Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 9.7e-112 406.8 195 100.0
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 3.6e-106 388.3 195 93.8
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 9.7e-104 380.2 195 91.8
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 9.7e-104 380.2 195 91.8
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 4.5e-93 344.7 195 83.1
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 9.4e-91 337.0 196 81.1
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 9.4e-91 337.0 199 82.4
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 3.6e-90 335.1 196 80.6
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.6e-90 335.1 198 81.3
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 3.6e-90 335.1 198 81.3
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 3.6e-90 335.1 196 80.6
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.6e-90 335.1 198 81.3
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 3.6e-90 335.1 196 80.6
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.6e-90 335.1 198 81.3
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 6.1e-90 334.3 198 81.3
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 6.1e-90 334.3 196 80.1
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 6.1e-90 334.3 196 80.1
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 8.0e-90 334.0 198 80.8
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 6.7e-89 330.9 197 78.2
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 4.4e-88 328.2 198 78.8
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.7e-87 325.1 198 78.3
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.4e-86 322.4 198 78.3
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 3.5e-85 318.5 192 77.6
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 7.7e-85 317.4 197 75.6
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.7e-84 316.2 197 75.1
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 2.9e-84 315.5 197 75.6
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.8e-84 315.1 197 72.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 5.0e-84 314.7 194 75.3
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.5e-84 314.3 197 75.6
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 6.5e-84 314.3 197 75.6
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 8.5e-84 313.9 197 75.1
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 8.5e-84 313.9 197 75.1
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 8.5e-84 313.9 197 75.1
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.1e-83 313.5 197 72.6
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.1e-83 313.5 197 75.1
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.5e-83 313.2 193 76.2
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.9e-83 312.8 197 72.1
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 1.9e-83 312.8 193 76.7
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 2.5e-83 312.4 197 72.6
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.2e-83 312.0 197 74.1
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 3.2e-83 312.0 195 74.9
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 4.2e-83 311.6 197 72.1
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 4.2e-83 311.6 197 74.1
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 7.2e-83 310.8 197 73.1
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 9.4e-83 310.5 196 73.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.2e-82 310.1 197 72.6
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.2e-82 310.1 197 73.1
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 2.1e-82 309.3 197 72.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.7e-82 308.9 195 73.3
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 3.6e-82 308.5 197 72.1
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 3.6e-82 308.5 195 73.3
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 3.6e-82 308.5 191 75.9
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 4.7e-82 308.1 197 73.1
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 8.0e-82 307.4 196 73.0
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 8.0e-82 307.4 197 71.6
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.0e-81 307.0 197 71.1
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.4e-81 306.6 194 73.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 4.0e-81 305.1 196 70.9
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 4.0e-81 305.1 197 70.6
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 5.2e-81 304.7 197 71.1
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.8e-81 304.3 192 71.4
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.8e-81 304.3 197 70.6
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.2e-80 303.5 191 74.3
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.5e-80 303.1 196 72.4
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.0e-80 302.8 194 71.1
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 2.6e-80 302.4 197 71.6
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 3.4e-80 302.0 191 73.8
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 3.4e-80 302.0 192 71.4
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 4.4e-80 301.6 197 69.0
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 5.7e-80 301.2 192 71.9
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.7e-79 299.7 189 73.0
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 3.7e-79 298.5 193 73.1
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 6.3e-79 297.7 189 73.0
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 6.3e-79 297.7 197 69.5
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 6.3e-79 297.7 189 72.5
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 6.3e-79 297.7 189 72.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.8e-78 296.2 192 69.8
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 2.4e-78 295.8 184 75.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.4e-78 295.8 188 71.8
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 3.1e-78 295.4 188 71.8
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 3.1e-78 295.4 188 71.8
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 3.1e-78 295.4 190 73.7
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 5.4e-78 294.7 192 69.3
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 9.1e-78 293.9 191 69.6
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 9.1e-78 293.9 184 73.4
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.3e-76 290.0 191 68.6
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.5e-75 286.6 183 72.7
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.9e-75 286.2 185 71.4
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.9e-75 286.2 185 71.4
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 7.2e-75 284.3 195 66.2
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 2.1e-74 282.7 231 60.6
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 8.0e-74 280.8 179 74.3
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.4e-73 280.0 167 80.8
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 2.3e-73 279.3 178 72.5
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 3.0e-73 278.9 192 67.7
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-72 276.2 186 71.0
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.4e-72 275.0 186 69.9
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 7.5e-72 274.2 172 73.3
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.7e-71 273.1 193 67.4
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 4.9e-71 271.6 201 61.7
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 6.3e-71 271.2 164 76.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 3.1e-70 268.9 162 75.9
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 7.8e-69 264.2 182 67.0
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 5.0e-68 261.5 190 64.2
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.9e-67 259.6 194 62.4
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.9e-67 259.6 194 62.4
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 2.5e-67 259.2 167 70.7
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.3e-67 257.7 196 61.7
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 7.3e-67 257.7 155 76.8
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.6e-66 256.5 196 61.2
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 8.0e-66 254.2 194 62.4
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 8.0e-66 254.2 196 60.2
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.0e-65 251.9 189 64.6
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 5.2e-65 251.5 159 71.7
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.2e-64 250.4 186 62.9
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.5e-64 250.0 165 70.9
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.6e-64 249.2 156 76.3
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.9e-63 245.7 180 63.9
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.9e-63 245.7 150 78.0
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.4e-62 241.5 156 74.4
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 2.0e-61 239.6 194 58.2
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 4.6e-61 238.4 161 68.3
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.3e-59 231.9 165 66.1
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 7.3e-59 231.1 151 72.8
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.6e-58 229.9 135 76.3
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.8e-57 226.5 155 69.7
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.6e-56 222.6 145 72.4
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.4e-54 216.9 117 83.8
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.9e-54 216.5 188 57.4
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.6e-53 213.4 196 55.1
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 2.5e-51 206.1 192 52.1
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 6.4e-47 191.4 110 82.7
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.1e-43 180.6 103 79.6
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.9e-43 179.9 194 46.4
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 2.5e-43 179.5 188 47.3
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.3e-43 178.7 195 45.6
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 3.9e-36 155.6 109 65.1
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.1e-35 154.1 105 66.7
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 3.3e-35 152.5 79 87.3
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.6e-34 150.2 83 80.7
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.3e-28 129.8 88 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.8e-26 122.9 109 56.9
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.4e-24 115.9 76 69.7
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 9.9e-24 114.4 70 72.9
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 3.7e-18 95.9 69 68.1
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.7e-12 75.1 55 67.3
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 3.8e-07 59.3 208 24.5
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 9.3e-06 54.7 150 25.3


User provided reference genes

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