Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28177_v3 Cicer arietinum L. HOM05D001730 ORTHO05D005730 9.7e-107 390.2 201 100.0
Sabra16G0040100 Salix brachista HOM05D001730 ORTHO05D005730 4.6e-32 142.1 79 89.9
Sabra16G0044800 Salix brachista HOM05D001730 ORTHO05D005730 4.6e-32 142.1 79 89.9
Psat6g070960 Pisum sativum HOM05D001730 ORTHO05D005730 7.8e-32 141.4 81 88.9
Potri.016G038200 Populus trichocarpa HOM05D001730 ORTHO05D005730 1.0e-31 141.0 79 88.6
Medtr1g064320 Medicago truncatula HOM05D001730 ORTHO05D005730 1.7e-31 140.2 81 87.7
Glyma.19G132000 Glycine max HOM05D001730 ORTHO05D005730 2.3e-31 139.8 79 88.6
Glyma.03G129700 Glycine max HOM05D001730 ORTHO05D005730 3.0e-31 139.4 79 88.6
Manes.01G122300 Manihot esculenta HOM05D001730 ORTHO05D005730 3.9e-31 139.0 81 86.4
Lj2g0003873 Lotus japonicus HOM05D001730 ORTHO05D005730 6.6e-31 138.3 81 87.7
FAN21G0837 Fragaria x ananassa HOM05D001730 ORTHO05D005730 1.1e-30 137.5 81 85.2
RcHm_v2.0_Chr2g0125281 Rosa chinensis HOM05D001730 ORTHO05D005730 1.1e-30 137.5 81 85.2
VMungo1383G2598 Vigna mungo HOM05D001730 ORTHO05D005730 1.1e-30 137.5 79 87.3
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 1.5e-30 137.1 81 86.4
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 3.3e-30 136.0 79 87.3
SalBow2G1785 Salvia bowleyana HOM05D001730 ORTHO05D005730 3.3e-30 136.0 81 85.2
Atru.chr1.1491 Acer truncatum HOM05D001730 ORTHO05D005730 4.3e-30 135.6 79 86.1
Duzib093G2101 Durio zibethinus HOM05D001730 ORTHO05D005730 4.3e-30 135.6 79 86.1
FAN16G3033 Fragaria x ananassa HOM05D001730 ORTHO05D005730 4.3e-30 135.6 81 84.0
MBI16_g23860_MAGBIO Magnolia biondii HOM05D001730 ORTHO05D005730 4.3e-30 135.6 81 85.2
Peaxi162Scf00970g00166 Petunia axillaris HOM05D001730 ORTHO05D005730 4.3e-30 135.6 81 84.0
Thecc.05G138900 Theobroma cacao HOM05D001730 ORTHO05D005730 4.3e-30 135.6 79 86.1
Gohir.D11G323500 Gossypium hirsutum HOM05D001730 ORTHO05D005730 5.6e-30 135.2 81 85.2
Gorai.007G353500 Gossypium raimondii HOM05D001730 ORTHO05D005730 5.6e-30 135.2 81 85.2
FvH4_3g30150 Fragaria vesca HOM05D001730 ORTHO05D005730 7.3e-30 134.8 81 84.0
FAN11G0160 Fragaria x ananassa HOM05D001730 ORTHO05D005730 7.3e-30 134.8 81 84.0
TAR623G1659 Trochodendron aralioides HOM05D001730 ORTHO05D005730 7.3e-30 134.8 79 86.1
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 9.5e-30 134.4 81 85.2
Ciclev10020055m.g Citrus clementina HOM05D001730 ORTHO05D005730 9.5e-30 134.4 79 84.8
TWI77G0683 Tripterygium wilfordii HOM05D001730 ORTHO05D005730 9.5e-30 134.4 81 86.4
COL.COLO4_05065 Corchorus olitorius HOM05D001730 ORTHO05D005730 1.2e-29 134.0 79 84.8
