Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18033_v3 Cicer arietinum L. HOM05D000762 ORTHO05D006179 3.5e-88 328.2 156 100.0
Ca_25069_v3 Cicer arietinum L. HOM05D000762 ORTHO05D006179 7.3e-86 320.5 152 100.0
TPR.G30313 Trifolium pratense HOM05D000762 ORTHO05D006179 4.7e-77 291.2 152 90.8
Medtr5g026280 Medicago truncatula HOM05D000762 ORTHO05D006179 1.7e-74 282.7 152 87.5
Glyma.09G216700 Glycine max HOM05D000762 ORTHO05D006179 1.4e-73 279.6 152 86.2
arahy.Tifrunner.gnm1.ann1.GB6XSM Arachis hypogaea HOM05D000762 ORTHO05D006179 4.1e-73 278.1 152 84.9
arahy.Tifrunner.gnm1.ann1.RB8GEU Arachis hypogaea HOM05D000762 ORTHO05D006179 4.1e-73 278.1 152 84.9
VMungo1215G2102 Vigna mungo HOM05D000762 ORTHO05D006179 7.1e-73 277.3 153 85.6
Lalb_Chr16g0380531 Lupinus albus HOM05D000762 ORTHO05D006179 2.7e-72 275.4 152 83.6
Psat2g144120 Pisum sativum HOM05D000762 ORTHO05D006179 2.7e-72 275.4 152 85.5
Phvul.002G124000 Phaseolus vulgaris HOM05D000762 ORTHO05D006179 1.7e-71 272.7 153 85.0
Lj2g0003478 Lotus japonicus HOM05D000762 ORTHO05D006179 3.0e-71 271.9 152 83.6
TPR.G30319 Trifolium pratense HOM05D000762 ORTHO05D006179 3.9e-71 271.6 152 84.9
Glyma.01G151466 Glycine max HOM05D000762 ORTHO05D006179 5.1e-71 271.2 156 83.3
FAN04G2135 Fragaria x ananassa HOM05D000762 ORTHO05D006179 2.1e-64 249.2 151 72.8
RcHm_v2.0_Chr7g0214871 Rosa chinensis HOM05D000762 ORTHO05D006179 2.1e-64 249.2 151 74.2
CiPaw.11G076700 Carya illinoinensis HOM05D000762 ORTHO05D006179 5.1e-63 244.6 152 73.0
FAN13G2277 Fragaria x ananassa HOM05D000762 ORTHO05D006179 5.1e-63 244.6 151 72.8
FAN13G3000 Fragaria x ananassa HOM05D000762 ORTHO05D006179 6.6e-63 244.2 151 72.8
FAN18G3726 Fragaria x ananassa HOM05D000762 ORTHO05D006179 1.1e-62 243.4 151 72.2
HanXRQChr07g0204501 Helianthus annuus HOM05D000762 ORTHO05D006179 1.9e-62 242.7 151 70.9
Sabra03G0072900 Salix brachista HOM05D000762 ORTHO05D006179 1.9e-62 242.7 152 70.4
FvH4_5g24460 Fragaria vesca HOM05D000762 ORTHO05D006179 7.3e-62 240.7 151 71.5
FAN08G1370 Fragaria x ananassa HOM05D000762 ORTHO05D006179 7.3e-62 240.7 151 70.9
CSS0006761 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D006179 1.6e-61 239.6 149 73.2
CSS0047392 Camellia sinensis var. sinensis HOM05D000762 ORTHO05D006179 1.6e-61 239.6 149 73.2
QL12p002432 Quercus lobata HOM05D000762 ORTHO05D006179 1.6e-61 239.6 151 72.2
Potri.003G106000 Populus trichocarpa HOM05D000762 ORTHO05D006179 2.8e-61 238.8 152 68.4
MD16G1287200 Malus domestica HOM05D000762 ORTHO05D006179 6.2e-61 237.7 152 70.4
