Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 4.1e-269 931.0 538 100.0
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 4.3e-194 681.8 544 76.7
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 6.4e-190 667.9 552 75.9
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 2.5e-170 602.8 548 71.7
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 1.6e-169 600.1 555 70.6
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 7.1e-165 584.7 554 68.6
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 4.5e-143 512.3 550 66.5
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 2.2e-142 510.0 550 66.4
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 4.2e-133 479.2 559 61.2
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 7.2e-133 478.4 559 62.4
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 9.4e-133 478.0 561 62.2
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 1.6e-132 477.2 553 61.7
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 2.0e-130 470.3 562 58.9
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 2.3e-94 350.5 551 46.5
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 5.3e-59 233.0 539 36.7
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 3.2e-56 223.8 428 39.7
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 7.1e-56 222.6 431 36.7
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 3.5e-55 220.3 426 38.0
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 1.0e-54 218.8 529 38.0
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 4.3e-53 213.4 428 36.4
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.6e-53 212.2 427 36.8
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.6e-52 211.5 425 39.5
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 8.2e-52 209.1 228 52.2
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 2.4e-51 207.6 268 46.3
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 1.5e-50 204.9 427 38.4
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 3.4e-50 203.8 545 35.6
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 1.0e-49 202.2 428 37.6
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.9e-49 200.7 568 36.3
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 3.8e-49 200.3 429 36.4
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 5.0e-49 199.9 425 35.3
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 5.0e-49 199.9 238 52.1
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 6.5e-49 199.5 429 36.6
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 1.9e-48 198.0 323 43.7
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 2.5e-48 197.6 332 47.9
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 3.2e-48 197.2 425 35.5
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 5.5e-48 196.4 297 40.7
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 1.6e-47 194.9 450 35.1
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 4.6e-47 193.4 491 33.4
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 6.1e-47 193.0 518 36.7
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 7.9e-47 192.6 427 34.0
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.3e-46 191.8 430 32.6
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 2.3e-46 191.0 507 36.9
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 3.0e-46 190.7 422 34.6
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 3.0e-46 190.7 573 36.5
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 5.1e-46 189.9 364 42.3
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 5.1e-46 189.9 416 34.9
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.1e-45 188.7 430 34.4
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 1.1e-45 188.7 481 35.1
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.1e-45 188.7 253 43.5
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.5e-45 187.6 581 36.3
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.5e-45 187.6 488 37.1
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 3.3e-45 187.2 435 34.7
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 3.3e-45 187.2 428 36.4
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 3.3e-45 187.2 418 34.4
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 3.3e-45 187.2 424 35.1
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 4.3e-45 186.8 531 36.3
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 4.3e-45 186.8 419 35.6
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 4.3e-45 186.8 269 44.6
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 7.4e-45 186.0 439 36.2
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 7.4e-45 186.0 424 34.2
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 7.4e-45 186.0 420 34.0
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 9.7e-45 185.7 430 35.1
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 9.7e-45 185.7 425 35.8
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.3e-44 185.3 420 34.0
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 2.2e-44 184.5 453 35.1
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 2.8e-44 184.1 424 34.7
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 4.8e-44 183.3 267 41.2
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 8.2e-44 182.6 170 53.5
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 8.2e-44 182.6 523 31.0
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.8e-43 181.4 424 34.2
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 2.4e-43 181.0 428 35.5
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 3.1e-43 180.6 569 33.6
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 3.1e-43 180.6 517 32.5
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 6.9e-43 179.5 424 35.1
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 1.2e-42 178.7 265 44.5
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 2.6e-42 177.6 220 45.9
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 2.6e-42 177.6 255 41.2
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 3.4e-42 177.2 431 35.0
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 4.5e-42 176.8 575 34.8
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 1.7e-41 174.9 381 39.9
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 2.2e-41 174.5 416 34.6
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 2.9e-41 174.1 275 39.6
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 1.9e-40 171.4 425 33.4
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 5.5e-40 169.9 285 41.8
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.2e-39 168.7 433 32.8
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 2.7e-39 167.5 453 30.2
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 6.1e-39 166.4 279 41.9
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.4e-38 165.2 243 41.6
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 2.3e-38 164.5 263 40.3
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 6.7e-38 162.9 265 41.5
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 2.0e-37 161.4 172 47.7
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 2.5e-37 161.0 214 41.1
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 1.1e-35 155.6 454 31.9
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 2.2e-33 147.9 163 45.4
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 3.9e-30 137.1 153 47.7
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 2.9e-25 120.9 154 42.2
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 6.5e-25 119.8 161 42.9
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 1.1e-24 119.0 400 32.2
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 2.5e-24 117.9 418 30.6
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 2.5e-24 117.9 418 30.6
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 3.2e-24 117.5 359 30.6
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 1.2e-23 115.5 215 40.5
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 8.0e-23 112.8 330 31.2
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 8.8e-22 109.4 330 30.0
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 1.5e-21 108.6 334 32.3
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 5.7e-21 106.7 236 31.8
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 9.7e-21 105.9 348 29.3
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 8.2e-20 102.8 135 45.2
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 2.7e-18 97.8 83 55.4
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 2.9e-17 94.4 449 26.7
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 2.6e-13 81.3 64 57.8
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 7.5e-13 79.7 68 58.8
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 5.0e-09 67.0 70 51.4
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 6.5e-09 66.6 51 62.7


User provided reference genes

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