Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28662_v3 Cicer arietinum L. HOM05D002765 ORTHO05D003083 1.1e-71 273.1 133 100.0
CARHR106610 Cardamine hirsuta HOM05D002765 ORTHO05D003083 4.4e-15 85.1 145 38.6
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 5.7e-15 84.7 148 36.5
THA.LOC104819616 Tarenaya hassleriana HOM05D002765 ORTHO05D003083 7.5e-15 84.3 145 37.9
Thecc.08G032100 Theobroma cacao HOM05D002765 ORTHO05D003083 9.8e-15 84.0 145 37.2
BcaB08g34643 Brassica carinata HOM05D002765 ORTHO05D003083 1.3e-14 83.6 149 36.9
BcaC01g03030 Brassica carinata HOM05D002765 ORTHO05D003083 1.3e-14 83.6 148 36.5
C03p56960 Brassica napus HOM05D002765 ORTHO05D003083 1.3e-14 83.6 148 36.5
BolC3t17974H Brassica oleracea HOM05D002765 ORTHO05D003083 1.3e-14 83.6 148 36.5
Carub.0003s3013 Capsella rubella HOM05D002765 ORTHO05D003083 1.3e-14 83.6 145 37.9
AT2G16370 Arabidopsis thaliana HOM05D002765 ORTHO05D003083 1.7e-14 83.2 145 37.9
Gohir.D01G004300 Gossypium hirsutum HOM05D002765 ORTHO05D003083 1.7e-14 83.2 145 37.9
Gorai.002G005200 Gossypium raimondii HOM05D002765 ORTHO05D003083 1.7e-14 83.2 145 37.9
AL3G52520 Arabidopsis lyrata HOM05D002765 ORTHO05D003083 2.2e-14 82.8 145 37.2
Duzib248G0192 Durio zibethinus HOM05D002765 ORTHO05D003083 2.2e-14 82.8 145 37.2
Gohir.A03G196200 Gossypium hirsutum HOM05D002765 ORTHO05D003083 2.2e-14 82.8 145 37.9
Gohir.D02G217400 Gossypium hirsutum HOM05D002765 ORTHO05D003083 2.8e-14 82.4 144 38.2
Gorai.005G245400 Gossypium raimondii HOM05D002765 ORTHO05D003083 2.8e-14 82.4 144 38.2
Thecc.02G081400 Theobroma cacao HOM05D002765 ORTHO05D003083 2.8e-14 82.4 148 36.5
Thhalv10024973m.g Eutrema salsugineum HOM05D002765 ORTHO05D003083 3.7e-14 82.0 145 36.6
Peaxi162Scf00684g00236 Petunia axillaris HOM05D002765 ORTHO05D003083 3.7e-14 82.0 145 38.6
Pp3c14_22050 Physcomitrium patens HOM05D002765 ORTHO05D003083 3.7e-14 82.0 148 35.8
AT4G34570 Arabidopsis thaliana HOM05D002765 ORTHO05D003083 4.9e-14 81.6 145 35.9
BcaNung00686 Brassica carinata HOM05D002765 ORTHO05D003083 4.9e-14 81.6 148 38.5
A03p45760 Brassica napus HOM05D002765 ORTHO05D003083 4.9e-14 81.6 148 35.8
C01p04230 Brassica napus HOM05D002765 ORTHO05D003083 4.9e-14 81.6 148 38.5
BolC1t00410H Brassica oleracea HOM05D002765 ORTHO05D003083 4.9e-14 81.6 148 38.5
CARHR242830 Cardamine hirsuta HOM05D002765 ORTHO05D003083 4.9e-14 81.6 145 35.9
AUR62011293 Chenopodium quinoa HOM05D002765 ORTHO05D003083 4.9e-14 81.6 145 35.9
Cc09_g07220 Coffea canephora HOM05D002765 ORTHO05D003083 4.9e-14 81.6 152 37.5
Carub.0007s0572 Capsella rubella HOM05D002765 ORTHO05D003083 6.3e-14 81.3 145 36.6
COL.COLO4_25975 Corchorus olitorius HOM05D002765 ORTHO05D003083 6.3e-14 81.3 145 37.2
Zm00001eb027080 Zea mays HOM05D002765 ORTHO05D003083 6.3e-14 81.3 135 38.5
Zm00001eb112740 Zea mays HOM05D002765 ORTHO05D003083 6.3e-14 81.3 145 37.2
AUR62016765 Chenopodium quinoa HOM05D002765 ORTHO05D003083 8.3e-14 80.9 135 37.8
