Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 2.3e-158 562.4 329 100.0
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 8.0e-151 537.3 329 86.3
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 8.0e-151 537.3 329 89.7
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 2.0e-149 532.7 330 82.7
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 1.7e-145 519.6 333 81.1
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 4.9e-140 501.5 335 87.8
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 4.9e-140 501.5 335 82.4
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 4.9e-140 501.5 335 82.4
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 5.4e-139 498.0 335 81.8
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 5.4e-139 498.0 335 81.8
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.2e-138 496.9 334 90.7
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 4.3e-136 488.4 353 73.9
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 2.1e-119 433.0 225 90.7
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 3.1e-118 429.1 329 66.9
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 4.0e-118 428.7 225 89.3
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.0e-117 426.4 225 88.9
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 2.6e-117 426.0 226 89.4
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 3.4e-117 425.6 220 89.5
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 3.4e-117 425.6 220 89.5
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 3.4e-117 425.6 220 90.5
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 9.9e-117 424.1 225 86.7
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.7e-116 423.3 225 88.0
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.2e-116 422.9 225 88.9
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 4.9e-116 421.8 225 88.9
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 4.9e-116 421.8 224 87.9
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 1.1e-115 420.6 223 86.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.4e-115 420.2 221 89.1
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.9e-115 419.9 224 87.1
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.9e-115 419.9 225 87.1
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.9e-115 419.9 225 85.3
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 7.1e-115 417.9 225 86.7
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.7e-114 416.0 225 85.8
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 4.6e-114 415.2 225 86.7
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 4.6e-114 415.2 225 85.3
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 6.0e-114 414.8 225 86.2
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 7.8e-114 414.5 223 87.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.3e-113 413.7 225 86.7
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.3e-113 413.7 220 87.3
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.7e-113 413.3 225 85.8
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.3e-113 412.9 220 87.3
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 5.1e-113 411.8 225 87.1
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.1e-112 410.6 225 84.0
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.9e-112 409.8 225 84.0
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 1.9e-112 409.8 225 84.0
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 4.3e-112 408.7 225 84.0
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 9.6e-112 407.5 225 85.8
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-111 407.1 206 95.1
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.2e-111 407.1 225 85.3
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 2.1e-111 406.4 225 85.8
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 2.8e-111 406.0 225 84.0
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 3.6e-111 405.6 225 84.9
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 4.7e-111 405.2 225 84.9
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 8.1e-111 404.4 225 83.6
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 8.1e-111 404.4 225 84.9
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 1.1e-110 404.1 225 82.2
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.4e-110 403.7 225 82.7
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-110 403.7 225 82.7
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.4e-110 403.7 225 82.7
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.8e-110 403.3 225 82.7
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.4e-110 402.9 220 85.5
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 3.1e-110 402.5 225 84.4
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 3.1e-110 402.5 225 84.0
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.1e-110 402.5 225 82.7
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 3.1e-110 402.5 225 82.2
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.0e-110 402.1 225 84.0
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 5.2e-110 401.7 225 81.8
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 6.9e-110 401.4 225 82.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 4.4e-109 398.7 225 82.2
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 7.6e-109 397.9 311 68.8
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 9.9e-109 397.5 225 82.2
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.7e-108 396.7 225 81.3
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 2.2e-108 396.4 225 80.9
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 3.8e-108 395.6 225 82.2
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 4.9e-108 395.2 225 81.3
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.4e-107 393.7 225 81.8
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 3.2e-107 392.5 225 80.0
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.6e-106 390.2 224 83.0
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 2.7e-106 389.4 225 80.4
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.1e-104 384.0 225 80.4
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.1e-104 384.0 225 80.4
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.5e-104 383.6 213 84.0
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.5e-104 383.6 225 77.8
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 4.3e-104 382.1 219 81.7
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 6.2e-103 378.3 218 82.6
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.4e-102 377.1 263 74.9
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 8.4e-100 367.9 220 80.5
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 9.0e-94 347.8 224 74.1
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.5e-93 347.1 225 72.0
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.5e-93 347.1 225 72.0
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 4.5e-93 345.5 185 86.5
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.1e-91 340.9 171 95.9
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.6e-90 337.0 225 69.3
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 4.2e-83 312.4 259 61.4
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 5.1e-81 305.4 224 68.3
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.5e-80 303.9 224 67.9
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.5e-80 303.9 220 61.8
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 3.3e-80 302.8 372 47.0
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 4.3e-80 302.4 157 88.5
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.3e-79 300.8 157 88.5
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 5.5e-75 285.4 144 95.8
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.2e-74 284.3 224 64.7
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.2e-74 284.3 167 81.4
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 6.1e-74 282.0 220 59.5
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.4e-70 270.8 225 57.8
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.9e-59 233.8 205 54.1
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.0e-57 228.0 182 62.1
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.8e-57 227.3 112 89.3
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 5.2e-57 225.7 117 84.6
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.0e-56 223.8 221 57.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.5e-53 213.0 175 61.7
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 9.8e-40 168.3 127 66.9
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 6.3e-39 165.6 96 79.2
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 5.4e-38 162.5 109 73.4
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 2.3e-36 157.1 81 86.4
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.7e-31 141.0 175 39.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.5e-29 132.9 155 47.7
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 5.0e-28 129.4 62 95.2
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 7.8e-21 105.5 78 62.8
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.8e-13 79.0 48 77.1
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.7e-12 77.8 43 86.0
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-09 68.2 82 47.6
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-09 68.2 82 47.6


User provided reference genes

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