Cpa.g.sc5.210 Carica papaya HOM05D001730 ORTHO05D005730 1.6e-29 133.7 79 83.5
Os06g0175800 Oryza sativa ssp. japonica HOM05D001730 ORTHO05D005730 1.6e-29 133.7 81 82.7
Os06g0176900 Oryza sativa ssp. japonica HOM05D001730 ORTHO05D005730 1.6e-29 133.7 81 82.7
CAN.G641.73 Capsicum annuum HOM05D001730 ORTHO05D005730 2.1e-29 133.3 81 82.7
Cfa020023 Carpinus fangiana HOM05D001730 ORTHO05D005730 2.1e-29 133.3 79 86.1
AUR62040828 Chenopodium quinoa HOM05D001730 ORTHO05D005730 2.1e-29 133.3 81 82.7
Nn7g36657 Nelumbo nucifera HOM05D001730 ORTHO05D005730 2.1e-29 133.3 79 86.1
Gohir.A11G308100 Gossypium hirsutum HOM05D001730 ORTHO05D005730 3.6e-29 132.5 81 85.2
Hund24627 Selenicereus undatus HOM05D001730 ORTHO05D005730 3.6e-29 132.5 79 82.3
Zm00001eb375190 Zea mays HOM05D001730 ORTHO05D005730 3.6e-29 132.5 81 82.7
HanXRQChr06g0176921 Helianthus annuus HOM05D001730 ORTHO05D005730 4.7e-29 132.1 79 84.8
Lj1A1103T61 Lonicera japonica HOM05D001730 ORTHO05D005730 4.7e-29 132.1 79 84.8
QL07p008834 Quercus lobata HOM05D001730 ORTHO05D005730 4.7e-29 132.1 79 84.8
Sc13g0001250 Simmondsia chinensis HOM05D001730 ORTHO05D005730 4.7e-29 132.1 79 83.5
EL10Ac3g07205 Beta vulgaris HOM05D001730 ORTHO05D005730 6.2e-29 131.7 82 80.5
CSS0010163 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D005730 6.2e-29 131.7 79 83.5
Eucgr.A02261 Eucalyptus grandis HOM05D001730 ORTHO05D005730 6.2e-29 131.7 79 83.5
Nitab4.5_0002162g0100 Nicotiana tabacum HOM05D001730 ORTHO05D005730 6.2e-29 131.7 81 81.5
Nitab4.5_0002208g0110 Nicotiana tabacum HOM05D001730 ORTHO05D005730 6.2e-29 131.7 81 81.5
Phvul.001G125400 Phaseolus vulgaris HOM05D001730 ORTHO05D005730 6.2e-29 131.7 79 84.8
SGA_v2.0_scaffold94G28527 Striga asiatica HOM05D001730 ORTHO05D005730 6.2e-29 131.7 81 81.5
Aqoxy2G00352 Aquilegia oxysepala HOM05D001730 ORTHO05D005730 8.1e-29 131.3 81 81.5
QL07p008853 Quercus lobata HOM05D001730 ORTHO05D005730 8.1e-29 131.3 79 81.0
Migut.J01673 Erythranthe guttata HOM05D001730 ORTHO05D005730 1.1e-28 131.0 81 80.2
Peaxi162Scf00420g00564 Petunia axillaris HOM05D001730 ORTHO05D005730 1.1e-28 131.0 81 81.5
PGR044G2076 Punica granatum HOM05D001730 ORTHO05D005730 1.1e-28 131.0 79 83.5
MD12G1093700 Malus domestica HOM05D001730 ORTHO05D005730 1.4e-28 130.6 81 82.7
GSVIVG01033607001 Vitis vinifera HOM05D001730 ORTHO05D005730 1.4e-28 130.6 79 83.5
AUR62030340 Chenopodium quinoa HOM05D001730 ORTHO05D005730 1.8e-28 130.2 80 82.5
Dinv34377 Davidia involucrata HOM05D001730 ORTHO05D005730 1.8e-28 130.2 79 84.8
Lalb_Chr20g0110151 Lupinus albus HOM05D001730 ORTHO05D005730 1.8e-28 130.2 79 81.0
Nitab4.5_0000571g0120 Nicotiana tabacum HOM05D001730 ORTHO05D005730 1.8e-28 130.2 81 80.2
