Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.9e-198 695.7 355 100.0
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.9e-198 695.7 355 100.0
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 3.1e-156 555.4 360 80.3
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 6.8e-148 527.7 351 77.8
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 3.5e-144 515.4 355 73.8
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 4.7e-141 505.0 353 72.8
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 3.8e-138 495.4 354 72.3
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.7e-135 486.5 355 69.3
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 7.6e-123 444.5 370 62.4
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 7.1e-121 438.0 353 64.9
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 9.6e-118 427.6 359 66.9
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 2.7e-104 382.9 366 57.1
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 2.5e-97 359.8 347 55.0
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 4.2e-97 359.0 349 53.6
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.4e-95 354.0 292 61.0
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 5.7e-94 348.6 349 54.4
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.8e-93 346.3 293 59.4
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.4e-92 344.0 318 54.4
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 3.1e-92 342.8 356 52.5
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.1e-92 342.4 348 54.0
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.2e-91 340.9 289 59.9
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.5e-91 340.5 348 53.7
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 2.0e-91 340.1 351 51.3
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 5.9e-91 338.6 350 52.0
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 7.7e-91 338.2 352 53.4
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 1.0e-90 337.8 355 50.7
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.0e-90 337.8 350 51.1
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 2.9e-90 336.3 279 58.4
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.8e-90 335.9 346 52.3
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 6.5e-90 335.1 348 50.0
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 6.5e-90 335.1 287 57.8
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.1e-89 334.3 350 50.6
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 2.5e-89 333.2 296 56.8
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 5.5e-89 332.0 353 49.9
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.2e-88 330.9 284 57.4
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.6e-88 330.5 346 52.9
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 6.1e-88 328.6 281 58.4
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 2.3e-87 326.6 266 59.4
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 2.3e-87 326.6 312 54.8
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 3.0e-87 326.2 285 55.1
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 3.0e-87 326.2 296 56.4
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 5.2e-87 325.5 353 50.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 5.2e-87 325.5 353 50.1
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 6.7e-87 325.1 268 59.7
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 8.8e-87 324.7 279 58.8
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 8.8e-87 324.7 289 56.4
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.1e-86 324.3 351 49.9
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.1e-86 324.3 279 56.3
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.1e-86 324.3 277 57.4
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 1.1e-86 324.3 291 55.7
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.1e-86 324.3 348 48.9
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 1.5e-86 323.9 350 49.7
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.5e-86 323.9 312 52.6
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.5e-86 323.9 345 50.4
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.6e-86 323.2 348 48.6
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 2.6e-86 323.2 348 48.6
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 2.6e-86 323.2 273 58.2
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 3.3e-86 322.8 291 55.3
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.4e-86 322.4 269 57.6
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 5.7e-86 322.0 314 53.2
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 7.4e-86 321.6 332 50.0
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.7e-85 320.5 348 50.6
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 2.2e-85 320.1 264 58.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.2e-85 320.1 318 50.9
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.8e-85 319.7 272 57.4
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 2.8e-85 319.7 351 48.1
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 3.7e-85 319.3 304 54.3
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 4.8e-85 318.9 288 54.5
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 6.3e-85 318.5 352 48.9
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 6.3e-85 318.5 352 48.9
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 8.2e-85 318.2 259 57.5
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 8.2e-85 318.2 298 54.0
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.1e-84 317.8 274 57.7
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 1.1e-84 317.8 341 49.6
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.8e-84 317.0 353 49.3
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 2.4e-84 316.6 353 49.3
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.4e-84 316.6 321 52.3
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 4.1e-84 315.8 298 53.7
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 4.1e-84 315.8 264 57.6
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.1e-84 315.8 304 53.6
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 7.0e-84 315.1 349 50.1
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.6e-83 313.9 265 58.5
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.0e-83 313.5 232 64.2
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.0e-82 311.2 264 57.2
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.3e-82 310.8 349 45.8
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 3.8e-82 309.3 328 48.5
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 3.8e-82 309.3 351 48.4
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 6.5e-82 308.5 295 54.9
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.1e-81 307.8 349 49.0
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.1e-81 307.8 348 47.4
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.9e-81 307.0 278 53.6
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.5e-81 306.6 349 47.9
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.2e-80 304.3 337 48.4
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 2.1e-80 303.5 351 46.4
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 2.1e-80 303.5 354 47.7
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.7e-80 303.1 349 47.9
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 6.1e-80 302.0 402 43.8
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 2.3e-79 300.1 349 48.4
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.0e-79 299.3 349 47.9
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 6.8e-79 298.5 349 46.4
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.4e-76 290.0 350 46.9
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 3.5e-75 286.2 204 67.2
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.3e-74 284.3 240 58.3
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 2.9e-74 283.1 349 44.7
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 3.2e-73 279.6 235 58.7
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 4.0e-71 272.7 290 49.7
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.8e-70 268.1 208 64.9
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 2.2e-69 266.9 207 62.8
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 4.5e-67 259.2 289 47.4
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.9e-57 227.3 170 67.1
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 6.1e-56 222.2 253 49.0
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 3.1e-55 219.9 235 51.5
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 3.1e-55 219.9 235 51.5
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.5e-54 217.6 278 44.2
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 7.5e-54 215.3 334 39.8
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 7.5e-54 215.3 208 50.5
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 6.4e-53 212.2 237 49.4
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 6.6e-50 202.2 240 48.3
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 4.3e-49 199.5 232 45.7
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.5e-46 191.0 203 52.7
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 2.6e-46 190.3 328 35.4
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.1e-44 183.0 134 61.2
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 8.6e-42 175.3 349 33.8
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 1.8e-39 167.5 281 33.5
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 3.1e-39 166.8 223 43.9
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-37 160.2 225 43.1
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 1.2e-35 154.8 201 41.3
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.2e-35 154.8 166 48.8
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 2.1e-32 144.1 131 54.2
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.8e-31 141.0 202 41.1
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 2.4e-31 140.6 407 29.2
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 4.0e-31 139.8 109 59.6
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 5.2e-31 139.4 268 36.2
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.3e-29 134.8 110 59.1
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 9.9e-22 108.6 286 28.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.9e-17 94.4 198 30.8
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.3e-10 70.9 142 34.5
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 2.3e-10 70.9 199 26.1
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 3.3e-09 67.0 87 42.5
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.1e-08 64.3 78 38.5


User provided reference genes

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