Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30191_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 2.3e-31 138.3 69 100.0
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 4.4e-19 97.4 48 100.0
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 1.1e-17 92.8 48 91.7
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 3.5e-16 87.8 48 87.5
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 4.6e-16 87.4 48 85.4
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 1.3e-15 85.9 49 87.8
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 1.7e-15 85.5 47 87.2
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 1.1e-14 82.8 48 81.2
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 4.3e-14 80.9 49 81.6
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 4.3e-14 80.9 49 81.6
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 5.6e-14 80.5 49 77.6
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 1.3e-13 79.3 49 83.7
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 1.6e-13 79.0 49 83.7
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 2.8e-13 78.2 48 72.9
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 2.8e-13 78.2 48 77.1
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 3.6e-13 77.8 49 79.6
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 4.8e-13 77.4 49 79.6
Atru.chr7.2525 Acer truncatum HOM05D000104 ORTHO05D003467 6.2e-13 77.0 49 75.5
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 1.1e-12 76.3 48 79.2
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 1.1e-12 76.3 48 79.2
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 1.1e-12 76.3 48 79.2
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 1.8e-12 75.5 49 77.6
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 1.8e-12 75.5 49 75.5
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 1.8e-12 75.5 49 77.6
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 2.4e-12 75.1 48 77.1
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 3.1e-12 74.7 49 75.5
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 4.0e-12 74.3 48 79.2
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 4.0e-12 74.3 49 77.6
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 5.3e-12 73.9 48 77.1
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 5.3e-12 73.9 49 73.5
COL.COLO4_18938 Corchorus olitorius HOM05D000104 ORTHO05D003467 1.2e-11 72.8 49 73.5
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 2.6e-11 71.6 49 73.5
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 2.6e-11 71.6 49 73.5
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 2.6e-11 71.6 61 59.0
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 2.6e-11 71.6 49 71.4
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 3.4e-11 71.2 49 73.5
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 4.5e-11 70.9 48 68.8
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 5.8e-11 70.5 49 73.5
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 7.6e-11 70.1 48 72.9
Nn2g10435 Nelumbo nucifera HOM05D000104 ORTHO05D003467 7.6e-11 70.1 49 67.3
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 7.6e-11 70.1 49 67.3
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 9.9e-11 69.7 64 59.4
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 1.3e-10 69.3 49 69.4
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 1.7e-10 68.9 48 70.8
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 3.8e-10 67.8 48 68.8
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 4.9e-10 67.4 48 70.8
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 4.9e-10 67.4 49 71.4
Gohir.D13G187900 Gossypium hirsutum HOM05D000104 ORTHO05D003467 6.4e-10 67.0 49 63.3
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 6.4e-10 67.0 49 63.3
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 8.4e-10 66.6 48 68.8
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 8.4e-10 66.6 49 63.3
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 1.1e-09 66.2 48 68.8
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 1.1e-09 66.2 49 67.3
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 1.4e-09 65.9 48 68.8
CANSAT64G1059 Cannabis sativa HOM05D005818 ORTHO05D007275 1.4e-09 65.9 48 66.7
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 1.9e-09 65.5 48 66.7
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 1.9e-09 65.5 48 66.7
FAN20G0395 Fragaria x ananassa HOM05D000104 ORTHO05D003467 1.9e-09 65.5 48 72.9
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 1.9e-09 65.5 48 68.8
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 1.9e-09 65.5 48 66.7
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 2.4e-09 65.1 49 71.4
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 3.2e-09 64.7 48 66.7
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 3.2e-09 64.7 51 66.7
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 4.2e-09 64.3 49 67.3
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 4.2e-09 64.3 56 58.9
Nitab4.5_0000486g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 4.2e-09 64.3 48 60.4
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 4.2e-09 64.3 56 58.9
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 4.2e-09 64.3 56 60.7
Nitab4.5_0002973g0050 Nicotiana tabacum HOM05D000104 ORTHO05D003467 5.4e-09 63.9 49 61.2
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 5.4e-09 63.9 49 67.3
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 5.4e-09 63.9 51 66.7
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 5.4e-09 63.9 48 64.6
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 7.1e-09 63.5 48 64.6
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 7.1e-09 63.5 49 61.2
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 9.3e-09 63.2 49 67.3
CSS0003293 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 1.2e-08 62.8 56 51.8
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 1.2e-08 62.8 48 68.8
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.2e-08 62.8 48 64.6
vmacro11233 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 1.2e-08 62.8 51 66.7
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 1.6e-08 62.4 48 62.5
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 1.6e-08 62.4 48 64.6
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 1.6e-08 62.4 48 64.6
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 1.6e-08 62.4 48 64.6
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 1.6e-08 62.4 48 64.6
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 1.6e-08 62.4 48 64.6
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 1.6e-08 62.4 48 60.4
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 1.6e-08 62.4 48 60.4
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 2.1e-08 62.0 48 60.4
vmacro05141 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 2.1e-08 62.0 48 62.5
Actinidia22305 Actinidia chinensis HOM05D000104 ORTHO05D003467 3.5e-08 61.2 51 64.7
CAN.G36.11 Capsicum annuum HOM05D000104 ORTHO05D003467 4.6e-08 60.8 48 60.4
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 6.0e-08 60.5 51 60.8
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 6.0e-08 60.5 48 64.6
Medtr1g013190 Medicago truncatula HOM05D000104 ORTHO05D003467 7.9e-08 60.1 49 67.3
DCAR_003002 Daucus carota HOM05D000104 ORTHO05D003467 1.0e-07 59.7 48 56.2
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 1.0e-07 59.7 48 60.4
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 1.0e-07 59.7 48 64.6
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 1.3e-07 59.3 58 55.2
CDE06G2391 Ceratophyllum demersum HOM05D000104 ORTHO05D003467 1.8e-07 58.9 51 56.9
AUR62012463 Chenopodium quinoa HOM05D000104 ORTHO05D003467 1.8e-07 58.9 48 62.5
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 1.8e-07 58.9 48 62.5
Oeu000758.1 Olea europaea HOM05D000104 ORTHO05D003467 1.8e-07 58.9 55 63.6
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 3.0e-07 58.2 49 65.3
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 3.9e-07 57.8 49 53.1
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 5.1e-07 57.4 47 57.4
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 6.7e-07 57.0 48 58.3
HanXRQChr01g0030691 Helianthus annuus HOM05D000104 ORTHO05D003467 6.7e-07 57.0 48 58.3
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 6.7e-07 57.0 51 62.7
Rhsim07G0163200 Rhododendron simsii HOM05D000104 ORTHO05D003467 6.7e-07 57.0 57 50.9
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 2.5e-06 55.1 49 61.2
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 2.5e-06 55.1 49 61.2
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 2.5e-06 55.1 49 61.2
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 3.3e-06 54.7 48 54.2
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 3.3e-06 54.7 48 58.3
TPR.G38867 Trifolium pratense HOM05D000104 ORTHO05D003467 4.3e-06 54.3 49 61.2
Ah.16g104930 Amaranthus hybridus HOM05D000104 ORTHO05D003467 5.6e-06 53.9 48 60.4
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 5.6e-06 53.9 48 58.3


User provided reference genes

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