Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 4.1e-187 658.3 433 100.0
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 2.8e-151 539.3 444 81.5
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.7e-148 530.0 437 84.9
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 2.7e-138 496.1 445 78.7
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 1.1e-134 484.2 448 78.1
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 2.4e-131 473.0 443 71.3
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.5e-128 463.8 443 76.1
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.5e-125 453.8 441 74.1
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 9.3e-123 444.5 440 68.4
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 6.0e-122 441.8 439 75.4
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 7.9e-122 441.4 462 74.9
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.0e-121 441.0 443 72.5
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 5.6e-120 435.3 347 77.8
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.1e-112 411.0 443 70.2
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 3.3e-112 409.5 442 69.5
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 3.3e-112 409.5 443 70.0
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 9.6e-112 407.9 444 68.5
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 5.7e-104 382.1 406 71.9
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 7.4e-104 381.7 441 64.2
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.2e-101 374.4 349 61.9
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.4e-89 334.3 353 57.8
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 2.0e-88 330.5 341 60.1
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 2.0e-85 320.5 365 59.7
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 3.9e-81 306.2 388 55.7
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.0e-80 303.9 372 54.6
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 4.4e-80 302.8 344 53.2
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.8e-79 299.3 357 55.2
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 1.1e-78 298.1 377 51.7
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.8e-78 297.4 378 53.4
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.1e-78 296.6 353 56.4
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 7.0e-78 295.4 355 53.5
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.5e-77 293.1 354 52.5
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 5.9e-77 292.4 367 52.6
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.3e-76 291.2 378 57.1
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.1e-75 288.1 364 51.6
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 5.5e-75 285.8 378 50.5
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 2.7e-74 283.5 357 57.1
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 6.1e-74 282.3 340 51.8
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 1.4e-73 281.2 268 64.6
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.4e-73 281.2 369 52.3
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 2.3e-73 280.4 359 53.5
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.0e-73 280.0 356 53.1
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 4.0e-73 279.6 350 55.4
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 6.8e-73 278.9 310 55.8
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 8.8e-73 278.5 359 56.3
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 1.5e-72 277.7 355 55.8
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.0e-72 277.3 338 61.5
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 2.8e-71 273.5 360 52.8
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 3.7e-71 273.1 388 50.5
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 3.7e-71 273.1 360 53.3
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 4.8e-71 272.7 364 54.1
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 6.3e-71 272.3 359 53.5
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.4e-70 271.2 359 51.5
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 1.8e-70 270.8 374 50.5
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 3.1e-70 270.0 409 52.1
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 9.1e-70 268.5 372 50.5
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 2.0e-69 267.3 356 56.7
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 5.9e-69 265.8 381 50.9
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 7.7e-69 265.4 367 48.8
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.0e-68 265.0 385 48.3
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 1.0e-68 265.0 367 49.9
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.3e-68 264.6 372 51.6
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 1.3e-68 264.6 359 53.2
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 4.2e-67 259.6 354 49.7
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 4.2e-67 259.6 361 50.4
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 7.2e-67 258.8 421 47.7
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 9.4e-67 258.5 372 49.7
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 2.7e-66 256.9 362 52.5
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.6e-66 256.5 361 54.8
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.8e-65 254.2 352 52.0
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 3.0e-65 253.4 367 49.0
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.5e-64 251.1 363 51.0
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.5e-64 251.1 363 52.6
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 2.0e-64 250.8 345 46.4
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 3.4e-64 250.0 376 48.9
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-63 248.1 464 55.4
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.3e-63 248.1 370 49.5
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.7e-63 247.7 465 53.8
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 3.1e-62 243.4 322 50.0
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 5.4e-62 242.7 366 52.7
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 7.0e-62 242.3 356 46.9
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.6e-61 241.1 371 45.6
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.5e-61 240.0 380 47.4
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 5.9e-61 239.2 358 50.6
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.0e-60 238.4 274 58.0
