Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 0.0e+00 1150.2 565 100.0
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 0.0e+00 1145.2 564 99.3
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 0.0e+00 1141.7 564 98.9
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 0.0e+00 1140.9 564 98.9
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 0.0e+00 1140.9 564 98.9
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 0.0e+00 1140.9 565 99.3
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 0.0e+00 1137.9 564 98.6
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 0.0e+00 1137.9 564 98.6
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 0.0e+00 1137.5 564 98.6
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 0.0e+00 1133.6 565 98.8
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 0.0e+00 1114.0 564 95.9
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1112.4 564 95.9
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1099.3 564 94.7
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1092.4 564 94.0
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 564 93.1
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 564 93.3
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 564 93.3
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 564 92.7
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 564 92.7
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 564 93.1
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 564 92.6
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 564 92.7
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 564 93.1
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 564 92.9
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 564 92.4
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 564 92.0
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 564 92.9
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 561 92.0
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 3.9e-312 1074.3 564 92.6
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.9e-312 1074.3 566 91.9
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 3.9e-312 1074.3 564 92.6
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 3.9e-312 1073.5 564 92.4
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 564 91.8
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 566 91.9
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 566 91.9
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 561 91.6
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 1.5e-311 1072.0 564 92.2
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.5e-311 1072.0 561 92.3
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 566 91.7
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 553 93.3
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 566 91.9
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 564 92.0
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.5e-311 1070.8 566 91.5
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 3.5e-311 1070.8 564 92.0
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 565 91.5
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 7.7e-311 1069.7 564 91.8
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 555 93.2
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 564 91.7
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 555 92.8
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 564 92.2
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 2.9e-310 1067.8 563 92.4
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 3.8e-310 1067.4 564 91.5
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 5.0e-310 1067.0 564 91.8
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 5.0e-310 1067.0 561 91.8
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.5e-310 1066.6 564 91.5
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 6.5e-310 1066.6 564 91.5
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.1e-309 1065.8 564 91.1
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.1e-309 1065.8 564 91.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 1.4e-309 1065.4 564 91.5
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.9e-309 1065.1 564 91.3
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.9e-309 1065.1 561 91.3
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 3.2e-309 1064.3 555 91.9
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 5.5e-309 1063.5 564 90.8
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 596 88.1
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 555 92.1
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 1.2e-308 1062.4 564 90.8
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.6e-308 1060.8 552 92.6
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 4.7e-308 1060.4 555 91.7
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 6.1e-308 1060.1 574 89.7
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 8.0e-308 1059.7 564 91.3
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.4e-307 1058.9 564 91.7
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 564 90.6
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 2.3e-307 1058.1 564 90.8
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 2.3e-307 1058.1 564 90.6
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 3.0e-307 1057.7 564 90.6
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 3.3e-306 1054.3 563 91.1
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.6e-303 1045.4 619 83.8
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.2e-302 1041.6 564 89.7
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 5.0e-302 1040.4 553 90.1
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.1e-301 1039.3 569 88.8
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 2.5e-301 1038.1 600 85.0
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 4.2e-301 1037.3 554 90.3
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 2.1e-300 1035.0 594 86.0
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 6.1e-300 1033.5 552 90.4
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.0e-298 1028.5 564 88.7
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.6e-298 1028.1 521 96.7
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 3.4e-298 1027.7 521 95.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 9.8e-298 1026.2 567 88.7
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.6e-295 1018.8 575 87.7
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 552 87.3
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.0e-291 1006.1 553 87.0
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.6e-290 1001.5 554 85.6
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.4e-290 1001.1 554 85.6
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.0e-286 989.6 564 86.0
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 6.6e-286 986.9 539 85.9
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 6.6e-286 986.9 564 88.7
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 2.5e-277 958.4 487 93.8
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.4e-272 942.6 491 92.5
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 4.6e-263 911.0 454 95.4
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 4.3e-261 904.4 540 79.8
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 5.1e-246 854.4 543 76.4
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 5.6e-237 824.3 564 75.0
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 9.9e-234 813.5 406 95.3
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.2e-232 808.5 566 74.7
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 7.1e-232 807.4 421 93.6
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 2.1e-228 795.8 528 77.5
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 5.8e-226 787.7 521 77.4
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.4e-224 783.1 521 77.0
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.3e-222 775.8 564 71.8
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.0e-218 762.7 502 73.7
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.2e-215 753.4 555 70.5
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.7e-214 747.3 564 70.0
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.0e-209 733.8 391 91.6
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.0e-206 723.8 551 67.2
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.3e-193 680.2 502 70.3
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 3.3e-189 665.6 329 95.4
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.7e-170 602.8 312 90.7
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 2.2e-156 556.6 513 59.6
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.0e-145 519.6 262 93.9
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.1e-144 517.7 556 53.8
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.5e-138 496.1 463 57.9
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.1e-131 474.6 293 82.6
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.5e-128 464.2 259 88.8
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.3e-128 462.6 504 52.8
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.6e-128 462.2 302 77.2
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 7.6e-125 451.8 385 63.4
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.9e-123 447.2 565 47.8
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-121 441.4 500 49.8
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 5.6e-120 435.6 564 47.2
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.5e-115 419.1 238 88.7
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.5e-112 410.2 350 61.7
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.4e-107 394.4 196 94.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 7.9e-98 362.1 246 75.6
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.3e-97 360.5 267 69.3
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.8e-94 350.9 215 78.6
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 8.5e-92 342.0 167 97.0
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.5e-91 339.3 183 86.3
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 3.6e-90 336.7 300 62.0
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-85 321.6 154 97.4
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 2.2e-84 317.4 321 56.7
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 8.5e-84 315.5 160 91.2
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.7e-82 310.5 159 97.5
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 1.5e-80 304.7 156 91.7
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.6e-69 268.1 178 79.2
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.2e-61 241.9 156 75.6
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 2.3e-52 211.1 123 86.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.3e-47 195.3 149 68.5
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.4e-46 191.8 105 86.7
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.6e-42 177.2 118 71.2
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-41 175.3 113 76.1
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 8.9e-41 172.6 275 40.4
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 1.8e-33 148.3 98 77.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 3.0e-28 131.0 147 51.0
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-27 128.6 75 85.3
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 3.1e-25 120.9 73 83.6
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-22 110.2 55 96.4
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 1.2e-21 109.0 86 66.3
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-19 100.5 58 84.5
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 3.4e-16 90.9 47 89.4
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 7.6e-16 89.7 63 69.8
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.3e-15 89.0 88 62.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.9e-15 87.0 52 80.8
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-14 85.1 59 71.2
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 3.2e-14 84.3 44 81.8
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 8.7e-12 76.3 49 69.4
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 5.6e-11 73.6 60 63.3
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 6.2e-10 70.1 57 57.9
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 5.4e-06 57.0 53 56.6


User provided reference genes

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