Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0790 Capsella rubella HOM05D002263 ORTHO05D004843 1.5e-40 169.1 87 100.0
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 2.8e-10 68.6 73 49.3
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.8e-10 68.6 76 46.1
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.8e-10 68.6 76 46.1
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 8.1e-10 67.0 85 43.5
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 1.4e-09 66.2 84 41.7
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 3.1e-09 65.1 84 40.5
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 4.0e-09 64.7 72 43.1
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 4.0e-09 64.7 72 43.1
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 4.0e-09 64.7 72 43.1
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 4.0e-09 64.7 79 43.0
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 5.3e-09 64.3 76 47.4
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 5.3e-09 64.3 80 42.5
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 9.0e-09 63.5 72 45.8
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 9.0e-09 63.5 79 41.8
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 1.2e-08 63.2 79 41.8
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 1.2e-08 63.2 72 44.4
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.2e-08 63.2 79 40.5
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 2.0e-08 62.4 76 42.1
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.0e-08 62.4 76 40.8
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 2.0e-08 62.4 77 40.3
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 2.6e-08 62.0 76 42.1
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 2.6e-08 62.0 76 43.4
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 2.6e-08 62.0 76 43.4
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 2.6e-08 62.0 76 43.4
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 3.4e-08 61.6 76 39.5
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 3.4e-08 61.6 76 39.5
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 3.4e-08 61.6 76 39.5
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 3.4e-08 61.6 79 39.2
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 3.4e-08 61.6 72 45.8
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 4.4e-08 61.2 79 39.2
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 4.4e-08 61.2 76 40.8
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 4.4e-08 61.2 76 42.1
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.4e-08 61.2 79 39.2
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 5.8e-08 60.8 86 41.9
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 5.8e-08 60.8 76 39.5
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 5.8e-08 60.8 76 38.2
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 5.8e-08 60.8 76 39.5
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 5.8e-08 60.8 76 38.2
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 5.8e-08 60.8 79 40.5
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 5.8e-08 60.8 76 43.4
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 7.6e-08 60.5 84 40.5
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 7.6e-08 60.5 80 38.8
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 7.6e-08 60.5 76 38.2
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 7.6e-08 60.5 79 40.5
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 7.6e-08 60.5 79 39.2
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 7.6e-08 60.5 79 39.2
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 7.6e-08 60.5 76 43.4
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 7.6e-08 60.5 76 43.4
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 9.9e-08 60.1 76 43.4
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 9.9e-08 60.1 79 39.2
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 9.9e-08 60.1 79 39.2
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 9.9e-08 60.1 76 39.5
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 1.3e-07 59.7 76 38.2
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.7e-07 59.3 79 39.2
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 1.7e-07 59.3 76 40.8
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.7e-07 59.3 79 39.2
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 1.7e-07 59.3 76 38.2
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 2.2e-07 58.9 79 38.0
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 2.2e-07 58.9 76 38.2
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 2.2e-07 58.9 79 38.0
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.9e-07 58.5 85 41.2
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 2.9e-07 58.5 79 39.2
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 3.8e-07 58.2 84 40.5
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 3.8e-07 58.2 79 34.2
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 3.8e-07 58.2 76 42.1
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 3.8e-07 58.2 76 40.8
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 3.8e-07 58.2 80 37.5
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 3.8e-07 58.2 61 49.2
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 3.8e-07 58.2 79 38.0
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 3.8e-07 58.2 76 36.8
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 4.9e-07 57.8 79 36.7
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 4.9e-07 57.8 76 40.8
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 4.9e-07 57.8 76 40.8
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 4.9e-07 57.8 76 42.1
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 4.9e-07 57.8 79 39.2
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 6.4e-07 57.4 86 39.5
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 6.4e-07 57.4 65 43.1
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 6.4e-07 57.4 79 35.4
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 8.4e-07 57.0 76 42.1
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 8.4e-07 57.0 76 34.2
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 1.1e-06 56.6 76 36.8
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 1.1e-06 56.6 79 36.7
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.1e-06 56.6 79 35.4
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 1.4e-06 56.2 81 37.0
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 1.4e-06 56.2 71 42.3
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.9e-06 55.8 79 35.4
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 2.4e-06 55.5 76 36.8
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 2.4e-06 55.5 84 34.5
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 3.2e-06 55.1 84 36.9
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 3.2e-06 55.1 76 36.8
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 4.2e-06 54.7 77 41.6
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 4.2e-06 54.7 82 37.8
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 5.4e-06 54.3 73 37.0
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 5.4e-06 54.3 82 35.4
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 5.4e-06 54.3 76 34.2
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 7.1e-06 53.9 79 35.4
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 7.1e-06 53.9 79 36.7
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 7.1e-06 53.9 79 36.7
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 7.1e-06 53.9 79 36.7
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 7.1e-06 53.9 79 36.7
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 7.1e-06 53.9 79 36.7
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 7.1e-06 53.9 84 35.7
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 7.1e-06 53.9 79 36.7
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 9.3e-06 53.5 71 39.4
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 9.3e-06 53.5 84 34.5


User provided reference genes

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