Nitab4.5_0001364g0030 Nicotiana tabacum HOM05D001730 ORTHO05D005730 1.8e-28 130.2 81 80.2
PSO063G6072 Papaver somniferum HOM05D001730 ORTHO05D005730 1.8e-28 130.2 81 81.5
RhsimUnG0220800 Rhododendron simsii HOM05D001730 ORTHO05D005730 1.8e-28 130.2 79 81.0
DCAR_013636 Daucus carota HOM05D001730 ORTHO05D005730 2.4e-28 129.8 79 81.0
PSO063G4026 Papaver somniferum HOM05D001730 ORTHO05D005730 2.4e-28 129.8 81 81.5
PGR031G1759 Punica granatum HOM05D001730 ORTHO05D005730 2.4e-28 129.8 79 82.3
CiPaw.09G046100 Carya illinoinensis HOM05D001730 ORTHO05D005730 3.1e-28 129.4 79 84.8
ECA236G4630 Erigeron canadensis HOM05D001730 ORTHO05D005730 3.1e-28 129.4 79 82.3
Nn2g14860 Nelumbo nucifera HOM05D001730 ORTHO05D005730 3.1e-28 129.4 79 83.5
Peaxi162Scf01378g00122 Petunia axillaris HOM05D001730 ORTHO05D005730 3.1e-28 129.4 83 79.5
Rhsim03G0042000 Rhododendron simsii HOM05D001730 ORTHO05D005730 3.1e-28 129.4 79 81.0
Solyc10g079720.2 Solanum lycopersicum HOM05D001730 ORTHO05D005730 3.1e-28 129.4 81 80.2
Migut.K00129 Erythranthe guttata HOM05D001730 ORTHO05D005730 4.0e-28 129.0 81 81.5
Manes.09G007000 Manihot esculenta HOM05D001730 ORTHO05D005730 6.8e-28 128.3 79 82.3
MELO3C026534.2 Cucumis melo HOM05D001730 ORTHO05D005730 8.9e-28 127.9 79 82.3
CsaV3_6G031510 Cucumis sativus L. HOM05D001730 ORTHO05D005730 8.9e-28 127.9 79 82.3
Dinv05063 Davidia involucrata HOM05D001730 ORTHO05D005730 8.9e-28 127.9 81 80.2
Sopen10g030350 Solanum pennellii HOM05D001730 ORTHO05D005730 8.9e-28 127.9 81 80.2
Lsat_1_v5_gn_8_82641 Lactuca sativa HOM05D001730 ORTHO05D005730 1.2e-27 127.5 79 81.0
Lalb_Chr25g0286861 Lupinus albus HOM05D001730 ORTHO05D005730 1.2e-27 127.5 79 83.5
Cc06_g18900 Coffea canephora HOM05D001730 ORTHO05D005730 2.0e-27 126.7 81 77.8
Oeu063773.2 Olea europaea HOM05D001730 ORTHO05D005730 2.6e-27 126.3 81 79.0
HPP92_013743 Vanilla planifolia HOM05D001730 ORTHO05D005730 2.6e-27 126.3 81 79.0
Rhsim03G0041800 Rhododendron simsii HOM05D001730 ORTHO05D005730 3.4e-27 125.9 72 84.7
PGSC0003DMG400029836 Solanum tuberosum HOM05D001730 ORTHO05D005730 5.8e-27 125.2 81 79.0
ClCG08G009380 Citrullus lanatus HOM05D001730 ORTHO05D005730 7.6e-27 124.8 79 79.7
Mapoly0005s0149 Marchantia polymorpha HOM05D001730 ORTHO05D005730 7.6e-27 124.8 81 79.0
ATR1134G130 Amborella trichopoda HOM05D001730 ORTHO05D005730 9.9e-27 124.4 81 77.8
PSO017G5717 Papaver somniferum HOM05D001730 ORTHO05D005730 9.9e-27 124.4 79 79.7
PSO832G4537 Papaver somniferum HOM05D001730 ORTHO05D005730 1.7e-26 123.6 81 79.0
THA.LOC104824410 Tarenaya hassleriana HOM05D001730 ORTHO05D005730 1.7e-26 123.6 79 75.9
HanXRQChr01g0009311 Helianthus annuus HOM05D001730 ORTHO05D005730 2.2e-26 123.2 81 77.8
