p063816 Quercus lobata HOM05D000032 ORTHO05D005297 2.2e-42 176.4 196 51.0
Ciclev10033565m.g Citrus clementina HOM05D000032 ORTHO05D005297 3.8e-42 175.6 228 46.1
arahy.Tifrunner.gnm1.ann1.THB4SD Arachis hypogaea HOM05D000032 ORTHO05D005297 4.9e-42 175.3 195 48.2
ATR0665G523 Amborella trichopoda HOM05D000032 ORTHO05D005297 6.4e-42 174.9 199 50.8
Manes.07G134800 Manihot esculenta HOM05D000032 ORTHO05D005297 6.4e-42 174.9 204 48.5
Sabra08G0054300 Salix brachista HOM05D000032 ORTHO05D005297 6.4e-42 174.9 183 51.4
PGSC0003DMG400022369 Solanum tuberosum HOM05D000032 ORTHO05D005297 6.4e-42 174.9 191 51.3
Cfa001278 Carpinus fangiana HOM05D000032 ORTHO05D005297 8.4e-42 174.5 189 52.9
Solyc02g078880.4 Solanum lycopersicum HOM05D000032 ORTHO05D005297 8.4e-42 174.5 191 51.3
Sopen02g023690 Solanum pennellii HOM05D000032 ORTHO05D005297 1.1e-41 174.1 191 51.3
Sed0025808 Sechium edule HOM05D000032 ORTHO05D005297 2.4e-41 172.9 194 48.5
ClCG07G004580 Citrullus lanatus HOM05D000032 ORTHO05D005297 3.2e-41 172.6 197 48.2
Glyma.18G024200 Glycine max HOM05D000032 ORTHO05D005297 4.2e-41 172.2 199 48.2
Peaxi162Scf00284g00418 Petunia axillaris HOM05D000032 ORTHO05D005297 4.2e-41 172.2 192 49.5
arahy.Tifrunner.gnm1.ann1.Z9H7PX Arachis hypogaea HOM05D000032 ORTHO05D005297 7.1e-41 171.4 186 51.6
TAR636G3337 Trochodendron aralioides HOM05D000032 ORTHO05D005297 9.3e-41 171.0 194 50.5
Phvul.001G246000 Phaseolus vulgaris HOM05D000032 ORTHO05D005297 1.2e-40 170.6 197 46.7
unitig_0.g251 Utricularia gibba HOM05D000032 ORTHO05D005297 1.2e-40 170.6 195 49.2
FAN05G3944 Fragaria x ananassa HOM05D000032 ORTHO05D005297 1.6e-40 170.2 202 49.0
FAN05G0134 Fragaria x ananassa HOM05D000032 ORTHO05D005297 2.1e-40 169.9 202 49.0
FAN14G2577 Fragaria x ananassa HOM05D000032 ORTHO05D005297 2.1e-40 169.9 212 47.2
FAN09G2711 Fragaria x ananassa HOM05D000032 ORTHO05D005297 4.6e-40 168.7 198 49.0
MELO3C018389.2 Cucumis melo HOM05D000032 ORTHO05D005297 1.0e-39 167.5 197 48.2
CAN.G1181.2 Capsicum annuum HOM05D000032 ORTHO05D005297 1.3e-39 167.2 199 49.2
SGA_v2.0_scaffold858G53676 Striga asiatica HOM05D000032 ORTHO05D005297 1.7e-39 166.8 205 48.3
TPR.G27740 Trifolium pratense HOM05D000032 ORTHO05D005297 1.7e-39 166.8 199 46.7
Medtr3g071620 Medicago truncatula HOM05D000032 ORTHO05D005297 2.3e-39 166.4 196 46.9
Psat5g130640 Pisum sativum HOM05D000032 ORTHO05D005297 2.3e-39 166.4 198 46.5
Glyma.11G232900 Glycine max HOM05D000032 ORTHO05D005297 3.0e-39 166.0 195 48.7
Rhsim03G0147200 Rhododendron simsii HOM05D000032 ORTHO05D005297 3.0e-39 166.0 247 42.9
FvH4_6g03480 Fragaria vesca HOM05D000032 ORTHO05D005297 3.9e-39 165.6 212 45.8
HanXRQChr09g0253201 Helianthus annuus HOM05D000032 ORTHO05D005297 3.9e-39 165.6 200 46.5
Lj6g0003351 Lotus japonicus HOM05D000032 ORTHO05D005297 3.9e-39 165.6 199 48.2
SalBow5G2598 Salvia bowleyana HOM05D000032 ORTHO05D005297 5.1e-39 165.2 192 46.4
Nitab4.5_0000058g0070 Nicotiana tabacum HOM05D000032 ORTHO05D005297 1.1e-38 164.1 179 52.0
EL10Ac2g04668 Beta vulgaris HOM05D000032 ORTHO05D005297 1.5e-38 163.7 193 46.1