Haze_08030 Corylus avellana HOM05D000762 ORTHO05D006179 1.4e-60 236.5 152 71.1
Thecc.03G322500 Theobroma cacao HOM05D000762 ORTHO05D006179 2.4e-60 235.7 152 70.4
Prupe.5G016000 Prunus persica HOM05D000762 ORTHO05D006179 1.2e-59 233.4 150 70.7
Actinidia30332 Actinidia chinensis HOM05D000762 ORTHO05D006179 2.0e-59 232.6 148 69.6
Manes.15G190150 Manihot esculenta HOM05D000762 ORTHO05D006179 2.0e-59 232.6 152 67.8
GSVIVG01036916001 Vitis vinifera HOM05D000762 ORTHO05D006179 2.6e-59 232.3 152 69.7
Gohir.D12G203400 Gossypium hirsutum HOM05D000762 ORTHO05D006179 4.5e-59 231.5 152 69.7
Gorai.008G218200 Gossypium raimondii HOM05D000762 ORTHO05D006179 4.5e-59 231.5 152 69.7
Duzib068G0194 Durio zibethinus HOM05D000762 ORTHO05D006179 7.6e-59 230.7 152 69.7
AUR62027292 Chenopodium quinoa HOM05D000762 ORTHO05D006179 1.3e-58 229.9 149 68.5
COL.COLO4_16726 Corchorus olitorius HOM05D000762 ORTHO05D006179 1.3e-58 229.9 152 67.1
PGSC0003DMG401015717 Solanum tuberosum HOM05D000762 ORTHO05D006179 1.7e-58 229.6 148 70.9
EL10Ac5g11870 Beta vulgaris HOM05D000762 ORTHO05D006179 2.9e-58 228.8 148 68.2
Dinv09425 Davidia involucrata HOM05D000762 ORTHO05D006179 3.8e-58 228.4 148 72.3
SGA_v2.0_scaffold27G11724 Striga asiatica HOM05D000762 ORTHO05D006179 6.4e-58 227.6 148 69.6
Ciclev10001424m.g Citrus clementina HOM05D000762 ORTHO05D006179 1.1e-57 226.9 152 69.7
TWI32G0449 Tripterygium wilfordii HOM05D000762 ORTHO05D006179 1.1e-57 226.9 152 72.4
Gohir.A12G200600 Gossypium hirsutum HOM05D000762 ORTHO05D006179 1.4e-57 226.5 152 69.1
Sopen08g023620 Solanum pennellii HOM05D000762 ORTHO05D006179 2.4e-57 225.7 148 70.3
vmacro00115 Vaccinium macrocarpon HOM05D000762 ORTHO05D006179 3.2e-57 225.3 148 68.2
MELO3C010539.2 Cucumis melo HOM05D000762 ORTHO05D006179 4.2e-57 224.9 153 66.7
TAR374G0039 Trochodendron aralioides HOM05D000762 ORTHO05D006179 4.2e-57 224.9 148 68.2
Duzib114G0367 Durio zibethinus HOM05D000762 ORTHO05D006179 5.4e-57 224.6 152 69.7
Atru.chr6.2127 Acer truncatum HOM05D000762 ORTHO05D006179 7.1e-57 224.2 152 69.7
Sed0017777 Sechium edule HOM05D000762 ORTHO05D006179 1.2e-56 223.4 153 68.6
ECA233G0984 Erigeron canadensis HOM05D000762 ORTHO05D006179 2.7e-56 222.2 148 67.6
Nitab4.5_0001132g0020 Nicotiana tabacum HOM05D000762 ORTHO05D006179 4.6e-56 221.5 148 68.9
THA.LOC104814382 Tarenaya hassleriana HOM05D000762 ORTHO05D006179 7.9e-56 220.7 155 67.7
CsaV3_4G037910 Cucumis sativus L. HOM05D000762 ORTHO05D006179 1.0e-55 220.3 154 66.9
Solyc08g075010.4 Solanum lycopersicum HOM05D000762 ORTHO05D006179 1.0e-55 220.3 148 69.6
