Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 0.0e+00 1907.1 956 100.0
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 0.0e+00 1596.3 964 84.9
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 0.0e+00 1585.5 966 84.0
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 0.0e+00 1545.0 1006 79.2
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 0.0e+00 1428.3 968 75.6
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 0.0e+00 1413.3 969 74.7
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 0.0e+00 1403.3 970 74.6
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 0.0e+00 1388.2 968 74.4
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 0.0e+00 1288.1 957 70.2
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 0.0e+00 1287.7 965 69.6
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 0.0e+00 1265.8 969 70.2
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 0.0e+00 1246.9 972 68.8
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 0.0e+00 1188.7 892 70.3
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.6e-305 1052.7 969 59.0
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 1.8e-304 1049.3 969 58.5
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 8.8e-299 1030.4 980 56.9
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 4.1e-296 1021.5 967 56.8
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.2e-295 1020.0 974 57.2
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 2.2e-294 1015.8 974 57.0
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 3.2e-293 1011.9 958 57.5
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 4.2e-293 1011.5 968 57.0
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 3.0e-291 1005.4 968 57.3
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 4.4e-290 1001.5 963 56.0
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 2.2e-289 999.2 961 56.3
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.4e-288 996.5 992 56.0
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 7.0e-288 994.2 962 56.1
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 1.2e-287 993.4 952 57.4
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.5e-287 993.0 981 55.2
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.5e-287 993.0 956 55.5
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 4.4e-282 974.9 974 54.8
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 6.3e-281 971.1 987 54.7
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.1e-280 968.8 986 54.7
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 3.1e-280 968.8 962 56.2
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.6e-279 966.5 960 54.0
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 2.0e-279 966.1 943 56.7
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 2.6e-279 965.7 976 54.6
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.5e-279 964.9 987 54.4
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 4.8e-273 944.9 956 53.7
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.6e-271 939.9 1033 52.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 4.0e-267 925.2 963 52.1
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 4.0e-267 925.2 976 53.2
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 6.3e-265 917.9 975 52.6
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 2.4e-264 916.0 963 52.6
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 5.4e-264 914.8 963 52.3
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 2.0e-263 912.9 959 52.5
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 3.5e-263 912.1 967 53.1
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 4.5e-263 911.8 966 52.3
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 7.7e-263 911.0 963 52.3
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 3.8e-262 908.7 980 51.8
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.3e-261 905.6 967 51.9
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.2e-260 903.7 972 51.7
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 3.6e-260 902.1 965 51.8
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 6.1e-260 901.4 978 51.5
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 2.6e-258 896.0 966 51.6
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 9.8e-258 894.0 955 52.1
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 9.2e-256 887.5 962 52.2
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 2.7e-255 885.9 944 51.7
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 6.1e-252 874.8 963 50.4
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 6.8e-251 871.3 970 50.4
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.7e-249 866.7 994 50.1
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 3.2e-248 862.4 955 52.6
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 3.0e-246 855.9 976 50.3
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 2.0e-242 843.2 964 49.0
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 9.8e-242 840.9 949 49.6
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 7.0e-240 834.7 956 49.2
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 6.2e-236 821.6 1003 48.3
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.1e-235 820.8 961 47.5
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.2e-234 817.4 954 49.2
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 2.6e-234 816.2 965 49.5
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 9.2e-232 807.7 956 49.4
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 2.7e-231 806.2 989 48.2
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 2.3e-230 803.1 955 47.4
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.1e-229 800.8 985 47.9
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.5e-229 800.4 983 48.0
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 6.4e-225 785.0 960 46.4
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.9e-224 783.5 958 47.8
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.1e-223 780.0 977 48.0
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.0e-222 777.7 823 53.7
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 3.3e-221 772.7 945 47.1
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 2.1e-220 770.0 846 51.7
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 9.0e-219 764.6 989 46.9
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 4.4e-218 762.3 889 50.4
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 3.2e-216 756.1 950 46.1
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.0e-214 749.6 817 52.4
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 3.3e-205 719.5 958 45.1
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 2.8e-204 716.5 963 44.5
