Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 6.8e-113 410.6 197 100.0
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.9e-87 325.5 197 81.2
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.5e-83 313.2 156 94.9
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 4.4e-80 301.6 208 73.1
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.3e-79 300.1 208 72.1
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.3e-79 300.1 208 72.1
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.4e-78 294.7 197 72.6
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.2e-77 293.5 197 72.6
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-76 290.0 197 70.6
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 5.1e-76 288.1 209 67.9
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.9e-75 286.2 202 70.8
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 2.8e-74 282.3 196 69.4
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.4e-73 280.0 209 67.0
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.2e-72 276.9 196 68.9
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 1.3e-71 273.5 196 68.4
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 3.8e-71 271.9 193 72.0
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.1e-70 270.4 191 68.1
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 1.4e-70 270.0 196 68.4
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 2.7e-69 265.8 196 65.3
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.7e-69 265.8 196 65.3
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.3e-68 263.5 196 66.3
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 2.3e-68 262.7 201 66.2
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 3.9e-68 261.9 205 62.4
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 5.1e-68 261.5 201 65.7
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 6.6e-68 261.2 196 67.9
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.5e-67 260.0 196 63.3
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.9e-67 259.6 196 64.8
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.5e-67 259.2 201 64.7
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.3e-67 258.8 196 63.8
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 4.3e-67 258.5 201 64.2
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 7.3e-67 257.7 201 64.2
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 2.1e-66 256.1 197 64.5
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 2.1e-66 256.1 196 65.3
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 6.2e-66 254.6 196 63.3
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.4e-65 253.4 239 55.2
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.4e-65 253.4 196 63.3
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.1e-65 252.3 196 60.2
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 3.1e-65 252.3 196 62.2
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 4.0e-65 251.9 196 64.8
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.2e-64 250.4 196 63.3
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 2.0e-64 249.6 204 59.8
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 2.0e-64 249.6 196 58.7
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 7.6e-64 247.7 196 60.7
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 9.9e-64 247.3 212 58.0
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 1.7e-63 246.5 200 61.5
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 2.9e-63 245.7 197 65.0
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 2.9e-63 245.7 236 55.1
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 3.8e-63 245.4 206 58.7
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 6.4e-63 244.6 200 61.0
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.1e-62 243.8 230 56.5
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.1e-62 243.8 230 56.5
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 4.2e-62 241.9 212 57.1
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.2e-62 241.9 197 64.5
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 9.3e-62 240.7 202 58.9
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.2e-61 240.4 196 57.1
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 2.7e-61 239.2 196 56.1
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 4.6e-61 238.4 196 60.2
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 1.0e-60 237.3 212 57.5
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 1.0e-60 237.3 196 60.2
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-60 236.9 196 59.2
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.3e-60 236.9 196 61.2
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.9e-60 235.3 196 58.7
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 5.1e-60 235.0 196 58.7
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 5.1e-60 235.0 186 62.9
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 2.5e-59 232.6 198 55.1
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 3.3e-59 232.3 196 54.6
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 3.3e-59 232.3 243 53.1
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 5.6e-59 231.5 197 60.4
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 5.6e-59 231.5 196 58.7
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.6e-58 229.9 212 57.1
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 3.6e-58 228.8 204 57.4
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 4.8e-58 228.4 196 54.6
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-57 226.5 216 57.4
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 4.0e-57 225.3 181 60.8
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 5.8e-56 221.5 198 53.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 1.3e-55 220.3 225 51.6
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 1.7e-55 219.9 196 51.5
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.7e-55 219.9 190 60.0
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 4.9e-55 218.4 196 51.0
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 8.4e-55 217.6 195 61.0
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.1e-54 217.2 181 63.5
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.1e-54 217.2 197 54.3
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.1e-54 217.2 197 52.3
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.4e-54 216.9 196 51.5
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-54 216.1 196 51.5
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-54 216.1 196 51.5
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.4e-54 216.1 196 51.5
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 3.2e-54 215.7 202 50.5
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 3.2e-54 215.7 188 59.0
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 5.4e-54 214.9 171 59.6
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.2e-53 213.8 181 60.2
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.7e-53 212.6 196 52.0
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.6e-53 211.8 196 51.5
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 3.9e-52 208.8 181 53.0
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 8.7e-52 207.6 197 49.7
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 2.5e-51 206.1 196 53.1
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 4.3e-51 205.3 197 48.7
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 3.7e-50 202.2 196 54.1
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.4e-49 200.3 196 51.5
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.8e-49 199.9 196 49.5
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 2.4e-49 199.5 181 56.9
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.5e-48 196.8 226 43.4
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 2.0e-48 196.4 197 47.2
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 4.5e-48 195.3 262 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 3.2e-46 189.1 196 42.3
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 6.0e-45 184.9 174 54.6
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 5.7e-43 178.3 132 69.7
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.4e-41 173.7 166 55.4
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 4.5e-40 168.7 123 61.8
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 2.9e-39 166.0 208 41.3
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.9e-39 166.0 197 44.7
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 1.1e-35 154.1 104 75.0
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 1.3e-34 150.6 96 79.2
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.6e-34 150.2 136 58.1
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.4e-33 146.4 196 42.3
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.0e-33 144.4 144 56.2
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 5.9e-32 141.7 208 35.6
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.3e-31 140.6 129 51.9
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 8.5e-31 137.9 124 50.8
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 5.5e-30 135.2 98 61.2
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 3.6e-29 132.5 202 38.1
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 7.9e-29 131.3 114 58.8
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.4e-28 130.6 101 68.3
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 8.8e-28 127.9 98 64.3
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 2.2e-26 123.2 136 50.7
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 8.2e-26 121.3 98 60.2
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.0e-23 114.4 98 61.2
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 2.2e-23 113.2 84 64.3
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 5.5e-22 108.6 68 77.9
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.2e-21 107.5 70 74.3
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.6e-21 107.1 104 47.1
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 4.7e-21 105.5 106 54.7
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.7e-19 98.6 71 63.4
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.2e-18 94.7 100 54.0
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 7.0e-17 91.7 63 69.8
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 9.1e-17 91.3 106 46.2
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.9e-16 88.6 75 62.7
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.2e-15 86.7 47 80.9
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 1.5e-14 84.0 68 57.4
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 4.2e-14 82.4 64 56.2
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.1e-13 80.1 70 52.9
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 1.5e-11 73.9 107 43.9
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 4.8e-10 68.9 156 30.1
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 1.8e-09 67.0 43 67.4
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.1e-09 64.7 55 54.5
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 1.6e-08 63.9 38 71.1
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 4.5e-08 62.4 75 42.7
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 7.7e-08 61.6 44 52.3
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 1.3e-07 60.8 54 46.3
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-07 60.8 51 54.9
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 5.5e-06 55.5 84 35.7


User provided reference genes

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