Sc07g0008180 Simmondsia chinensis HOM05D000762 ORTHO05D006179 1.8e-55 219.5 152 65.8
PGR031G0157 Punica granatum HOM05D000762 ORTHO05D006179 2.3e-55 219.2 148 68.9
Eucgr.D02578 Eucalyptus grandis HOM05D000762 ORTHO05D006179 3.9e-55 218.4 149 69.1
MSTRG.11843 Avicennia marina HOM05D000762 ORTHO05D006179 5.1e-55 218.0 148 68.2
Sp1g27300 Schrenkiella parvula HOM05D000762 ORTHO05D006179 5.1e-55 218.0 152 69.1
AUR62007444 Chenopodium quinoa HOM05D000762 ORTHO05D006179 6.7e-55 217.6 171 59.6
Hma1.2p1_0262F.1_g105200 Hydrangea macrophylla HOM05D000762 ORTHO05D006179 6.7e-55 217.6 148 67.6
Hma1.2p1_0262F.1_g105210 Hydrangea macrophylla HOM05D000762 ORTHO05D006179 6.7e-55 217.6 148 67.6
AL1G49550 Arabidopsis lyrata HOM05D000762 ORTHO05D006179 1.1e-54 216.9 152 68.4
BcaC07g37754 Brassica carinata HOM05D000762 ORTHO05D006179 1.1e-54 216.9 152 67.8
BolC8t48139H Brassica oleracea HOM05D000762 ORTHO05D006179 1.1e-54 216.9 152 67.8
BcaB07g32811 Brassica carinata HOM05D000762 ORTHO05D006179 1.5e-54 216.5 152 67.1
Nn1g09246 Nelumbo nucifera HOM05D000762 ORTHO05D006179 1.9e-54 216.1 150 66.7
Aa31LG2G14450 Aethionema arabicum HOM05D000762 ORTHO05D006179 3.3e-54 215.3 156 66.7
BcaB04g18149 Brassica carinata HOM05D000762 ORTHO05D006179 4.3e-54 214.9 152 67.8
BcaC05g27179 Brassica carinata HOM05D000762 ORTHO05D006179 5.6e-54 214.5 151 66.2
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 5.6e-54 214.5 152 68.4
C05p30750 Brassica napus HOM05D000762 ORTHO05D006179 5.6e-54 214.5 151 66.2
BolC5t31807H Brassica oleracea HOM05D000762 ORTHO05D006179 5.6e-54 214.5 151 66.2
BraA08t33051Z Brassica rapa HOM05D000762 ORTHO05D006179 5.6e-54 214.5 154 68.8
Cc08_g04650 Coffea canephora HOM05D000762 ORTHO05D006179 5.6e-54 214.5 148 65.5
Peaxi162Scf00157g01314 Petunia axillaris HOM05D000762 ORTHO05D006179 5.6e-54 214.5 147 67.3
Migut.A00494 Erythranthe guttata HOM05D000762 ORTHO05D006179 7.4e-54 214.2 149 67.8
Lsat_1_v5_gn_8_24940 Lactuca sativa HOM05D000762 ORTHO05D006179 9.6e-54 213.8 150 66.7
DCAR_030950 Daucus carota HOM05D000762 ORTHO05D006179 2.1e-53 212.6 143 67.1
MBI04_g30784_MAGBIO Magnolia biondii HOM05D000762 ORTHO05D006179 2.1e-53 212.6 148 66.2
A09p34690 Brassica napus HOM05D000762 ORTHO05D006179 8.1e-53 210.7 151 64.9
CARHR287020 Cardamine hirsuta HOM05D000762 ORTHO05D006179 1.1e-52 210.3 152 65.8
CANSAT11G0376 Cannabis sativa HOM05D000762 ORTHO05D006179 2.4e-52 209.1 153 65.4
Carub.0001s2992 Capsella rubella HOM05D000762 ORTHO05D006179 2.4e-52 209.1 148 68.9
SalBow4G2613 Salvia bowleyana HOM05D000762 ORTHO05D006179 2.4e-52 209.1 148 65.5
