Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.2e-203 713.0 370 100.0
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.4e-188 662.9 370 92.7
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.9e-188 662.5 370 92.4
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 3.0e-186 655.2 370 91.4
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 9.9e-174 613.6 346 91.3
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.7e-173 612.8 346 91.6
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 7.3e-169 597.4 349 89.4
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 3.1e-167 592.0 371 84.1
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.2e-166 590.1 355 87.3
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 9.9e-166 587.0 375 83.7
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 8.4e-165 583.9 345 88.4
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 2.4e-164 582.4 378 82.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 3.9e-162 575.1 360 84.4
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.5e-161 572.4 339 86.4
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.5e-161 572.4 364 80.8
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.3e-161 572.0 350 84.3
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 5.6e-161 571.2 325 87.7
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.6e-160 568.5 364 80.2
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 8.1e-160 567.4 340 85.9
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 1.1e-159 567.0 323 87.3
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 4.0e-159 565.1 325 87.7
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 5.3e-159 564.7 375 79.5
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 2.0e-158 562.8 325 87.1
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 5.8e-158 561.2 327 86.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.3e-157 560.1 370 79.7
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.3e-157 560.1 373 79.4
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.7e-157 559.7 324 86.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.2e-157 559.3 364 80.8
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 4.9e-157 558.1 326 87.1
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 8.4e-157 557.4 323 86.1
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.1e-156 557.0 325 86.8
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.4e-156 556.6 324 87.3
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.9e-156 556.2 325 86.8
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 3.2e-156 555.4 341 83.6
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.2e-156 555.1 325 86.5
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 4.2e-156 555.1 354 81.9
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.4e-156 554.7 325 86.5
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.4e-156 554.7 324 84.9
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 7.1e-156 554.3 366 80.9
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 7.1e-156 554.3 366 78.4
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 9.3e-156 553.9 326 86.5
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 2.1e-155 552.7 326 86.2
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.7e-155 552.4 326 85.3
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 6.0e-155 551.2 322 86.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 7.9e-155 550.8 357 81.0
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.3e-154 550.1 327 85.9
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.3e-154 549.3 326 85.0
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.1e-154 548.1 350 80.9
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.1e-154 548.1 350 80.9
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.5e-153 546.6 326 84.7
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.9e-153 546.2 369 77.0
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.5e-153 545.8 349 80.5
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 9.6e-153 543.9 345 81.4
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.3e-152 543.5 326 84.4
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.3e-152 543.5 349 82.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.8e-152 542.3 326 84.0
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 3.7e-152 542.0 326 83.7
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.7e-152 542.0 332 84.3
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 3.7e-152 542.0 326 84.0
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 4.8e-152 541.6 392 74.2
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.4e-151 540.0 326 83.1
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.4e-151 540.0 362 77.9
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.8e-151 539.7 324 83.6
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.8e-151 539.7 358 79.9
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.8e-151 539.7 325 84.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.4e-151 539.3 354 79.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 3.1e-151 538.9 327 83.2
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 3.1e-151 538.9 375 76.0
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 4.0e-151 538.5 364 77.5
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 6.9e-151 537.7 353 79.6
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 9.0e-151 537.3 327 82.9
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 9.0e-151 537.3 325 83.1
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-150 537.0 349 79.7
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.5e-150 536.6 442 66.7
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.5e-150 536.6 324 83.3
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.0e-150 536.2 363 77.7
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.6e-150 535.8 364 77.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 3.4e-150 535.4 356 77.5
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 3.4e-150 535.4 337 81.3
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 3.4e-150 535.4 325 84.3
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.5e-150 535.0 352 80.4
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 5.8e-150 534.6 355 78.0
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.6e-150 534.3 346 80.9
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.0e-149 533.9 364 77.2
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.0e-149 533.9 356 77.5
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.0e-149 533.9 327 82.9
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.3e-149 533.5 352 78.7
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.3e-149 533.5 432 67.1
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.7e-149 533.1 369 76.4
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.7e-149 533.1 365 76.7
