Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 8.0e-233 810.1 414 100.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.9e-230 801.6 414 98.6
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.0e-227 793.1 414 97.8
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 3.0e-227 791.6 414 97.3
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 5.1e-227 790.8 414 96.9
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 5.1e-227 790.8 414 96.9
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-226 788.5 414 96.6
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.3e-226 787.7 414 97.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 8.1e-225 783.5 414 96.1
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 4.0e-224 781.2 414 96.1
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-223 778.9 414 95.9
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-222 775.0 426 93.7
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.4e-221 772.7 426 93.4
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.4e-221 772.7 426 93.4
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.7e-217 757.7 414 94.0
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.9e-213 745.7 414 91.3
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 9.3e-213 743.4 414 90.8
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 6.9e-208 727.2 416 90.6
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.5e-202 708.8 414 86.2
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.6e-199 698.7 414 84.5
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 4.5e-199 698.0 414 85.3
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 4.9e-198 694.5 409 85.1
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.4e-197 692.2 414 83.8
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 83.1
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 4.3e-194 681.4 414 82.1
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 83.3
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.3e-193 679.9 410 83.4
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.6e-193 679.5 416 83.2
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 81.9
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.1e-193 679.1 414 81.6
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 82.6
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 82.6
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 81.6
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.8e-193 677.9 414 81.4
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 8.1e-193 677.2 414 82.4
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-192 676.8 414 81.4
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.4e-192 676.4 413 82.3
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 4.0e-192 674.9 414 81.4
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 4.0e-192 674.9 414 81.2
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.2e-191 673.3 414 81.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 2.0e-191 672.5 411 82.7
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 5.8e-191 671.0 414 81.6
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 2.2e-190 669.1 418 84.2
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 8.4e-190 667.2 414 81.6
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.1e-189 666.8 413 81.1
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.4e-189 666.4 413 80.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.9e-189 666.0 414 81.6
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 3.2e-189 665.2 414 81.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 4.2e-189 664.8 413 80.9
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 4.2e-189 664.8 445 76.9
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.1e-188 662.5 413 80.9
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.5e-188 661.8 411 81.0
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 3.5e-188 661.8 414 80.9
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 4.6e-188 661.4 409 82.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 81.4
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.0e-187 660.2 411 81.3
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.3e-187 659.8 411 81.3
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 3.0e-187 658.7 409 79.5
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 6.7e-187 657.5 411 80.8
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.1e-186 656.8 414 79.0
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 2.5e-186 655.6 415 80.5
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.3e-186 655.2 414 79.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.7e-185 651.7 414 79.2
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 3.7e-185 651.7 413 79.4
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.4e-184 649.8 413 79.4
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.1e-184 648.7 414 79.0
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 4.1e-184 648.3 413 79.9
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.5e-183 646.4 414 79.2
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 5.8e-183 644.4 414 78.7
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 2.2e-182 642.5 414 78.5
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.2e-182 642.5 413 78.2
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.9e-182 642.1 414 78.3
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 3.8e-182 641.7 413 79.7
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.8e-182 641.7 413 77.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.1e-181 640.2 410 78.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.9e-181 639.4 413 77.2
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 7.2e-181 637.5 416 78.4
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 9.3e-181 637.1 414 77.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.1e-178 630.2 420 76.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.9e-178 629.4 420 76.2
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.3e-178 628.6 371 85.2
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 7.4e-178 627.5 412 76.9
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 7.4e-178 627.5 375 84.0
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 9.7e-178 627.1 415 78.3
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.3e-177 626.7 430 74.7
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 4.8e-177 624.8 410 77.8
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.2e-175 620.2 439 72.9
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 4.6e-172 608.2 415 74.7
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 6.1e-172 607.8 415 74.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 8.2e-169 597.4 414 74.4
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.8e-168 596.3 413 69.5
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 9.1e-168 594.0 415 73.5
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.2e-165 585.5 410 74.6
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.0e-163 580.5 406 74.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.4e-163 580.1 305 95.7
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.4e-160 570.1 414 70.8
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 5.0e-158 561.6 411 72.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 4.7e-156 555.1 371 76.8
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 5.2e-155 551.6 410 66.8
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 6.3e-153 544.7 410 66.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 2.9e-150 535.8 323 83.3
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 6.1e-148 528.1 485 61.2
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.4e-146 522.3 412 67.5
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.2e-140 503.8 398 63.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 2.3e-139 499.6 405 59.3
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 6.8e-139 498.0 412 60.4
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-138 496.9 313 83.1
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.7e-135 484.6 282 85.5
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.8e-134 482.3 282 85.1
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.5e-133 479.6 296 80.7
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 2.3e-123 446.4 284 82.0
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.4e-122 442.6 256 86.3
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 3.7e-113 412.5 292 77.7
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 3.2e-112 409.5 256 77.3
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 2.5e-109 399.8 314 66.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 6.2e-108 395.2 285 71.6
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 2.0e-98 363.6 415 47.5
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-90 337.4 238 73.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.3e-83 312.4 191 81.2
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-80 304.7 199 77.9
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 6.0e-79 298.9 205 74.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 4.8e-76 289.3 184 77.2
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.5e-72 275.8 204 71.6
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.3e-69 266.2 173 76.9
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 3.0e-62 243.4 402 35.8
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-61 240.7 199 70.4
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-59 233.4 126 90.5
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-57 227.6 161 77.6
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 5.0e-57 226.1 403 33.5
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 6.5e-57 225.7 220 55.0
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.2e-56 222.2 139 79.9
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.2e-55 221.5 177 72.3
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.8e-54 217.6 321 36.1
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.3e-49 201.4 114 89.5
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 2.7e-47 193.7 121 77.7
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-41 174.9 102 83.3
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 3.7e-36 156.8 414 30.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-33 148.7 83 85.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.6e-31 140.2 80 83.8
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 8.3e-28 129.0 107 58.9
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 7.7e-26 122.5 115 59.1
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 4.0e-22 110.2 127 56.7
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.5e-21 108.2 143 49.7
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 6.3e-20 102.8 146 48.6
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-19 101.7 72 77.8
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-18 97.8 99 55.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.6e-17 92.4 51 86.3
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.5e-16 91.7 153 37.9
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-14 85.1 75 62.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 7.5e-13 79.3 59 74.6
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-09 67.8 57 61.4
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-08 65.5 40 80.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-07 61.6 81 44.4
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 8.9e-06 55.8 41 63.4


User provided reference genes

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