Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 0.0e+00 1167.9 598 100.0
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 6.1e-298 1026.9 595 89.2
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 6.1e-298 1026.9 597 88.1
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 3.6e-282 974.5 596 85.2
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 3.3e-280 968.0 600 83.8
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 8.2e-279 963.4 599 83.6
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 3.8e-260 901.4 600 79.2
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 1.1e-251 873.2 601 77.2
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 1.3e-247 859.8 600 76.2
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 8.0e-242 840.5 570 77.5
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 3.4e-240 835.1 600 75.0
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 1.4e-238 829.7 600 75.0
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 7.3e-219 764.2 505 77.2
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 2.5e-182 642.9 606 57.6
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 1.2e-181 640.6 603 57.0
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 7.9e-181 637.9 647 55.2
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 3.0e-180 636.0 606 56.8
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 4.3e-179 632.1 637 56.5
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 2.2e-178 629.8 606 56.4
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 4.1e-177 625.5 613 55.6
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 5.3e-177 625.2 609 57.0
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 1.2e-176 624.0 618 55.3
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 2.2e-175 619.8 597 55.3
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 2.9e-175 619.4 610 56.2
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 5.0e-175 618.6 620 55.6
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 1.1e-174 617.5 610 56.2
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 9.4e-174 614.4 615 54.8
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 1.2e-173 614.0 606 55.3
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 2.1e-173 613.2 609 55.5
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 2.1e-173 613.2 609 55.7
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 1.0e-172 610.9 623 55.7
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 3.1e-169 599.4 583 54.7
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 4.1e-169 599.0 630 53.5
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 1.7e-167 593.6 651 51.5
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 1.7e-167 593.6 613 53.3
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 5.0e-167 592.0 612 52.8
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 1.4e-166 590.5 616 54.7
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.9e-166 590.1 609 52.4
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 2.1e-165 586.6 625 51.8
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 3.6e-165 585.9 612 53.4
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.1e-163 580.9 622 53.5
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 1.5e-163 580.5 600 53.7
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.1e-161 574.3 611 51.7
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 1.2e-160 570.9 591 52.3
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 1.7e-159 567.0 613 50.2
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 3.8e-159 565.8 617 52.0
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 4.2e-158 562.4 612 52.0
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 4.0e-156 555.8 604 53.5
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 5.2e-156 555.4 631 50.1
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.4e-153 547.4 625 50.6
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 1.8e-153 547.0 582 52.1
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 1.6e-152 543.9 561 53.1
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 2.0e-152 543.5 605 49.9
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 2.0e-152 543.5 576 53.0
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 3.5e-152 542.7 559 53.5
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 4.5e-152 542.3 600 50.5
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 4.5e-152 542.3 573 51.1
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 4.5e-152 542.3 607 50.9
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 1.3e-151 540.8 611 50.1
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.3e-151 540.8 606 49.8
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 2.9e-151 539.7 653 50.2
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.1e-150 537.7 531 54.2
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 4.2e-150 535.8 576 50.2
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 9.4e-150 534.6 600 50.2
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 3.6e-149 532.7 611 49.6
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 3.0e-148 529.6 571 51.8
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 1.5e-147 527.3 530 52.6
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 2.0e-147 526.9 612 48.7
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 2.6e-147 526.6 515 56.7
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 4.4e-147 525.8 609 49.6
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 2.2e-146 523.5 613 49.3
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 2.8e-146 523.1 621 49.0
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 1.8e-145 520.4 609 48.9
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 9.1e-145 518.1 610 48.9
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.2e-144 517.7 542 51.8
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 1.6e-144 517.3 559 50.4
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 1.1e-142 511.1 591 49.4
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 3.2e-142 509.6 602 49.3
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 2.6e-139 500.0 515 53.2
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 5.7e-139 498.8 657 45.2
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 7.0e-137 491.9 537 49.9
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 1.6e-136 490.7 639 47.1
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 3.8e-135 486.1 635 46.8
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 5.0e-135 485.7 606 46.9
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 4.7e-133 479.2 665 45.7
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 1.7e-130 470.7 634 44.3
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 6.4e-130 468.8 629 45.0
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 2.4e-129 466.8 597 44.9