Thhalv10007841m.g Eutrema salsugineum HOM05D000762 ORTHO05D006179 2.6e-51 205.7 152 65.1
Nitab4.5_0002799g0030 Nicotiana tabacum HOM05D000762 ORTHO05D006179 2.2e-50 202.6 148 68.2
Rhsim11G0040700 Rhododendron simsii HOM05D000762 ORTHO05D006179 7.1e-49 197.6 215 47.4
Aqoxy3G01997 Aquilegia oxysepala HOM05D000762 ORTHO05D006179 9.3e-49 197.2 148 62.2
Os05g0389500 Oryza sativa ssp. japonica HOM05D000762 ORTHO05D006179 2.3e-47 192.6 148 59.5
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 5.6e-46 188.0 149 59.1
ECA233G2303 Erigeron canadensis HOM05D000762 ORTHO05D006179 1.3e-45 186.8 128 64.8
AagrBONN_evm.TU.Sc2ySwM_344.1125 Anthoceros agrestis HOM05D000762 ORTHO05D006179 2.8e-45 185.7 164 56.1
ClCG11G016210 Citrullus lanatus HOM05D007105 ORTHO05D009304 6.2e-45 184.5 123 70.7
CDE11G1126 Ceratophyllum demersum HOM05D000762 ORTHO05D006179 1.4e-44 183.3 151 57.0
Hund11080 Selenicereus undatus HOM05D000762 ORTHO05D006179 1.8e-44 183.0 266 39.1
HPP92_022767 Vanilla planifolia HOM05D000762 ORTHO05D006179 4.9e-42 174.9 148 56.1
SMO347G0652 Selaginella moellendorffii HOM05D000762 ORTHO05D006179 4.6e-40 168.3 159 54.1
ATR0568G206 Amborella trichopoda HOM05D000762 ORTHO05D006179 2.3e-39 166.0 148 51.4
SHI33824 Sapria himalayana HOM05D000762 ORTHO05D006179 3.3e-38 162.2 184 49.5
Atru.BG.144.p Acer truncatum HOM05D000762 ORTHO05D006179 1.3e-37 160.2 152 56.6
SMO167G0012 Selaginella moellendorffii HOM05D000762 ORTHO05D006179 2.4e-36 156.0 159 50.3
QL12p002321 Quercus lobata HOM05D003369 ORTHO05D006179 1.2e-35 153.7 102 67.6
AL1G49510 Arabidopsis lyrata HOM05D000762 ORTHO05D006179 1.0e-34 150.6 149 53.0
Mapoly0010s0066 Marchantia polymorpha HOM05D000762 ORTHO05D006179 2.7e-32 142.5 181 43.1
Hma1.2p1_3942F.1_g338020 Hydrangea macrophylla HOM05D000762 ORTHO05D006179 4.3e-30 135.2 86 69.8
Lj8A371T19 Lonicera japonica HOM05D000762 ORTHO05D006179 9.7e-30 134.0 94 67.0
AT1G31530 Arabidopsis thaliana HOM05D000762 ORTHO05D006179 4.1e-28 128.6 148 48.0
PSO063G1071 Papaver somniferum HOM05D000762 ORTHO05D006179 1.7e-26 123.2 96 61.5
CARHR286990 Cardamine hirsuta HOM05D000762 ORTHO05D006179 2.5e-25 119.4 137 48.2
SHI33058 Sapria himalayana HOM05D000762 ORTHO05D006179 4.8e-21 105.1 137 42.3
Cpa.g.sc24.94 Carica papaya HOM05D000762 ORTHO05D006179 5.5e-17 91.7 60 70.0
SHI32997 Sapria himalayana HOM05D000762 ORTHO05D006179 5.5e-17 91.7 135 40.7
AT1G31500 Arabidopsis thaliana HOM05D000762 ORTHO05D006179 8.0e-16 87.8 50 80.0
CsaV3_5G019990 Cucumis sativus L. HOM05D000762 ORTHO05D006179 3.9e-15 85.5 51 70.6