Eucgr.G01624 Eucalyptus grandis HOM05D002765 ORTHO05D003083 8.3e-14 80.9 145 37.2
Eucgr.A01332 Eucalyptus grandis HOM05D002765 ORTHO05D003083 1.1e-13 80.5 145 37.2
Gohir.A01G004300 Gossypium hirsutum HOM05D002765 ORTHO05D003083 1.1e-13 80.5 145 36.6
AL7G16640 Arabidopsis lyrata HOM05D002765 ORTHO05D003083 1.4e-13 80.1 145 35.9
BraA01t00379Z Brassica rapa HOM05D002765 ORTHO05D003083 1.4e-13 80.1 148 37.8
Ah.05g176920 Amaranthus hybridus HOM05D002765 ORTHO05D003083 1.8e-13 79.7 145 35.9
Nitab4.5_0000308g0320 Nicotiana tabacum HOM05D002765 ORTHO05D003083 1.8e-13 79.7 148 37.8
Nitab4.5_0002169g0060 Nicotiana tabacum HOM05D002765 ORTHO05D003083 1.8e-13 79.7 148 37.8
Os12g0446900 Oryza sativa ssp. japonica HOM05D002765 ORTHO05D003083 1.8e-13 79.7 145 35.9
Sp7g32360 Schrenkiella parvula HOM05D002765 ORTHO05D003083 1.8e-13 79.7 145 35.2
Thhalv10022646m.g Eutrema salsugineum HOM05D002765 ORTHO05D003083 2.4e-13 79.3 145 36.6
MBI10_g00763_MAGBIO Magnolia biondii HOM05D002765 ORTHO05D003083 2.4e-13 79.3 148 35.1
Peaxi162Scf00286g00232 Petunia axillaris HOM05D002765 ORTHO05D003083 2.4e-13 79.3 135 40.0
A01p03920 Brassica napus HOM05D002765 ORTHO05D003083 3.2e-13 79.0 148 37.8
BraA03t13707Z Brassica rapa HOM05D002765 ORTHO05D003083 3.2e-13 79.0 148 35.1
Oeu002822.1 Olea europaea HOM05D002765 ORTHO05D003083 3.2e-13 79.0 145 35.9
EL10Ac9g21698 Beta vulgaris HOM05D002765 ORTHO05D003083 4.1e-13 78.6 145 35.9
A03p62970 Brassica napus HOM05D002765 ORTHO05D003083 4.1e-13 78.6 146 38.4
Manes.11G084400 Manihot esculenta HOM05D002765 ORTHO05D003083 4.1e-13 78.6 145 36.6
CAN.G1058.11 Capsicum annuum HOM05D002765 ORTHO05D003083 5.4e-13 78.2 145 37.2
DCAR_022987 Daucus carota HOM05D002765 ORTHO05D003083 5.4e-13 78.2 145 35.9
Dinv39448 Davidia involucrata HOM05D002765 ORTHO05D003083 5.4e-13 78.2 145 35.2
Potri.004G157400 Populus trichocarpa HOM05D002765 ORTHO05D003083 5.4e-13 78.2 145 36.6
Sabra04G0105200 Salix brachista HOM05D002765 ORTHO05D003083 5.4e-13 78.2 145 36.6
Sc18g0004350 Simmondsia chinensis HOM05D002765 ORTHO05D003083 5.4e-13 78.2 145 35.2
Manes.18G020100 Manihot esculenta HOM05D002765 ORTHO05D003083 7.0e-13 77.8 145 35.2
Sp3g29600 Schrenkiella parvula HOM05D002765 ORTHO05D003083 7.0e-13 77.8 148 35.1
Hund00245 Selenicereus undatus HOM05D002765 ORTHO05D003083 7.0e-13 77.8 148 35.1
TWI31G0187 Tripterygium wilfordii HOM05D002765 ORTHO05D003083 7.0e-13 77.8 145 36.6
GSVIVG01009758001 Vitis vinifera HOM05D002765 ORTHO05D003083 7.0e-13 77.8 135 36.3
ATR0585G086 Amborella trichopoda HOM05D002765 ORTHO05D003083 1.2e-12 77.0 148 34.5
Lj4C789G13 Lonicera japonica HOM05D002765 ORTHO05D003083 1.2e-12 77.0 145 35.9
SEGI_28399 Sequoiadendron giganteum HOM05D002765 ORTHO05D003083 1.2e-12 77.0 145 36.6
BraA03t15371Z Brassica rapa HOM05D002765 ORTHO05D003083 1.6e-12 76.6 145 37.2
Cc10_g02530 Coffea canephora HOM05D002765 ORTHO05D003083 1.6e-12 76.6 145 34.5