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.8e-204 716.5 985 44.3
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 3.8e-201 706.1 819 49.8
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.5e-200 703.4 988 42.9
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 8.2e-196 688.3 981 43.7
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 1.2e-194 684.5 982 43.8
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 2.0e-194 683.7 982 43.7
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 5.8e-194 682.2 882 46.0
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.1e-192 677.9 896 45.8
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 4.8e-188 662.5 740 50.7
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.5e-185 651.7 950 43.8
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 6.1e-183 645.6 1045 40.3
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 2.6e-178 630.2 732 48.2
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.2e-172 610.5 590 57.8
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 6.3e-172 609.0 641 52.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.1e-171 608.2 590 57.6
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 1.5e-170 604.4 881 43.6
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 2.5e-168 597.0 869 40.9
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 3.9e-166 589.7 666 47.9
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.2e-164 582.0 913 42.5
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.5e-162 576.6 785 46.2
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.6e-151 541.2 824 41.6
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 3.3e-144 516.9 653 44.0
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 3.6e-143 513.5 656 43.6
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 5.7e-141 506.1 665 46.0
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 5.7e-141 506.1 665 45.9
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 6.3e-140 502.7 796 40.2
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 3.2e-131 473.8 1017 33.4
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 1.3e-129 468.4 966 34.2
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-125 455.3 597 45.6
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 5.8e-125 453.0 948 34.7
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 3.7e-124 450.3 705 40.1
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 3.0e-121 440.7 706 39.5
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 1.2e-119 435.3 866 35.1
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 3.1e-118 430.6 841 36.0
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.0e-113 414.1 529 46.5
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 4.2e-107 393.7 497 48.3
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 6.6e-97 359.8 358 55.3
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 9.6e-96 355.9 607 37.9
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.6e-95 355.1 612 38.2
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.8e-94 351.7 257 70.0
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.9e-88 331.6 260 65.8
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.7e-82 311.2 579 36.8
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 5.7e-72 276.9 575 36.0
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.7e-71 274.2 234 62.0
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 8.5e-68 263.1 1190 24.0
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 2.7e-66 258.1 348 44.8
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 4.8e-63 247.3 338 41.7
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.4e-62 245.0 213 56.8
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 8.2e-55 219.9 274 44.9
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 4.5e-53 214.2 142 71.8
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-51 209.1 198 53.5
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-48 199.1 230 48.7
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 5.7e-48 197.2 276 42.0
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.9e-43 182.2 305 37.4
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 3.0e-41 174.9 144 61.1
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 6.8e-41 173.7 186 48.9
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 5.7e-40 170.6 124 74.2
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 6.8e-33 147.1 95 76.8
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.4e-30 139.4 139 54.7
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 4.5e-29 134.4 217 38.7
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 2.3e-28 132.1 119 54.6
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 6.6e-28 130.6 428 29.0
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 2.6e-24 118.6 226 35.8
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 5.7e-24 117.5 95 60.0
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 4.6e-21 107.8 141 41.8
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 7.8e-21 107.1 149 44.3
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 3.6e-18 98.2 284 28.5
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-17 96.3 155 38.1
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.8e-17 95.9 146 42.5
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 4.4e-16 91.3 155 36.1
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.7e-15 89.4 105 47.6
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 8.3e-15 87.0 228 31.1
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.4e-14 86.3 63 66.7
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 4.1e-14 84.7 128 39.1
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 3.5e-13 81.6 115 40.0
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 7.8e-13 80.5 115 39.1
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 5.0e-12 77.8 86 47.7
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.1e-11 76.6 87 46.0
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 1.5e-11 76.3 54 61.1
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 3.3e-11 75.1 87 44.8
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 3.3e-11 75.1 87 44.8
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 3.6e-10 71.6 131 37.4
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 1.4e-09 69.7 97 41.2
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 3.1e-09 68.6 156 32.1
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 1.7e-07 62.8 85 42.4
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 1.7e-07 62.8 85 42.4
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 2.9e-07 62.0 105 36.2


User provided reference genes

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