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.3e-60 238.0 376 49.5
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.7e-60 237.7 373 47.7
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 2.3e-60 237.3 366 47.5
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 3.8e-60 236.5 381 46.7
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.0e-60 236.1 372 44.6
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 1.5e-59 234.6 349 50.1
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 2.5e-59 233.8 409 45.0
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.3e-59 233.4 372 44.6
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 4.2e-59 233.0 165 69.7
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 9.5e-59 231.9 382 43.5
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.6e-58 231.1 334 49.4
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.8e-58 230.3 363 46.8
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.8e-58 230.3 363 46.8
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 8.0e-58 228.8 342 45.0
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 8.0e-58 228.8 349 49.6
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 8.0e-58 228.8 383 52.2
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.0e-57 228.4 367 46.3
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 1.8e-57 227.6 389 48.6
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 4.0e-57 226.5 313 50.2
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 4.0e-57 226.5 262 57.6
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.5e-56 224.6 241 56.0
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 4.4e-56 223.0 371 45.8
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 7.5e-56 222.2 373 46.4
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 9.8e-56 221.9 368 47.6
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 9.8e-56 221.9 368 47.6
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 2.2e-55 220.7 354 48.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 2.2e-55 220.7 417 46.8
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.8e-54 217.6 383 44.6
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 2.4e-54 217.2 253 57.3
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 4.1e-54 216.5 266 55.3
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.7e-53 213.8 367 44.4
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 3.5e-53 213.4 366 44.8
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 7.8e-53 212.2 165 66.1
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-52 211.5 455 52.1
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.9e-52 210.3 349 45.0
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 5.0e-52 209.5 362 45.3
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 8.6e-52 208.8 382 46.1
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.1e-51 208.4 369 45.5
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 3.3e-51 206.8 262 51.9
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 4.3e-51 206.5 338 47.3
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 7.3e-51 205.7 365 43.6
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 7.3e-51 205.7 401 46.9
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.2e-50 204.9 325 41.8
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.2e-50 204.9 456 51.5
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.6e-50 204.5 358 44.4
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.1e-50 204.1 210 57.1
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.6e-50 203.4 345 46.4
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 1.4e-49 201.4 252 53.6
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 4.0e-49 199.9 186 60.2
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 4.4e-48 196.4 258 59.7
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 9.8e-48 195.3 297 45.8
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.9e-47 193.7 363 43.3
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.9e-47 193.7 158 71.5
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.3e-44 184.9 293 43.3
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 3.9e-44 183.3 301 45.8
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.5e-43 181.4 327 43.4
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 1.9e-43 181.0 208 55.8
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 1.2e-42 178.3 122 66.4
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 2.8e-42 177.2 254 51.2
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 7.5e-40 169.1 131 73.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 2.7e-37 160.6 148 64.9
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 7.8e-37 159.1 275 48.4
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 7.3e-35 152.5 155 60.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 3.1e-33 147.1 245 49.0
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 6.8e-25 119.4 81 69.1
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 3.9e-20 103.6 90 48.9
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 2.1e-10 71.2 92 46.7
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.4e-09 68.6 42 73.8
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 1.4e-09 68.6 99 41.4
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 1.2e-08 65.5 92 42.4
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.5e-08 65.1 92 41.3
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 4.5e-08 63.5 112 35.7
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 4.5e-08 63.5 92 41.3
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 5.8e-08 63.2 105 39.0
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 7.6e-08 62.8 94 37.2
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 9.9e-08 62.4 92 40.2
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 1.3e-07 62.0 92 41.3
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 2.9e-07 60.8 95 38.9
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 2.9e-07 60.8 100 37.0
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 3.8e-07 60.5 96 40.6
Gorai.009G406700 Gossypium raimondii HOM05D005264 ORTHO05D005428 3.8e-07 60.5 110 38.2
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 6.4e-07 59.7 102 37.3
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 1.1e-06 58.9 92 39.1
Gohir.D07G112100 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.9e-06 58.2 98 37.8
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 4.2e-06 57.0 98 37.8


User provided reference genes

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