SHI53217 Sapria himalayana HOM05D000762 ORTHO05D006179 6.7e-15 84.7 100 50.0
SHI53758 Sapria himalayana HOM05D000762 ORTHO05D006179 6.7e-15 84.7 100 50.0
SHI53852 Sapria himalayana HOM05D000762 ORTHO05D006179 6.7e-15 84.7 100 50.0
SHI54089 Sapria himalayana HOM05D000762 ORTHO05D006179 6.7e-15 84.7 100 50.0
CsaV3_UNG224740 Cucumis sativus L. HOM05D000762 ORTHO05D006179 8.8e-15 84.3 48 72.9
SHI47635 Sapria himalayana HOM05D000762 ORTHO05D006179 1.1e-14 84.0 150 38.0
SHI48355 Sapria himalayana HOM05D000762 ORTHO05D006179 1.1e-14 84.0 150 38.0
Lj8A371G20 Lonicera japonica HOM05D000762 ORTHO05D006179 2.6e-14 82.8 50 72.0
MCO11G153 Micromonas commoda HOM05D000762 ORTHO05D002448 7.4e-14 81.3 184 35.3
MCO05G456 Micromonas commoda HOM05D000762 ORTHO05D006179 9.7e-14 80.9 157 34.4
Pp3c22_8300 Physcomitrium patens HOM05D000762 ORTHO05D006179 8.2e-13 77.8 98 41.8
Cfa022094 Carpinus fangiana HOM05D000762 ORTHO05D002448 1.4e-12 77.0 193 30.6
CBR_g57848 Chara braunii HOM05D000762 ORTHO05D006179 7.0e-12 74.7 71 46.5
Hma1.2p1_0573F.1_g181320 Hydrangea macrophylla HOM05D000762 ORTHO05D006179 3.5e-11 72.4 62 58.1
Cre11.g475900 Chlamydomonas reinhardtii HOM05D000762 ORTHO05D002448 1.7e-10 70.1 188 33.0
AagrBONN_evm.TU.Sc2ySwM_228.1147 Anthoceros agrestis HOM05D000762 ORTHO05D002448 2.9e-10 69.3 180 34.4
PRCOL_00000001 Prasinoderma coloniale HOM05D000762 ORTHO05D002448 3.8e-10 68.9 188 33.0
Atru.chr2.2737 Acer truncatum HOM05D000762 ORTHO05D006179 5.0e-10 68.6 81 49.4
CBR_g48381 Chara braunii HOM05D000762 ORTHO05D002448 5.0e-10 68.6 186 31.2
SalBow5G3324 Salvia bowleyana HOM05D000762 ORTHO05D002234 5.0e-10 68.6 209 28.2
Nn5g30116 Nelumbo nucifera HOM05D000762 ORTHO05D002448 8.5e-10 67.8 181 30.4
RcHm_v2.0_Chr7g0239031 Rosa chinensis HOM05D000762 ORTHO05D002448 8.5e-10 67.8 177 30.5
Gohir.A04G053600 Gossypium hirsutum HOM05D000762 ORTHO05D002448 1.1e-09 67.4 179 31.8
Gohir.D04G094600 Gossypium hirsutum HOM05D000762 ORTHO05D002448 1.1e-09 67.4 179 31.8
Gorai.009G392500 Gossypium raimondii HOM05D000762 ORTHO05D002448 1.1e-09 67.4 179 31.8
Nn4g23757 Nelumbo nucifera HOM05D000762 ORTHO05D002234 1.5e-09 67.0 197 29.9
THA.LOC104820825 Tarenaya hassleriana HOM05D000762 ORTHO05D002448 2.5e-09 66.2 180 32.2
Aqoxy5G01914 Aquilegia oxysepala HOM05D000762 ORTHO05D002448 4.2e-09 65.5 180 31.7
Lalb_Chr25g0287611 Lupinus albus HOM05D000762 ORTHO05D002448 5.5e-09 65.1 184 31.5
Cc04_g07420 Coffea canephora HOM05D000762 ORTHO05D002234 9.4e-09 64.3 205 27.8
Os10g0412100 Oryza sativa ssp. japonica HOM05D000762 ORTHO05D002448 9.4e-09 64.3 180 30.6
