Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 2.9e-282 974.5 481 100.0
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 2.1e-261 905.2 485 92.2
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 9.0e-260 899.8 485 91.5
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 5.1e-255 884.0 481 89.6
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 1.0e-247 859.8 484 87.0
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 6.2e-245 850.5 484 86.0
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 2.0e-243 845.5 484 85.5
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.1e-241 839.7 484 85.1
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 1.6e-240 835.9 484 84.5
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 8.2e-237 823.5 486 84.0
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.1e-236 823.2 486 84.0
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 2.2e-221 772.3 486 77.8
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 6.6e-186 654.4 475 65.3
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 7.3e-185 651.0 484 64.3
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 4.7e-184 648.3 481 66.3
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 6.8e-183 644.4 487 66.1
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 2.2e-181 639.4 482 64.9
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 2.9e-181 639.0 481 63.6
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 4.9e-181 638.3 481 65.5
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 6.4e-181 637.9 485 65.8
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 1.1e-180 637.1 485 64.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.4e-180 636.7 478 65.3
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 5.4e-180 634.8 487 66.1
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 2.7e-179 632.5 481 64.2
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 1.0e-178 630.6 492 64.6
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.9e-178 628.6 484 64.9
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 8.6e-178 627.5 490 63.3
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.5e-177 626.7 481 64.7
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 1.5e-177 626.7 478 63.2
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 2.5e-177 625.9 481 63.6
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 2.5e-177 625.9 483 64.0
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 3.3e-177 625.5 486 64.4
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 3.3e-177 625.5 486 64.4
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 4.3e-177 625.2 486 63.0
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 1.2e-176 623.6 493 61.9
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 1.6e-176 623.2 481 61.7
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 2.1e-176 622.9 481 64.0
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 2.1e-176 622.9 484 62.0
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 8.0e-176 620.9 481 63.2
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 1.1e-175 620.5 481 62.6
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.1e-175 620.5 483 63.1
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 1.8e-175 619.8 486 64.0
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.8e-175 619.8 488 64.5
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 2.3e-175 619.4 484 63.6
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 4.0e-175 618.6 488 62.7
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 1.5e-174 616.7 483 63.1
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 4.4e-174 615.1 481 64.0
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 1.3e-173 613.6 484 63.6
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.7e-173 612.1 485 61.0
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 8.3e-173 610.9 481 62.6
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 9.2e-172 607.4 487 62.8
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 1.2e-171 607.1 480 61.9
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 1.6e-171 606.7 490 61.8
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 1.6e-171 606.7 484 61.8
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 2.1e-171 606.3 482 61.4
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 7.8e-171 604.4 483 60.2
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 1.0e-170 604.0 480 63.1
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 1.3e-170 603.6 478 62.8
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 6.6e-170 601.3 446 64.6
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 6.6e-170 601.3 452 65.5
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 2.5e-169 599.4 481 61.3
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 3.3e-169 599.0 480 61.2
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 7.3e-169 597.8 487 60.6
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 2.8e-168 595.9 480 60.6
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 6.2e-168 594.7 482 59.3
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 6.2e-168 594.7 485 61.2
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 4.0e-167 592.0 482 60.8
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 2.0e-166 589.7 500 61.4
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 2.0e-166 589.7 483 60.5
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 3.4e-166 589.0 487 61.2
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 2.2e-165 586.3 481 60.9
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 3.5e-163 578.9 481 59.5
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 3.3e-161 572.4 479 58.5
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 4.9e-157 558.5 481 58.6
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 1.0e-154 550.8 500 58.4
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 5.1e-154 548.5 482 59.3
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 2.1e-152 543.1 481 57.8
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 6.2e-152 541.6 444 60.8
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 1.5e-150 537.0 458 58.3
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 4.2e-148 528.9 427 60.2
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 4.3e-145 518.8 442 58.1
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.8e-141 505.8 375 64.0
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 4.6e-139 498.8 275 90.5
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 3.1e-135 486.1 385 59.0
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 2.0e-134 483.4 383 63.2
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 3.8e-133 479.2 498 49.2
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 4.2e-132 475.7 320 71.2
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 1.1e-127 461.1 271 84.1
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 4.0e-127 459.1 339 64.9
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 6.1e-123 445.3 474 46.8
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.0e-122 444.5 317 65.3
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 2.6e-118 429.9 489 45.2
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 1.1e-111 407.9 436 49.1
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 5.0e-109 399.1 218 89.4
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 3.9e-98 362.8 444 44.6
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 9.7e-97 358.2 402 44.5
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 1.7e-93 347.4 359 50.1
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.2e-93 347.1 256 65.6
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 2.5e-92 343.6 390 45.4
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 8.0e-91 338.6 236 75.4
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 7.7e-86 322.0 457 41.8
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 1.3e-85 321.2 268 60.8
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 2.9e-85 320.1 398 42.0
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 5.5e-84 315.8 300 54.7
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 1.8e-82 310.8 240 60.8
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 4.9e-80 302.8 320 51.6
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.8e-67 260.4 251 55.0
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 2.2e-64 250.8 204 64.2
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.7e-56 224.6 213 52.1
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 3.2e-47 193.7 118 77.1
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 4.1e-47 193.4 193 52.3
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 1.2e-46 191.8 118 77.1
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 1.1e-39 168.7 116 72.4
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 5.1e-29 133.3 108 62.0
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 6.9e-26 122.9 100 57.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 1.1e-23 115.5 116 50.0
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 1.4e-15 88.6 53 79.2
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 1.4e-15 88.6 53 79.2
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 1.3e-08 65.5 33 87.9
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 5.5e-07 60.1 44 61.4
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 3.5e-06 57.4 68 47.1


User provided reference genes

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