Hund15880 Selenicereus undatus HOM05D000032 ORTHO05D005297 3.3e-38 162.5 219 45.2
Nitab4.5_0003710g0050 Nicotiana tabacum HOM05D000032 ORTHO05D005297 4.3e-38 162.2 177 51.4
PSO339G0799 Papaver somniferum HOM05D000032 ORTHO05D005297 5.6e-38 161.8 194 46.9
Prupe.2G256400 Prunus persica HOM05D000032 ORTHO05D005297 9.6e-38 161.0 106 70.8
THA.LOC104826841 Tarenaya hassleriana HOM05D000032 ORTHO05D005297 9.6e-38 161.0 200 45.5
Ah.16g103900 Amaranthus hybridus HOM05D000032 ORTHO05D005297 1.3e-37 160.6 193 45.1
Aa31LG11G6520 Aethionema arabicum HOM05D000032 ORTHO05D005297 2.8e-37 159.5 202 43.1
Ca_15155_v3 Cicer arietinum L. HOM05D000032 ORTHO05D005297 4.8e-37 158.7 196 45.9
Carub.0006s0435 Capsella rubella HOM05D000032 ORTHO05D005297 1.8e-36 156.8 204 42.2
Os01g0164500 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D005297 1.8e-36 156.8 193 47.2
BraA02t04850Z Brassica rapa HOM05D000032 ORTHO05D005297 4.0e-36 155.6 203 41.9
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 4.0e-36 155.6 200 47.5
BcaB05g21715 Brassica carinata HOM05D000032 ORTHO05D005297 5.3e-36 155.2 195 42.1
CANSAT56G1113 Cannabis sativa HOM05D000032 ORTHO05D005297 6.9e-36 154.8 197 44.7
HPP92_013771 Vanilla planifolia HOM05D000032 ORTHO05D005297 6.9e-36 154.8 201 43.8
BolC2t06201H Brassica oleracea HOM05D000032 ORTHO05D005297 9.0e-36 154.5 203 41.9
C02p02360 Brassica napus HOM05D000032 ORTHO05D005297 1.2e-35 154.1 203 41.4
Haze_17282 Corylus avellana HOM05D000032 ORTHO05D005297 1.5e-35 153.7 196 49.0
Thhalv10013039m.g Eutrema salsugineum HOM05D000032 ORTHO05D005297 2.0e-35 153.3 205 41.5
EL10Ac2g04897 Beta vulgaris HOM05D000032 ORTHO05D005297 2.6e-35 152.9 236 42.8
Hma1.2p1_1013F.1_g247770 Hydrangea macrophylla HOM05D000032 ORTHO05D005297 2.6e-35 152.9 206 48.5
Haze_17273 Corylus avellana HOM05D000032 ORTHO05D005297 3.4e-35 152.5 196 49.0
AT5G05450 Arabidopsis thaliana HOM05D000032 ORTHO05D005297 1.3e-34 150.6 204 41.2
Sp6g37390 Schrenkiella parvula HOM05D000032 ORTHO05D005297 3.8e-34 149.1 209 39.7
AL6G15340 Arabidopsis lyrata HOM05D000032 ORTHO05D005297 4.9e-34 148.7 199 42.7
AUR62022947 Chenopodium quinoa HOM05D000032 ORTHO05D005297 6.4e-34 148.3 207 43.0
Zm00001eb123450 Zea mays HOM05D000032 ORTHO05D005297 1.2e-32 144.1 203 43.3
SEGI_02054 Sequoiadendron giganteum HOM05D000032 ORTHO05D005297 2.1e-32 143.3 169 49.1
CARHR207810 Cardamine hirsuta HOM05D000032 ORTHO05D005297 2.7e-32 142.9 201 40.8
CsaV3_5G010520 Cucumis sativus L. HOM05D000032 ORTHO05D005297 2.7e-32 142.9 122 56.6
ECA232G2267 Erigeron canadensis HOM05D001505 ORTHO05D005297 1.3e-31 140.6 179 45.8
FAN05G5768 Fragaria x ananassa HOM05D000032 ORTHO05D005297 3.9e-31 139.0 108 63.0
Carub.0005s0159 Capsella rubella HOM05D000032 ORTHO05D005297 8.7e-31 137.9 197 39.1
Mapoly0027s0149 Marchantia polymorpha HOM05D000032 ORTHO05D005297 2.5e-30 136.3 196 40.3
Pp3c11_500 Physcomitrium patens HOM05D000032 ORTHO05D005297 9.6e-30 134.4 192 40.6
Pp3c11_510 Physcomitrium patens HOM05D000032 ORTHO05D005297 9.6e-30 134.4 192 40.6