Dinv23496 Davidia involucrata HOM05D002765 ORTHO05D003083 1.6e-12 76.6 145 35.9
Manes.04G073700 Manihot esculenta HOM05D002765 ORTHO05D003083 1.6e-12 76.6 145 36.6
Nitab4.5_0014191g0010 Nicotiana tabacum HOM05D002765 ORTHO05D003083 1.6e-12 76.6 143 39.2
TWI79G0568 Tripterygium wilfordii HOM05D002765 ORTHO05D003083 1.6e-12 76.6 145 36.6
Aqoxy6G03012 Aquilegia oxysepala HOM05D002765 ORTHO05D003083 2.0e-12 76.3 142 35.9
Ciclev10002350m.g Citrus clementina HOM05D002765 ORTHO05D003083 2.0e-12 76.3 145 33.8
Sed0015701 Sechium edule HOM05D002765 ORTHO05D003083 2.0e-12 76.3 145 35.9
Cfa013865 Carpinus fangiana HOM05D002765 ORTHO05D003083 2.7e-12 75.9 145 34.5
Haze_02340 Corylus avellana HOM05D002765 ORTHO05D003083 2.7e-12 75.9 145 35.9
Haze_02346 Corylus avellana HOM05D002765 ORTHO05D003083 2.7e-12 75.9 145 35.9
ECA240G4482 Erigeron canadensis HOM05D002765 ORTHO05D003083 2.7e-12 75.9 142 34.5
Potri.005G230400 Populus trichocarpa HOM05D002765 ORTHO05D003083 2.7e-12 75.9 146 34.9
Prupe.8G092500 Prunus persica HOM05D002765 ORTHO05D003083 2.7e-12 75.9 145 33.8
Aa31LG2G15950 Aethionema arabicum HOM05D002765 ORTHO05D003083 3.5e-12 75.5 145 35.2
CBR_g51471 Chara braunii HOM05D002765 ORTHO05D003083 3.5e-12 75.5 139 37.4
Gohir.A05G191700 Gossypium hirsutum HOM05D002765 ORTHO05D003083 3.5e-12 75.5 148 33.8
arahy.Tifrunner.gnm1.ann1.FJUP9F Arachis hypogaea HOM05D002765 ORTHO05D003083 4.5e-12 75.1 145 33.8
arahy.Tifrunner.gnm1.ann1.NI5FH8 Arachis hypogaea HOM05D002765 ORTHO05D003083 4.5e-12 75.1 145 33.8
CiPaw.06G133700 Carya illinoinensis HOM05D002765 ORTHO05D003083 4.5e-12 75.1 135 37.0
Gohir.D05G195000 Gossypium hirsutum HOM05D002765 ORTHO05D003083 4.5e-12 75.1 148 33.8
QL02p009415 Quercus lobata HOM05D002765 ORTHO05D003083 4.5e-12 75.1 145 33.1
Aa31LG8G13720 Aethionema arabicum HOM05D002765 ORTHO05D003083 5.9e-12 74.7 145 33.8
Lj1g0022223 Lotus japonicus HOM05D002765 ORTHO05D003083 5.9e-12 74.7 152 33.6
Potri.009G119200 Populus trichocarpa HOM05D002765 ORTHO05D003083 5.9e-12 74.7 145 35.2
Solyc01g109830.3 Solanum lycopersicum HOM05D002765 ORTHO05D003083 5.9e-12 74.7 145 35.9
CiPaw.05G067600 Carya illinoinensis HOM05D002765 ORTHO05D003083 7.8e-12 74.3 145 34.5
RcHm_v2.0_Chr6g0265641 Rosa chinensis HOM05D002765 ORTHO05D003083 7.8e-12 74.3 145 33.8
Sabra09G0091700 Salix brachista HOM05D002765 ORTHO05D003083 7.8e-12 74.3 145 34.5
PGSC0003DMG400000736 Solanum tuberosum HOM05D002765 ORTHO05D003083 7.8e-12 74.3 145 35.9
arahy.Tifrunner.gnm1.ann1.1CC5AH Arachis hypogaea HOM05D002765 ORTHO05D003083 1.0e-11 73.9 145 33.8
Cfa024717 Carpinus fangiana HOM05D002765 ORTHO05D003083 1.0e-11 73.9 153 35.9
Glyma.04G010800 Glycine max HOM05D002765 ORTHO05D003083 1.0e-11 73.9 145 34.5
Glyma.06G010600 Glycine max HOM05D002765 ORTHO05D003083 1.0e-11 73.9 145 34.5
Gorai.009G199800 Gossypium raimondii HOM05D000394 ORTHO05D000299 1.0e-11 73.9 148 33.8
