Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 2.3e-125 452.2 227 100.0
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.0e-56 224.2 202 58.9
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.8e-53 213.4 215 56.3
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.1e-33 145.2 192 45.8
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.3e-32 143.3 196 44.9
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.5e-31 140.6 191 44.0
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 2.0e-31 140.2 188 44.1
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.4e-31 139.4 183 46.4
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 5.7e-31 138.7 187 44.9
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 5.7e-31 138.7 239 39.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.3e-30 137.5 191 43.5
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 2.2e-30 136.7 190 42.6
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 2.2e-30 136.7 190 42.6
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 6.3e-30 135.2 197 43.7
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.1e-29 134.4 190 42.1
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.1e-29 134.4 190 42.1
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.8e-29 133.7 194 42.8
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 7.0e-29 131.7 199 41.7
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 9.1e-29 131.3 193 42.5
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 9.1e-29 131.3 193 42.5
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 3.5e-28 129.4 192 42.2
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 4.5e-28 129.0 190 42.1
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 3.8e-27 125.9 190 42.1
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 4.2e-26 122.5 186 40.9
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.2e-25 120.9 152 46.1
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.1e-25 120.2 180 39.4
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.0e-24 117.9 183 38.8
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.4e-23 112.8 176 39.8
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 4.4e-23 112.5 179 38.0
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 7.5e-23 111.7 187 39.0
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.3e-22 110.9 174 40.2
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.2e-22 110.2 191 37.7
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.2e-22 110.2 193 37.3
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 1.4e-21 107.5 186 36.6
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.4e-21 107.5 196 36.2
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.8e-21 107.1 189 39.2
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.8e-21 107.1 194 38.1
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 4.1e-21 105.9 184 35.3
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 4.1e-21 105.9 186 37.6
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.4e-21 105.5 222 33.8
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 5.4e-21 105.5 187 35.8
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 5.4e-21 105.5 189 37.6
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.0e-21 105.1 222 33.8
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.0e-21 105.1 188 36.2
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 7.0e-21 105.1 187 35.8
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 9.1e-21 104.8 192 34.4
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 9.1e-21 104.8 184 35.3
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 9.1e-21 104.8 184 35.3
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 1.2e-20 104.4 181 35.9
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.6e-20 104.0 210 35.2
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.6e-20 104.0 188 34.6
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.6e-20 104.0 193 35.8
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 2.0e-20 103.6 185 35.7
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.0e-20 103.6 192 34.4
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.5e-20 102.8 171 38.0
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.5e-20 102.8 186 35.5
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.5e-20 102.4 179 36.9
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 7.7e-20 101.7 190 36.3
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 7.7e-20 101.7 196 35.7
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 7.7e-20 101.7 194 36.1
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.0e-19 101.3 187 36.4
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.0e-19 101.3 187 36.4
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.0e-19 101.3 186 34.9
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.0e-19 101.3 193 34.7
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.0e-19 101.3 187 36.4
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.3e-19 100.9 184 36.4
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.7e-19 100.5 185 35.7
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.7e-19 100.5 194 36.6
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 2.9e-19 99.8 183 34.4
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 3.8e-19 99.4 187 35.8
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 6.6e-19 98.6 173 36.4
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 8.6e-19 98.2 184 35.3
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 8.6e-19 98.2 187 35.3
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.1e-18 97.8 194 32.5
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.1e-18 97.8 191 34.6
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.5e-18 97.4 195 31.8
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.9e-18 97.1 174 36.2
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.9e-18 97.1 183 34.4
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.3e-18 96.3 193 32.6
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 5.6e-18 95.5 192 35.4
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 5.6e-18 95.5 186 33.9
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 7.2e-18 95.1 189 33.3
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 9.5e-18 94.7 186 32.8
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 9.5e-18 94.7 178 34.8
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.2e-17 94.4 195 34.4
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.6e-17 94.0 192 33.9
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.6e-17 94.0 173 34.7
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 2.1e-17 93.6 154 37.7
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 2.1e-17 93.6 164 34.8
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.1e-17 93.6 179 32.4
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.1e-17 93.6 179 32.4
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 4.7e-17 92.4 184 35.3
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 4.7e-17 92.4 153 37.3
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 4.7e-17 92.4 210 31.4
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 4.7e-17 92.4 180 35.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 8.0e-17 91.7 188 34.0
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.4e-16 90.9 188 34.0
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.8e-16 90.5 180 33.9
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.8e-16 90.5 201 33.3
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.3e-16 90.1 151 35.1
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.3e-16 90.1 151 35.1
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.0e-16 89.7 204 30.4
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.0e-16 89.4 175 35.4
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 6.8e-16 88.6 188 34.0
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 8.9e-16 88.2 179 34.6
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.9e-16 88.2 158 35.4
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.2e-15 87.8 195 31.8
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.0e-15 87.0 198 31.3
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 4.4e-15 85.9 175 34.9
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 4.4e-15 85.9 151 36.4
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 4.4e-15 85.9 184 33.2
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.5e-15 85.1 225 29.3
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 1.7e-14 84.0 174 32.8
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 4.9e-14 82.4 206 32.0
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 4.9e-14 82.4 143 37.1
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.3e-14 81.6 226 27.4
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-13 81.3 174 32.8
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.1e-13 81.3 143 35.7
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.4e-13 80.9 211 29.9
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 3.2e-13 79.7 214 29.9
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 5.4e-13 79.0 116 37.9
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.2e-12 77.8 191 33.0
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 2.0e-12 77.0 111 39.6
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 5.9e-12 75.5 124 40.3
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 1.3e-11 74.3 142 33.8
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.3e-11 73.6 164 37.8
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 2.3e-11 73.6 109 39.4
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 3.9e-11 72.8 111 41.4
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 6.6e-11 72.0 147 33.3
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.6e-11 71.6 210 28.1
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.9e-10 70.5 203 31.0
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 2.1e-09 67.0 95 42.1
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 5.2e-08 62.4 102 38.2
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.8e-08 62.0 116 35.3
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 3.7e-06 56.2 136 30.1


User provided reference genes

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