AUR62012307 Chenopodium quinoa HOM05D000032 ORTHO05D005297 2.8e-29 132.9 212 41.0
SMO304G0011 Selaginella moellendorffii HOM05D000032 ORTHO05D005297 8.1e-29 131.3 190 38.4
AL2G31390 Arabidopsis lyrata HOM05D000032 ORTHO05D005297 1.4e-28 130.6 205 38.0
Thhalv10015240m.g Eutrema salsugineum HOM05D000032 ORTHO05D005297 4.0e-28 129.0 110 54.5
MBI03_g33615_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D005297 2.2e-26 123.2 101 55.4
Atru.chr12.103 Acer truncatum HOM05D000032 ORTHO05D005297 4.9e-26 122.1 196 40.3
FvH4_6g01590 Fragaria vesca HOM05D000032 ORTHO05D005297 8.4e-26 121.3 90 65.6
FAN14G2339 Fragaria x ananassa HOM05D000032 ORTHO05D005297 8.4e-26 121.3 90 65.6
FAN14G5584 Fragaria x ananassa HOM05D000032 ORTHO05D005297 8.4e-26 121.3 90 65.6
BcaC03g14442 Brassica carinata HOM05D000032 ORTHO05D005297 1.4e-25 120.6 191 38.7
Thhalv10020409m.g Eutrema salsugineum HOM05D000032 ORTHO05D005297 2.4e-25 119.8 192 36.5
AT1G71370 Arabidopsis thaliana HOM05D000032 ORTHO05D005297 7.1e-25 118.2 116 48.3
SMO145G0278 Selaginella moellendorffii HOM05D000032 ORTHO05D005297 9.3e-25 117.9 117 47.9
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 1.8e-23 113.6 108 49.1
CARHR211680 Cardamine hirsuta HOM05D000032 ORTHO05D005297 2.3e-23 113.2 110 48.2
FAN02G3476 Fragaria x ananassa HOM05D000032 ORTHO05D005297 2.5e-22 109.8 81 66.7
CBR_g55379 Chara braunii HOM05D000032 ORTHO05D005297 1.3e-21 107.5 207 32.9
C02p18560 Brassica napus HOM05D000032 ORTHO05D005297 4.8e-21 105.5 191 34.6
BolC2t07996H Brassica oleracea HOM05D000032 ORTHO05D005297 4.8e-21 105.5 191 34.6
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 2.4e-20 103.2 193 34.2
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 4.0e-20 102.4 109 46.8
Sp6g36680 Schrenkiella parvula HOM05D000032 ORTHO05D005297 6.9e-20 101.7 90 53.3
Gohir.D04G070800 Gossypium hirsutum HOM05D000032 ORTHO05D005297 2.6e-19 99.8 56 80.4
AT1G71280 Arabidopsis thaliana HOM05D000032 ORTHO05D005297 8.4e-18 94.7 104 47.1
GSVIVG01032750001 Vitis vinifera HOM05D000032 ORTHO05D005297 1.1e-17 94.4 58 74.1
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 2.5e-17 93.2 90 48.9
ATR0737G091 Amborella trichopoda HOM05D000032 ORTHO05D005297 1.0e-15 87.8 69 63.8
Potri.010G184132 Populus trichocarpa HOM05D000032 ORTHO05D005297 2.3e-15 86.7 79 50.6
CiPaw.02G195900 Carya illinoinensis HOM05D000032 ORTHO05D005297 3.0e-15 86.3 55 70.9
Cre06.g282600 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D005297 1.1e-14 84.3 183 30.6
Oeu051632.1 Olea europaea HOM05D000032 ORTHO05D005297 4.8e-13 79.0 137 38.0
MCO12G016 Micromonas commoda HOM05D000032 ORTHO05D005297 2.6e-11 73.2 134 33.6
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 5.5e-09 65.5 73 42.5
PRCOL_00005127 Prasinoderma coloniale HOM05D000032 ORTHO05D005297 3.5e-08 62.8 92 35.9
A02p11190 Brassica napus HOM05D000032 ORTHO05D040598 1.0e-07 61.2 160 30.6
Cfa024542 Carpinus fangiana HOM05D000032 ORTHO05D005297 2.5e-06 56.6 92 34.8


User provided reference genes

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