Sopen01g052030 Solanum pennellii HOM05D002765 ORTHO05D003083 1.0e-11 73.9 145 35.9
Duzib093G1417 Durio zibethinus HOM05D000394 ORTHO05D000299 1.3e-11 73.6 145 33.1
Sabra08G0044200 Salix brachista HOM05D002357 ORTHO05D002676 1.7e-11 73.2 146 34.9
arahy.Tifrunner.gnm1.ann1.P4FFBW Arachis hypogaea HOM05D002765 ORTHO05D003083 2.3e-11 72.8 145 33.1
MD05G1063200 Malus domestica HOM05D002765 ORTHO05D003083 2.9e-11 72.4 145 33.1
Potri.005G230700 Populus trichocarpa HOM05D002765 ORTHO05D003083 2.9e-11 72.4 146 33.6
EL10Ac1g00634 Beta vulgaris HOM05D002765 ORTHO05D003083 3.9e-11 72.0 149 32.2
QL11p044277 Quercus lobata HOM05D002765 ORTHO05D003083 3.9e-11 72.0 145 33.8
SalBow8G2750 Salvia bowleyana HOM05D002765 ORTHO05D003083 3.9e-11 72.0 146 34.2
SalBow8G4623 Salvia bowleyana HOM05D002765 ORTHO05D003083 3.9e-11 72.0 146 34.2
Hund26904 Selenicereus undatus HOM05D002765 ORTHO05D003083 3.9e-11 72.0 146 36.3
MSTRG.24279 Avicennia marina HOM05D002765 ORTHO05D003083 5.0e-11 71.6 145 33.8
AUR62025833 Chenopodium quinoa HOM05D002765 ORTHO05D003083 5.0e-11 71.6 148 33.8
MD10G1070700 Malus domestica HOM05D002765 ORTHO05D003083 5.0e-11 71.6 145 33.1
Sed0012060 Sechium edule HOM05D002765 ORTHO05D003083 5.0e-11 71.6 145 33.1
SMO361G0643 Selaginella moellendorffii HOM05D002765 ORTHO05D003083 8.6e-11 70.9 143 36.4
Eucgr.F01594 Eucalyptus grandis HOM05D002765 ORTHO05D003083 1.1e-10 70.5 148 33.8
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 1.5e-10 70.1 145 34.5
CSS0026357 Camellia sinensis var. sinensis HOM05D002765 ORTHO05D003083 3.3e-10 68.9 135 35.6
EL10Ac1g00637 Beta vulgaris HOM05D002765 ORTHO05D003083 4.3e-10 68.6 140 32.9
Cre17.g715900 Chlamydomonas reinhardtii HOM05D002765 ORTHO05D003083 1.6e-09 66.6 191 31.9
MCO05G726 Micromonas commoda HOM05D002765 ORTHO05D003083 1.6e-09 66.6 150 33.3
AT2G21550 Arabidopsis thaliana HOM05D002765 ORTHO05D003083 4.7e-09 65.1 145 31.7
CARHR112490 Cardamine hirsuta HOM05D002765 ORTHO05D003083 4.7e-09 65.1 145 32.4
Nitab4.5_0000199g0070 Nicotiana tabacum HOM05D002765 ORTHO05D003083 6.1e-09 64.7 112 42.9
Atru.chr13.421 Acer truncatum HOM05D002765 ORTHO05D003083 8.0e-09 64.3 131 35.1
AL4G10740 Arabidopsis lyrata HOM05D002765 ORTHO05D003083 8.0e-09 64.3 145 32.4
Carub.0004s0059 Capsella rubella HOM05D002765 ORTHO05D003083 1.0e-08 63.9 145 31.7
THA.LOC104824813 Tarenaya hassleriana HOM05D002765 ORTHO05D003083 2.3e-08 62.8 145 32.4
Nn3g20068 Nelumbo nucifera HOM05D002765 ORTHO05D003083 3.1e-08 62.4 141 30.5
Aqoxy6G03013 Aquilegia oxysepala HOM05D002765 ORTHO05D003083 4.0e-08 62.0 107 39.3
PRCOL_00000024 Prasinoderma coloniale HOM05D002765 ORTHO05D003083 8.9e-08 60.8 157 32.5
Aqoxy5G01571 Aquilegia oxysepala HOM05D002765 ORTHO05D003083 2.2e-06 56.2 96 38.5
AUR62014147 Chenopodium quinoa HOM05D002765 ORTHO05D003083 4.9e-06 55.1 100 35.0


User provided reference genes

Program Settings