Cpa.g.sc36.128 Carica papaya HOM05D000762 ORTHO05D002448 1.2e-08 63.9 165 32.7
Ah.11g045090 Amaranthus hybridus HOM05D000762 ORTHO05D002234 1.6e-08 63.5 190 27.9
Duzib093G1877 Durio zibethinus HOM05D000762 ORTHO05D002448 2.7e-08 62.8 180 32.2
CsaV3_1G003690 Cucumis sativus L. HOM05D000762 ORTHO05D002234 3.6e-08 62.4 209 27.8
FvH4_5g37360 Fragaria vesca HOM05D000762 ORTHO05D002448 3.6e-08 62.4 173 30.6
FAN18G2019 Fragaria x ananassa HOM05D000762 ORTHO05D002448 3.6e-08 62.4 173 30.6
Os03g0166800 Oryza sativa ssp. japonica HOM05D000762 ORTHO05D002448 3.6e-08 62.4 180 30.6
Thecc.08G107300 Theobroma cacao HOM05D000762 ORTHO05D002448 3.6e-08 62.4 175 33.7
TAR625G1237 Trochodendron aralioides HOM05D000762 ORTHO05D002448 4.7e-08 62.0 170 33.5
MELO3C017294.2 Cucumis melo HOM05D000762 ORTHO05D002234 6.1e-08 61.6 204 28.4
CsaV3_1G003790 Cucumis sativus L. HOM05D000762 ORTHO05D002234 8.0e-08 61.2 210 25.7
QL12p036725 Quercus lobata HOM05D000762 ORTHO05D002448 8.0e-08 61.2 174 28.7
HPP92_024815 Vanilla planifolia HOM05D000762 ORTHO05D002234 8.0e-08 61.2 196 29.6
MCO03G449 Micromonas commoda HOM05D000762 ORTHO05D006179 1.0e-07 60.8 126 29.4
PRCOL_00004507 Prasinoderma coloniale HOM05D000762 ORTHO05D006179 1.0e-07 60.8 141 29.1
Manes.01G020000 Manihot esculenta HOM05D000762 ORTHO05D002234 1.4e-07 60.5 204 28.4
Sc01g0000440 Simmondsia chinensis HOM05D000762 ORTHO05D002448 1.4e-07 60.5 172 32.0
CDE10G0101 Ceratophyllum demersum HOM05D000762 ORTHO05D002448 2.3e-07 59.7 172 31.4
Dinv44771 Davidia involucrata HOM05D000762 ORTHO05D002448 2.3e-07 59.7 175 30.9
Peaxi162Scf00015g00943 Petunia axillaris HOM05D000762 ORTHO05D002234 3.0e-07 59.3 154 31.8
Haze_26765 Corylus avellana HOM05D001737 ORTHO05D006179 4.0e-07 58.9 163 28.2
GSVIVG01008252001 Vitis vinifera HOM05D000762 ORTHO05D002234 4.0e-07 58.9 205 28.8
MELO3C017303.2 Cucumis melo HOM05D000762 ORTHO05D002234 1.2e-06 57.4 210 25.7
FAN08G3592 Fragaria x ananassa HOM05D000762 ORTHO05D002448 1.2e-06 57.4 152 30.9
COL.COLO4_16248 Corchorus olitorius HOM05D000762 ORTHO05D002234 2.6e-06 56.2 208 26.4
GSVIVG01008276001 Vitis vinifera HOM05D000762 ORTHO05D002234 4.4e-06 55.5 207 26.1
Zm00001eb223140 Zea mays HOM05D000762 ORTHO05D002448 5.7e-06 55.1 160 30.6
Sopen03g038540 Solanum pennellii HOM05D000762 ORTHO05D002234 7.5e-06 54.7 206 24.3
Atru.chr9.785 Acer truncatum HOM05D000762 ORTHO05D002234 9.7e-06 54.3 205 27.3
MD08G1182500 Malus domestica HOM05D000762 ORTHO05D002448 9.7e-06 54.3 170 28.8


User provided reference genes

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