Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.2e-291 1005.7 504 100.0
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 1.3e-240 836.3 514 80.5
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 9.2e-239 830.1 505 83.0
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 1.2e-238 829.7 505 83.0
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 2.9e-232 808.5 481 84.4
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 1.9e-228 795.8 515 78.1
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 5.6e-228 794.3 503 78.7
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 2.2e-224 782.3 534 74.7
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 9.5e-220 766.9 509 77.2
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 8.3e-216 753.8 462 82.5
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 7.8e-206 720.7 509 73.3
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 6.9e-186 654.4 520 64.0
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 9.0e-186 654.1 516 64.7
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 5.8e-185 651.4 523 64.6
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 2.9e-184 649.0 524 64.5
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 3.8e-184 648.7 527 64.3
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 5.5e-183 644.8 518 63.7
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 5.5e-183 644.8 515 65.0
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 7.1e-183 644.4 515 63.9
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 7.1e-183 644.4 501 66.5
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 9.3e-183 644.0 519 64.2
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 7.9e-182 641.0 518 63.7
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.3e-181 640.2 510 64.7
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 2.3e-181 639.4 513 63.5
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 8.7e-181 637.5 518 63.7
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 7.4e-180 634.4 507 63.3
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.3e-179 633.6 515 64.9
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 1.6e-179 633.3 513 62.0
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 3.7e-179 632.1 514 64.0
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 4.8e-179 631.7 506 65.6
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 1.4e-178 630.2 517 63.2
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 3.1e-178 629.0 515 64.7
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 6.9e-178 627.9 506 63.4
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 2.0e-177 626.3 516 62.8
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 2.0e-177 626.3 524 63.9
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 2.6e-177 625.9 521 64.1
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 4.5e-177 625.2 515 64.3
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 5.8e-177 624.8 514 62.6
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 8.4e-176 620.9 514 62.8
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.9e-175 619.8 519 62.6
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 5.5e-175 618.2 519 62.0
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 5.5e-175 618.2 530 61.7
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 9.3e-175 617.5 519 64.0
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 1.6e-174 616.7 502 63.3
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 4.6e-174 615.1 500 62.8
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.0e-173 614.0 508 62.6
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 1.0e-173 614.0 487 64.9
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.8e-173 613.2 514 61.5
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.8e-173 613.2 518 61.6
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 2.3e-173 612.8 494 62.8
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 3.0e-173 612.5 498 63.7
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 3.9e-173 612.1 522 61.5
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 7.4e-172 607.8 524 60.1
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 7.4e-172 607.8 520 63.5
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 9.6e-172 607.4 523 60.0
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 2.1e-171 606.3 517 62.9
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 2.1e-171 606.3 505 61.2
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 3.7e-171 605.5 542 60.1
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 3.7e-171 605.5 508 62.4
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 6.3e-171 604.7 524 60.9
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.4e-170 603.6 519 61.7
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 2.4e-170 602.8 520 63.1
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 2.4e-170 602.8 520 63.1
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 3.1e-170 602.4 526 60.3
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 5.3e-170 601.7 520 62.9
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 1.2e-169 600.5 501 62.5
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 2.2e-168 596.3 572 56.6
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 3.8e-168 595.5 523 58.7
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 8.5e-168 594.3 541 60.1
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 8.5e-168 594.3 498 62.0
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.1e-167 594.0 528 59.7
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.4e-167 593.6 617 54.8
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.9e-167 593.2 538 58.4
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.6e-166 590.1 521 61.0
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.7e-166 589.3 531 58.2
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 2.7e-166 589.3 506 61.3
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 4.6e-166 588.6 528 56.8
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 6.1e-166 588.2 506 60.9
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 7.9e-166 587.8 544 58.5
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 1.6e-163 580.1 559 57.2
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 2.8e-163 579.3 480 63.1
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.8e-162 576.6 514 59.3
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.1e-162 575.9 479 62.2
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 1.5e-161 573.5 509 58.9
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 2.0e-156 556.6 534 56.2
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 1.8e-154 550.1 504 58.1
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 4.1e-154 548.9 514 56.0
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.4e-151 540.4 433 65.6
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 7.9e-150 534.6 553 53.7
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.3e-149 533.1 557 53.3
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 3.7e-147 525.8 543 52.1
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 2.9e-144 516.2 513 55.6
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.7e-142 509.6 520 53.7
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 3.6e-142 509.2 322 75.5
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 8.2e-139 498.0 441 59.9
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.0e-132 476.9 498 54.0
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 5.7e-132 475.3 380 63.7
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.8e-131 473.0 502 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 5.7e-124 448.7 502 48.8
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.7e-123 447.2 514 50.4
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 7.0e-122 441.8 514 46.7
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 1.9e-111 407.1 245 78.4
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.7e-107 394.0 429 51.0
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 2.2e-107 393.7 249 75.9
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.3e-104 384.4 519 46.1
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 2.1e-102 377.1 380 54.5
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.9e-98 364.0 296 59.5
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 4.1e-98 362.8 301 56.8
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 3.9e-96 356.3 501 43.1
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.2e-93 345.9 203 77.8
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 1.6e-86 324.3 349 53.3
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.9e-82 310.8 395 49.1
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.9e-79 300.8 272 61.8
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 2.1e-78 297.4 404 45.5
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.3e-75 288.1 160 82.5
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 7.1e-74 282.3 160 80.6
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 5.1e-72 276.2 498 36.3
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 3.3e-71 273.5 506 34.0
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.1e-65 254.2 242 56.2
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 7.9e-65 252.3 479 36.7
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.3e-64 251.5 299 49.8
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 3.7e-62 243.4 268 53.4
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.7e-62 243.4 137 79.6
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 1.8e-61 241.1 273 50.5
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 8.4e-59 232.3 283 47.7
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.9e-55 221.1 269 43.1
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 3.7e-54 216.9 125 79.2
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.6e-49 201.4 271 41.7
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 3.9e-40 170.2 93 84.9
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.2e-38 164.5 230 46.5
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 5.9e-36 156.4 85 85.9
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 9.4e-34 149.1 123 58.5
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.7e-33 147.5 329 32.8
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 9.4e-26 122.5 86 69.8
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 9.4e-26 122.5 331 26.3
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 2.2e-22 111.3 543 24.7
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 1.8e-21 108.2 82 65.9
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.4e-15 87.4 55 74.5
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.8e-14 83.6 60 61.7
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 3.8e-11 73.9 62 61.3
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 3.3e-10 70.9 232 27.6
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 6.1e-09 66.6 169 27.2
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 2.0e-07 61.6 45 64.4
Medtr5g035500 Medicago truncatula HOM05D005206 ORTHO05D006219 5.7e-07 60.1 42 71.4


User provided reference genes

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