Sed0022611 Sechium edule HOM05D001730 ORTHO05D005730 2.9e-26 122.9 79 81.0
CANSAT64G2870 Cannabis sativa HOM05D001730 ORTHO05D005730 6.4e-26 121.7 81 77.8
Carub.0005s2385 Capsella rubella HOM05D001730 ORTHO05D005730 8.4e-26 121.3 79 75.9
PSO170G6374 Papaver somniferum HOM05D001730 ORTHO05D005730 8.4e-26 121.3 79 78.5
ECA248G3688 Erigeron canadensis HOM05D001730 ORTHO05D005730 1.1e-25 120.9 79 77.2
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 1.9e-25 120.2 72 84.7
CDE06G0603 Ceratophyllum demersum HOM05D001730 ORTHO05D005730 2.4e-25 119.8 81 76.5
AL5G38530 Arabidopsis lyrata HOM05D001730 ORTHO05D005730 9.2e-25 117.9 79 73.4
AT3G57050 Arabidopsis thaliana HOM05D001730 ORTHO05D005730 9.2e-25 117.9 79 73.4
BcaB02g07623 Brassica carinata HOM05D001730 ORTHO05D005730 9.2e-25 117.9 79 73.4
A09p49970 Brassica napus HOM05D001730 ORTHO05D005730 9.2e-25 117.9 79 73.4
C08p32380 Brassica napus HOM05D001730 ORTHO05D005730 9.2e-25 117.9 79 73.4
BolC8t50852H Brassica oleracea HOM05D001730 ORTHO05D005730 9.2e-25 117.9 79 73.4
BraA09t40447Z Brassica rapa HOM05D001730 ORTHO05D005730 9.2e-25 117.9 79 73.4
Sp5g05530 Schrenkiella parvula HOM05D001730 ORTHO05D005730 9.2e-25 117.9 79 73.4
SEGI_02944 Sequoiadendron giganteum HOM05D001730 ORTHO05D005730 9.2e-25 117.9 81 71.6
BcaB02g08332 Brassica carinata HOM05D001730 ORTHO05D005730 2.1e-24 116.7 79 72.2
BcaC02g09899 Brassica carinata HOM05D001730 ORTHO05D005730 2.1e-24 116.7 79 72.2
A04p03780 Brassica napus HOM05D001730 ORTHO05D005730 2.1e-24 116.7 79 72.2
C04p35400 Brassica napus HOM05D001730 ORTHO05D005730 2.1e-24 116.7 79 72.2
BraA04t16056Z Brassica rapa HOM05D001730 ORTHO05D005730 2.1e-24 116.7 79 72.2
DCAR_020551 Daucus carota HOM05D001730 ORTHO05D005730 2.1e-24 116.7 79 73.4
Thhalv10005955m.g Eutrema salsugineum HOM05D001730 ORTHO05D005730 2.1e-24 116.7 79 73.4
BcaC07g40051 Brassica carinata HOM05D001730 ORTHO05D005730 2.7e-24 116.3 79 72.2
CARHR167240 Cardamine hirsuta HOM05D001730 ORTHO05D005730 4.6e-24 115.5 79 72.2
Aa31LG10G11970 Aethionema arabicum HOM05D001730 ORTHO05D005730 1.3e-23 114.0 79 72.2
Pp3c5_1990 Physcomitrium patens HOM05D001730 ORTHO05D005730 6.6e-23 111.7 81 70.4
RhsimUnG0239200 Rhododendron simsii HOM05D001730 ORTHO05D005730 1.9e-22 110.2 93 63.4
SMO358G0226 Selaginella moellendorffii HOM05D001730 ORTHO05D005730 7.3e-22 108.2 81 66.7
CBR_g45651 Chara braunii HOM05D001730 ORTHO05D005730 1.2e-21 107.5 81 67.9
PRCOL_00006688 Prasinoderma coloniale HOM05D001730 ORTHO05D005730 1.4e-17 94.0 81 60.5
BcaC07g40082 Brassica carinata HOM05D001730 ORTHO05D005730 4.6e-16 89.0 75 61.3