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.2e-149 532.7 325 82.8
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 2.2e-149 532.7 327 82.3
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.2e-149 532.7 370 77.3
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.8e-149 531.9 366 76.2
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.8e-149 531.9 365 75.9
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.8e-149 531.9 365 75.9
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.9e-149 531.6 363 77.1
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 8.4e-149 530.8 380 73.9
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 8.4e-149 530.8 380 73.9
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-148 530.4 366 76.0
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.1e-148 530.4 366 76.0
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.4e-148 530.0 362 76.5
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.9e-148 529.6 359 77.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.9e-148 529.6 380 73.7
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.2e-148 528.9 362 76.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.2e-148 528.9 318 83.0
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 5.5e-148 528.1 321 84.1
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 7.1e-148 527.7 366 76.0
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 9.3e-148 527.3 366 75.7
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 9.3e-148 527.3 366 75.7
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 4.6e-147 525.0 343 78.4
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 6.0e-147 524.6 369 76.4
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.0e-146 523.9 344 77.6
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.3e-146 522.7 380 73.9
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 8.7e-146 520.8 349 76.5
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.5e-145 520.0 415 68.4
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.9e-145 519.6 332 80.4
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.9e-145 519.6 351 76.4
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 3.3e-145 518.8 323 81.7
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.4e-145 517.7 365 75.1
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.4e-145 517.7 365 75.1
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-144 516.5 300 85.0
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.6e-144 516.5 351 76.1
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.8e-144 515.8 356 77.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 6.2e-144 514.6 324 81.2
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 6.2e-144 514.6 369 73.4
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 9.0e-143 510.8 353 74.8
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.6e-142 507.7 287 89.2
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.3e-141 506.9 372 73.1
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.9e-140 503.1 372 72.6
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.9e-140 503.1 287 87.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.9e-138 495.4 324 77.8
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.5e-137 492.7 328 75.6
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.6e-136 490.0 325 77.8
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.7e-136 488.8 326 75.2
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-135 486.5 380 69.5
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 4.1e-135 485.3 326 79.1
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.2e-134 483.8 364 71.7
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.2e-133 479.6 324 75.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.2e-132 475.7 312 77.2
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.2e-132 475.3 312 77.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 6.1e-131 471.5 326 73.6
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.8e-130 469.9 301 77.4
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 9.7e-129 464.2 329 72.0
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.3e-128 463.8 322 72.7
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 4.1e-127 458.8 299 76.3
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.9e-127 458.0 330 75.2
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.6e-113 412.9 317 66.9
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 2.9e-109 399.4 250 81.6
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.6e-107 393.7 314 64.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 8.8e-106 387.9 246 82.9
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 4.4e-105 385.6 311 70.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.0e-102 376.7 269 77.0
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.5e-97 360.5 290 64.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 5.7e-89 332.0 230 74.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.2e-73 281.2 200 78.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.9e-71 273.9 309 52.8
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 5.1e-69 265.8 189 76.2
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.4e-63 246.9 371 44.7
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 4.8e-51 206.1 112 87.5
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 9.0e-50 201.8 113 90.3
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 9.0e-42 175.3 172 61.0
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 9.0e-42 175.3 172 61.0
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 9.0e-42 175.3 172 61.0
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 8.1e-35 152.1 104 72.1
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 5.3e-34 149.4 102 73.5
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 5.3e-34 149.4 102 73.5
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.4e-33 146.7 102 72.5
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 7.6e-33 145.6 98 73.5
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.9e-32 143.7 106 68.9
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 4.2e-31 139.8 286 33.6
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 9.3e-31 138.7 107 64.5
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.3e-29 134.8 106 64.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 2.8e-19 100.5 64 75.0
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 4.8e-19 99.8 67 80.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.3e-16 91.7 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.1e-15 88.6 61 78.7
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 3.4e-09 67.0 38 78.9
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 3.8e-08 63.5 38 76.3


User provided reference genes

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