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 7.0e-129 465.3 566 47.7
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 9.2e-129 464.9 626 45.2
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.5e-126 456.8 631 45.3
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 1.4e-124 451.1 494 50.4
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 9.2e-121 438.3 525 48.2
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 1.0e-119 434.9 592 44.1
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.3e-118 428.7 435 53.1
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 2.8e-117 426.8 409 53.8
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 2.5e-110 403.7 530 43.6
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 1.3e-90 338.2 564 37.8
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.3e-90 338.2 450 47.3
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 1.8e-84 317.8 474 41.4
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 3.0e-79 300.4 518 38.0
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 5.8e-75 286.2 591 34.3
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 1.5e-59 235.0 288 49.7
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 9.4e-57 225.7 317 40.4
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 2.1e-48 198.0 194 52.1
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 4.5e-43 180.3 191 51.3
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 3.2e-41 174.1 598 27.1
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 1.0e-31 142.5 430 27.2
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 3.3e-25 120.9 579 23.5
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 7.2e-25 119.8 365 29.3
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 1.7e-21 108.6 123 48.0
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.7e-18 98.6 129 46.5
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.7e-18 98.6 129 46.5
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.0e-18 97.1 129 46.5
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 5.0e-18 97.1 129 46.5
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 7.8e-11 73.2 68 57.4
Aa31LG1G14610 Aethionema arabicum HOM05D006562 ORTHO05D008230 3.9e-10 70.9 61 73.8
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 1.1e-09 69.3 264 23.1
Nitab4.5_0003551g0050 Nicotiana tabacum HOM05D004977 ORTHO05D006454 1.5e-09 68.9 264 23.1
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 1.5e-09 68.9 287 23.0
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 1.5e-09 68.9 264 23.1
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 1.5e-09 68.9 264 23.1
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 2.5e-09 68.2 321 24.0
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 3.3e-09 67.8 305 24.6
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 3.3e-09 67.8 305 24.6
Aa31LG1G13410 Aethionema arabicum HOM05D004977 ORTHO05D006454 7.3e-09 66.6 264 24.2
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 7.3e-09 66.6 68 57.4
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 9.5e-09 66.2 264 23.1
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 1.6e-08 65.5 285 22.8
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 2.1e-08 65.1 134 30.6
Migut.D02372 Erythranthe guttata HOM05D004977 ORTHO05D006454 2.8e-08 64.7 267 24.3
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 6.2e-08 63.5 294 23.8
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 1.4e-07 62.4 346 23.4
MSTRG.21010 Avicennia marina HOM05D004977 ORTHO05D006454 2.3e-07 61.6 267 23.2
CARHR191520 Cardamine hirsuta HOM05D004977 ORTHO05D006454 2.3e-07 61.6 277 23.8
CiPaw.13G126500 Carya illinoinensis HOM05D004977 ORTHO05D006454 4.0e-07 60.8 272 23.2
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 4.0e-07 60.8 316 22.5
Prupe.8G068000 Prunus persica HOM05D004977 ORTHO05D006454 4.0e-07 60.8 262 24.4
QL01p019084 Quercus lobata HOM05D004977 ORTHO05D006454 4.0e-07 60.8 284 24.3
unitig_699.g19732 Utricularia gibba HOM05D004977 ORTHO05D006454 4.0e-07 60.8 267 24.3
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 5.2e-07 60.5 325 21.8
BNapus_Darmor_BZH_scaffold_38p00910 Brassica napus HOM05D004977 ORTHO05D006454 5.2e-07 60.5 259 22.8
Carub.0006s1965 Capsella rubella HOM05D004977 ORTHO05D006454 5.2e-07 60.5 259 23.6
MSTRG.21003 Avicennia marina HOM05D004977 ORTHO05D006454 6.8e-07 60.1 267 22.8
BcaC03g13854 Brassica carinata HOM05D004977 ORTHO05D006454 6.8e-07 60.1 259 23.2
BolC2t07133H Brassica oleracea HOM05D004977 ORTHO05D006454 6.8e-07 60.1 259 23.2
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 6.8e-07 60.1 325 21.8
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 6.8e-07 60.1 269 22.3
Gohir.A05G395800 Gossypium hirsutum HOM05D004977 ORTHO05D006454 6.8e-07 60.1 270 23.3
Os11g0572100 Oryza sativa ssp. japonica HOM05D004977 ORTHO05D006454 6.8e-07 60.1 264 23.1
HPP92_002246 Vanilla planifolia HOM05D004977 ORTHO05D006454 6.8e-07 60.1 339 23.0
Lj2C831G4 Lonicera japonica HOM05D004977 ORTHO05D006454 8.9e-07 59.7 264 22.7
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 8.9e-07 59.7 335 22.7
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 1.2e-06 59.3 289 21.8
Nn6g34596 Nelumbo nucifera HOM05D004977 ORTHO05D006454 1.2e-06 59.3 259 21.6
AL6G32970 Arabidopsis lyrata HOM05D004977 ORTHO05D006454 1.5e-06 58.9 272 22.8
AT5G22010 Arabidopsis thaliana HOM05D004977 ORTHO05D006454 1.5e-06 58.9 259 22.8
CDE05G0645 Ceratophyllum demersum HOM05D004977 ORTHO05D006454 1.5e-06 58.9 259 21.6
FAN21G3176 Fragaria x ananassa HOM05D004977 ORTHO05D006454 2.0e-06 58.5 261 23.4
Gohir.D04G019200 Gossypium hirsutum HOM05D004977 ORTHO05D006454 2.0e-06 58.5 270 22.6
Gorai.012G023000 Gossypium raimondii HOM05D004977 ORTHO05D006454 2.0e-06 58.5 270 22.6
SGA_v2.0_scaffold7G04011 Striga asiatica HOM05D004977 ORTHO05D006454 2.0e-06 58.5 267 22.8
Thhalv10012587m.g Eutrema salsugineum HOM05D004977 ORTHO05D006454 2.6e-06 58.2 259 23.2
Sp6g23180 Schrenkiella parvula HOM05D004977 ORTHO05D006454 2.6e-06 58.2 259 23.2
Actinidia04910 Actinidia chinensis HOM05D004977 ORTHO05D006454 3.4e-06 57.8 264 21.6
SalBow6G4955 Salvia bowleyana HOM05D004977 ORTHO05D006454 3.4e-06 57.8 264 23.1
TAR633G0771 Trochodendron aralioides HOM05D004977 ORTHO05D006454 3.4e-06 57.8 279 22.2
BcaB05g22754 Brassica carinata HOM05D004977 ORTHO05D006454 4.4e-06 57.4 259 22.8
Cc01_g07900 Coffea canephora HOM05D004977 ORTHO05D006454 5.8e-06 57.0 267 23.6
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 5.8e-06 57.0 287 21.3
Oeu058189.1 Olea europaea HOM05D004977 ORTHO05D006454 7.5e-06 56.6 264 21.2
Zm00001eb114240 Zea mays HOM05D004977 ORTHO05D006454 7.5e-06 56.6 264 22.0
Sc11g0002670 Simmondsia chinensis HOM05D004977 ORTHO05D006454 9.8e-06 56.2 261 22.6


User provided reference genes

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