Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 0.0e+00 1421.0 730 100.0
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 0.0e+00 1334.3 732 93.0
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 0.0e+00 1320.8 732 91.9
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 0.0e+00 1266.9 730 89.0
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 0.0e+00 1253.8 732 87.7
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 0.0e+00 1221.1 736 86.3
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 0.0e+00 1171.4 733 83.2
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 0.0e+00 1165.6 733 82.8
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 0.0e+00 1161.4 737 82.6
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 0.0e+00 1160.2 734 82.7
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 0.0e+00 1156.7 734 82.4
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 0.0e+00 1151.0 735 82.0
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 0.0e+00 1140.2 732 81.4
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 1.6e-284 982.6 731 71.4
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.0e-230 803.9 728 58.8
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 4.7e-228 795.0 706 60.2
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 6.2e-228 794.7 736 58.3
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 8.1e-228 794.3 709 59.9
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 2.6e-226 789.3 650 62.5
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 3.4e-226 788.9 713 59.3
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 2.1e-223 779.6 711 57.9
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 1.7e-222 776.5 711 57.7
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 1.1e-221 773.9 714 57.8
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 2.1e-220 769.6 738 55.1
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 6.2e-220 768.1 649 59.9
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 5.8e-218 761.5 766 55.7
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 7.6e-218 761.1 656 59.8
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 9.9e-218 760.8 653 59.6
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 1.7e-217 760.0 726 55.9
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 2.9e-217 759.2 680 57.8
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 8.4e-217 757.7 687 56.8
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.9e-216 756.5 730 56.6
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 9.2e-216 754.2 661 59.6
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 1.2e-210 737.3 710 54.9
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 7.6e-210 734.6 731 53.6
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 8.4e-209 731.1 735 53.9
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 9.3e-208 727.6 695 54.8
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 3.5e-207 725.7 706 55.2
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 7.8e-207 724.5 725 55.6
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 3.9e-206 722.2 680 55.3
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 2.5e-205 719.5 733 52.9
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 3.3e-205 719.2 715 55.2
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 1.3e-204 717.2 724 51.9
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 1.5e-202 710.3 824 49.2
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 5.8e-202 708.4 717 53.0
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 2.9e-201 706.1 723 52.6
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 6.4e-201 704.9 779 50.4
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.4e-200 703.7 709 55.1
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 5.4e-200 701.8 735 52.0
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 3.5e-199 699.1 714 50.6
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 6.7e-198 694.9 685 54.0
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 8.7e-198 694.5 605 59.2
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 1.1e-197 694.1 713 53.9
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 1.5e-197 693.7 713 52.6
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.9e-197 693.3 705 53.0
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 9.6e-197 691.0 663 55.5
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 2.8e-196 689.5 744 49.7
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 1.1e-195 687.6 703 52.2
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.4e-195 687.2 642 54.8
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 1.8e-195 686.8 694 52.0
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.2e-194 684.1 713 52.0
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.6e-194 681.4 713 52.2
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 7.6e-194 681.4 650 54.0
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 9.9e-194 681.0 651 54.4
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.3e-193 680.6 698 52.4
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.7e-193 680.2 728 50.8
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 1.7e-193 680.2 690 52.8
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 4.2e-192 675.6 721 50.1
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 5.5e-192 675.2 653 53.8
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 3.0e-190 669.5 728 51.5
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 3.9e-190 669.1 674 52.4
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.3e-189 666.0 657 52.8
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 4.3e-189 665.6 657 53.0
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 5.6e-189 665.2 702 51.3
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 5.6e-189 665.2 733 51.3
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 9.6e-189 664.5 708 51.3
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 3.7e-188 662.5 659 54.5
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 1.0e-185 654.4 697 50.4
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 1.7e-185 653.7 636 53.5
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 3.8e-185 652.5 708 50.6
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 6.5e-185 651.7 699 51.2
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 5.5e-184 648.7 614 53.1
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 7.1e-184 648.3 698 51.4
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.3e-181 639.4 701 50.8
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 8.2e-180 634.8 559 57.6
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 1.1e-179 634.4 723 48.7
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 3.1e-179 632.9 680 50.9
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 6.9e-179 631.7 1073 38.9
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 5.9e-178 628.6 720 48.5
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 7.6e-178 628.2 698 49.7
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 8.2e-172 608.2 712 47.9
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.9e-167 591.7 541 54.3
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 7.4e-165 585.1 711 45.3
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 1.7e-161 573.9 618 49.8
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.9e-152 543.9 647 46.7
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.0e-145 521.5 698 44.6
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 5.0e-145 519.2 734 41.8
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.2e-141 508.1 472 54.9
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.0e-126 456.4 665 42.4
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 1.9e-107 394.4 667 37.6
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 5.1e-105 386.3 369 56.4
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 5.2e-102 376.3 300 63.7
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 3.2e-99 367.1 613 36.7
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 1.6e-98 364.8 635 35.3
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 2.7e-98 364.0 406 47.5
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 4.3e-96 356.7 621 36.1
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 2.3e-81 307.8 572 33.4
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.6e-79 301.6 256 60.5
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 5.5e-75 286.6 605 34.2
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.2e-69 268.9 686 31.6
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.5e-69 268.5 403 41.2
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.1e-56 225.7 184 59.2
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 3.2e-51 207.6 592 27.9
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 9.7e-48 196.1 634 25.6
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 1.1e-38 166.0 736 24.2
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 6.1e-34 150.2 656 26.5
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 7.0e-30 136.7 178 46.1
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 5.9e-29 133.7 469 25.4
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 7.2e-27 126.7 239 36.0
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 8.0e-26 123.2 92 72.8
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.5e-24 119.0 75 82.7
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.0e-24 118.6 162 42.6
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 6.3e-23 113.6 147 44.2
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.5e-19 101.7 127 46.5
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 6.3e-15 87.0 121 43.0
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 2.0e-13 82.0 104 38.5
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.3e-09 68.6 72 44.4
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 2.6e-08 65.1 158 33.5
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 2.9e-07 61.6 67 44.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-06 59.3 49 55.1


User provided reference genes

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