Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.2e-121 439.9 222 100.0
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.1e-118 429.1 222 95.9
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 2.1e-118 429.1 222 96.8
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 6.9e-114 414.1 222 94.1
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 9.3e-111 403.7 222 92.8
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.0e-109 400.2 222 91.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 8.7e-109 397.1 222 91.0
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 8.7e-109 397.1 222 91.4
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 4.3e-108 394.8 222 91.0
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 7.4e-108 394.0 222 90.5
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 9.6e-108 393.7 222 91.0
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 9.6e-108 393.7 222 91.0
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 4.8e-107 391.3 222 90.5
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-106 390.2 222 90.1
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.1e-106 390.2 222 90.5
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 4.1e-106 388.3 222 89.6
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 6.9e-106 387.5 236 85.6
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.5e-105 386.3 230 87.8
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.5e-100 369.0 221 83.7
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 8.5e-96 354.0 220 81.4
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.2e-78 297.0 220 67.3
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 5.2e-77 291.6 220 65.5
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.2e-73 280.4 219 67.1
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.6e-73 280.0 220 63.2
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 2.7e-73 279.3 220 65.0
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 3.5e-73 278.9 220 63.6
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 1.3e-72 276.9 220 66.4
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.1e-71 273.9 220 63.6
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.9e-71 273.1 219 64.4
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.9e-71 273.1 220 62.3
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-71 273.1 220 63.2
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 2.5e-71 272.7 220 63.2
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.2e-71 272.3 220 61.4
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 7.2e-71 271.2 219 64.4
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.2e-71 271.2 220 62.7
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.6e-70 270.0 220 63.2
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.6e-70 270.0 220 63.6
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 2.7e-70 269.2 207 68.1
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 3.6e-70 268.9 219 65.8
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.1e-70 268.1 220 61.8
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.1e-70 268.1 220 61.8
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.1e-70 268.1 220 61.8
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.0e-70 267.7 220 61.8
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.0e-70 267.7 220 61.8
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.8e-69 266.5 221 62.0
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-69 266.2 220 61.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-69 266.2 220 61.4
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.2e-69 265.0 220 61.4
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.8e-69 264.6 213 63.4
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.8e-69 264.6 215 62.8
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 1.2e-68 263.8 223 61.4
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.2e-68 263.8 219 64.4
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.0e-68 263.1 220 64.1
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 2.6e-68 262.7 219 64.4
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.1e-66 257.3 219 60.3
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.8e-66 256.5 248 56.9
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 3.1e-66 255.8 221 60.6
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 5.4e-66 255.0 219 63.0
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 2.7e-65 252.7 222 59.5
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 4.5e-65 251.9 221 60.6
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 7.7e-65 251.1 219 59.8
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.0e-64 250.8 221 57.0
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.3e-64 250.4 222 60.4
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 2.2e-64 249.6 224 62.1
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 5.0e-64 248.4 222 58.6
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 5.0e-64 248.4 222 59.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 8.5e-64 247.7 219 61.6
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 3.2e-63 245.7 222 59.9
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 4.2e-63 245.4 222 58.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 7.2e-63 244.6 220 58.6
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 9.5e-63 244.2 219 59.8
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 9.5e-63 244.2 222 58.6
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 3.6e-62 242.3 221 58.8
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.6e-62 242.3 222 58.6
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 3.0e-61 239.2 219 57.5
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 4.0e-61 238.8 219 58.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 6.8e-61 238.0 203 60.1
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.2e-60 237.3 208 60.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.2e-60 237.3 191 66.5
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.5e-60 236.9 219 58.0
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.0e-60 236.5 222 56.8
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 2.6e-60 236.1 221 55.7
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 3.4e-60 235.7 219 58.9
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 3.4e-60 235.7 195 62.6
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 4.4e-60 235.3 219 58.4
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 5.7e-60 235.0 214 57.5
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 9.8e-60 234.2 219 58.9
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 9.8e-60 234.2 220 57.3
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-59 233.8 219 58.4
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.3e-59 233.8 222 57.2
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.2e-59 233.0 195 62.6
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 2.8e-59 232.6 221 55.7
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 2.8e-59 232.6 219 58.0
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.8e-59 232.6 227 55.5
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 6.3e-59 231.5 203 62.1
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 8.3e-59 231.1 219 56.2
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 8.3e-59 231.1 193 61.7
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.8e-58 229.9 220 60.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 7.0e-58 228.0 213 59.2
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.2e-57 227.3 210 57.1
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 2.7e-57 226.1 194 63.4
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 7.7e-57 224.6 188 62.2
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 2.3e-56 223.0 231 56.3
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-56 221.9 165 69.1
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 6.6e-56 221.5 256 50.8
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 8.6e-56 221.1 237 54.4
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.6e-54 216.9 219 53.9
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.6e-54 216.9 217 55.8
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 2.1e-54 216.5 232 51.3
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.7e-54 215.3 220 53.2
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 4.7e-54 215.3 192 62.5
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.0e-53 214.2 186 62.9
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.0e-53 214.2 231 52.4
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 8.9e-53 211.1 275 47.3
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 2.9e-51 206.1 209 57.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 6.4e-51 204.9 123 87.8
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.7e-49 199.5 265 46.0
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 3.3e-47 192.6 197 56.9
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 1.2e-46 190.7 195 53.8
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 1.6e-46 190.3 155 67.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 3.6e-46 189.1 216 52.3
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.7e-46 188.7 192 56.8
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 8.0e-46 188.0 327 37.6
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.7e-43 179.1 155 61.3
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 3.7e-43 179.1 250 44.0
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-42 175.6 147 61.9
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 2.7e-41 172.9 138 69.6
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 5.0e-40 168.7 171 56.1
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.1e-39 167.5 146 62.3
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.5e-39 167.2 135 65.2
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 7.3e-39 164.9 140 65.7
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 8.1e-38 161.4 200 51.5
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.1e-34 151.0 169 54.4
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 9.5e-31 137.9 97 77.3
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.5e-31 137.9 144 55.6
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.1e-29 132.9 95 64.2
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 3.9e-24 115.9 181 39.2
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 2.8e-22 109.8 179 36.3
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 6.2e-22 108.6 180 36.7
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.1e-21 107.8 119 51.3
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.1e-21 107.8 91 58.2
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 2.9e-19 99.8 151 42.4
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 5.4e-18 95.5 184 35.3
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.1e-17 93.6 152 42.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.6e-15 85.5 60 60.0
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.8e-13 80.5 96 45.8
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.5e-12 77.4 99 43.4
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.7e-11 73.9 50 70.0
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.4e-10 70.9 151 34.4
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.4e-10 70.9 59 57.6
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 7.9e-09 65.1 180 31.1


User provided reference genes

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