MCO10G385 Micromonas commoda HOM05D001730 ORTHO05D005730 6.0e-16 88.6 81 56.8
CBR_g53946 Chara braunii HOM05D001730 ORTHO05D005730 1.3e-15 87.4 80 56.2
Cre16.g669550 Chlamydomonas reinhardtii HOM05D001730 ORTHO05D005730 1.3e-15 87.4 79 58.2
CBR_g175 Chara braunii HOM05D001730 ORTHO05D005730 1.7e-15 87.0 80 56.2
CBR_g178 Chara braunii HOM05D001730 ORTHO05D005730 1.7e-15 87.0 80 56.2
CBR_g179 Chara braunii HOM05D001730 ORTHO05D005730 1.7e-15 87.0 80 56.2
CBR_g168 Chara braunii HOM05D001730 ORTHO05D005730 3.9e-15 85.9 80 55.0
CBR_g34755 Chara braunii HOM05D001730 ORTHO05D005730 5.1e-15 85.5 80 55.0
CBR_g169 Chara braunii HOM05D001730 ORTHO05D005730 4.3e-14 82.4 80 55.0
Ca_18145_v3 Cicer arietinum L. HOM05D012096 ORTHO05D149159 3.6e-13 79.3 46 84.8
Ca_23178_v3 Cicer arietinum L. HOM05D006655 ORTHO05D007986 5.8e-11 72.0 38 94.7
Ca_11385_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 7.6e-11 71.6 44 88.6
Cfa024823 Carpinus fangiana HOM05D001730 ORTHO05D005730 9.9e-11 71.2 79 49.4
Ca_18547_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 1.3e-10 70.9 38 92.1
SalBow2G0687 Salvia bowleyana HOM05D001730 ORTHO05D021573 3.8e-10 69.3 46 78.3
Ca_16498_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 4.9e-10 68.9 38 92.1
Ca_14517_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 1.9e-09 67.0 39 87.2
PGSC0003DMG400035945 Solanum tuberosum HOM05D001730 ORTHO05D005730 1.9e-09 67.0 41 75.6
AagrBONN_evm.TU.Sc2ySwM_368.1488 Anthoceros agrestis HOM05D001730 ORTHO05D005730 4.2e-09 65.9 38 76.3
Prupe.7G042400 Prunus persica HOM05D001730 ORTHO05D005730 1.2e-08 64.3 38 78.9
Ca_26838_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 2.1e-08 63.5 39 82.1
Ca_05182_v3 Cicer arietinum L. HOM05D012018 ORTHO05D013664 2.7e-08 63.2 34 91.2
Ca_00704_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 6.0e-08 62.0 39 79.5
Rhsim03G0042100 Rhododendron simsii HOM05D001730 ORTHO05D021573 1.0e-07 61.2 48 62.5
Ca_01680_v3 Cicer arietinum L. HOM05D012096 ORTHO05D006040 3.0e-07 59.7 60 56.7
BolC4t25094H Brassica oleracea HOM05D001730 ORTHO05D005730 6.7e-07 58.5 38 68.4
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.7e-07 58.5 48 68.8
Ca_31279_v3 Cicer arietinum L. HOM05D012096 ORTHO05D007986 2.5e-06 56.6 46 69.6
CAN.G415.2 Capsicum annuum HOM05D000121 ORTHO05D000102 3.3e-06 56.2 47 66.0
Ca_00169_v3 Cicer arietinum L. HOM05D012096 ORTHO05D006040 5.6e-06 55.5 38 73.7
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 9.6e-06 54.7 38 73.7
PGR004G0017 Punica granatum HOM05D001730 ORTHO05D004519 9.6e-06 54.7 80 41.2


User provided reference genes

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