Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.1e-240 836.3 415 100.0
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.5e-215 752.7 415 90.1
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 5.8e-215 750.7 416 90.1
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 1.4e-208 729.6 419 87.8
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.3e-198 696.4 419 83.5
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.7e-198 696.0 421 83.4
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 2.3e-195 685.6 419 82.8
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 5.7e-194 681.0 422 80.8
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 2.0e-191 672.5 409 82.9
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 5.1e-187 657.9 461 74.6
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.1e-186 656.8 417 80.1
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 9.7e-186 653.7 461 74.4
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 7.7e-183 644.0 434 77.2
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 1.1e-181 640.2 373 84.5
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.4e-181 639.8 427 78.2
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 2.5e-181 639.0 372 84.7
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 3.2e-181 638.6 429 76.5
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 1.6e-180 636.3 403 79.4
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 4.6e-180 634.8 417 77.7
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 4.6e-180 634.8 436 75.9
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 6.1e-180 634.4 403 79.4
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 7.9e-180 634.0 394 79.2
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 7.9e-180 634.0 436 75.7
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 7.9e-180 634.0 424 75.9
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.0e-179 633.6 381 81.9
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.4e-179 633.3 379 82.8
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.4e-179 633.3 424 75.9
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.4e-179 633.3 384 81.5
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.8e-179 632.9 378 82.5
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.8e-179 632.9 432 77.1
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 3.0e-179 632.1 379 82.6
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 3.9e-179 631.7 375 83.2
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 6.7e-179 630.9 381 81.1
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 4.3e-178 628.2 375 82.7
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.7e-177 626.3 378 83.1
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.8e-176 622.9 376 80.3
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.8e-176 622.9 376 80.3
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.8e-176 622.9 376 80.3
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 1.8e-176 622.9 416 76.2
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.8e-176 622.9 418 76.3
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 5.3e-176 621.3 376 80.1
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 9.1e-176 620.5 439 72.0
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.5e-175 619.8 375 79.7
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 2.6e-175 619.0 379 80.2
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 3.4e-175 618.6 375 80.8
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 7.7e-175 617.5 378 80.4
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.3e-174 616.7 381 80.6
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.7e-174 616.3 394 79.2
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 2.2e-174 615.9 373 79.9
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 2.2e-174 615.9 411 74.7
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 2.9e-174 615.5 421 76.0
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 5.0e-174 614.8 422 75.1
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 5.0e-174 614.8 409 75.1
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 6.5e-174 614.4 370 80.8
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 8.5e-174 614.0 437 73.2
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.4e-173 613.2 438 72.6
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 2.5e-173 612.5 397 77.1
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 2.7e-172 609.0 455 70.1
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 6.1e-172 607.8 409 74.3
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 2.3e-171 605.9 408 77.7
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 3.0e-171 605.5 402 76.9
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 3.0e-171 605.5 396 77.3
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 8.8e-171 604.0 453 70.2
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.1e-170 603.6 429 73.4
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.3e-169 600.1 423 73.0
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 2.2e-169 599.4 402 77.6
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.1e-168 597.0 406 76.4
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 3.1e-168 595.5 428 72.9
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 4.1e-168 595.1 398 76.9
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 5.3e-168 594.7 379 77.8
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.2e-167 593.6 377 76.7
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 6.5e-166 587.8 423 72.8
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 8.5e-166 587.4 429 71.8
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.9e-165 586.3 375 78.1
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 1.2e-164 583.6 380 75.5
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 2.7e-164 582.4 379 76.5
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 3.6e-164 582.0 365 78.6
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.8e-163 579.7 384 76.6
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 2.3e-163 579.3 377 75.9
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 5.2e-163 578.2 374 77.8
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.5e-162 576.6 429 72.3
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 2.0e-162 576.2 430 71.6
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 2.0e-162 576.2 379 76.3
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 2.0e-162 576.2 388 74.0
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 2.6e-162 575.9 351 81.2
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 3.3e-162 575.5 379 74.9
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 4.4e-162 575.1 392 74.7
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.5e-162 574.3 376 75.8
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 9.7e-162 573.9 373 76.7
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 3.7e-161 572.0 430 69.8
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 3.7e-161 572.0 379 76.8
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 7.0e-160 567.8 359 78.0
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.6e-159 566.6 376 76.1
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.0e-158 563.9 349 78.8
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.0e-158 563.9 349 78.8
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.3e-158 563.5 415 70.8
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 7.2e-157 557.8 416 70.4
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 5.2e-155 551.6 374 71.4
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 7.0e-152 541.2 397 71.8
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 1.6e-151 540.0 516 58.1
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.0e-150 537.3 384 72.9
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 8.0e-148 527.7 418 63.6
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.8e-144 516.5 378 69.0
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.2e-143 513.8 544 54.2
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.9e-141 506.5 591 51.3
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 3.3e-141 505.8 425 64.9
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.2e-140 503.8 390 66.7
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.4e-131 473.8 507 53.5
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 6.8e-115 418.3 396 53.8
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.0e-114 416.8 457 54.9
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 5.8e-114 415.2 350 62.0
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.6e-108 396.0 231 82.7
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 8.1e-108 394.8 399 51.4
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 3.4e-106 389.4 225 85.8
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 6.0e-103 378.6 398 52.5
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 2.6e-74 283.5 324 46.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.5e-58 231.1 344 37.8
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 7.7e-58 228.8 122 86.9
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 3.9e-54 216.5 136 78.7
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 2.3e-46 190.7 203 54.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 4.1e-43 179.9 111 79.3
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 2.7e-39 167.2 233 47.2
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 3.8e-33 146.7 103 68.0
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 2.3e-30 137.5 64 96.9
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.1e-27 128.6 75 84.0
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.0e-26 124.4 99 65.7
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 2.3e-25 120.9 83 72.3
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 8.0e-23 112.5 80 68.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.1e-19 102.1 53 86.8
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.1e-14 85.5 40 97.5
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.2e-13 82.0 61 68.9
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.4e-13 80.1 45 84.4
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 4.6e-10 70.1 70 57.1
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.3e-09 68.6 38 76.3
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.2e-07 62.0 62 50.0
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 6.2e-07 59.7 41 68.3


User provided reference genes

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