Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 0.0e+00 1099.0 602 100.0
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.5e-224 783.1 623 76.1
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 2.2e-223 779.2 577 79.5
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 2.0e-216 756.1 612 72.7
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 2.8e-194 682.6 693 63.2
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 6.3e-194 681.4 625 67.7
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 2.4e-193 679.5 625 67.2
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.6e-189 666.8 723 59.6
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 3.7e-186 655.6 723 57.5
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 9.1e-169 597.8 596 63.9
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 5.2e-164 582.0 443 79.2
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 4.7e-157 558.9 619 57.5
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 4.0e-156 555.8 624 53.7
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.7e-154 550.4 621 58.1
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 2.9e-154 549.7 671 55.6
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 2.3e-151 540.0 625 52.6
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 3.6e-149 532.7 624 54.2
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 8.9e-148 528.1 621 56.7
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.2e-147 527.7 612 53.8
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 7.5e-147 525.0 635 52.1
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 2.4e-145 520.0 618 55.5
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 3.2e-145 519.6 616 53.9
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 4.1e-145 519.2 655 48.2
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.2e-144 517.7 623 52.2
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.1e-142 511.1 628 51.0
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 1.9e-142 510.4 621 50.7
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 2.5e-142 510.0 627 51.5
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 8.1e-141 505.0 628 52.1
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 3.1e-140 503.1 614 54.6
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 8.9e-140 501.5 620 51.0
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 2.6e-139 500.0 613 54.3
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 4.4e-139 499.2 613 54.6
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.3e-138 497.7 686 51.0
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-136 491.1 628 50.5
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.3e-135 487.6 633 53.2
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 6.6e-135 485.3 698 49.0
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 8.6e-135 485.0 614 52.4
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 8.6e-135 485.0 636 48.1
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 9.5e-134 481.5 650 50.6
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.1e-133 480.3 470 59.6
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 1.4e-132 477.6 611 54.3
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 2.7e-128 463.4 655 50.5
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 4.6e-128 462.6 656 50.2
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 1.3e-127 461.1 655 44.4
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.5e-126 457.6 558 50.4
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 7.3e-126 455.3 642 51.9
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 7.3e-126 455.3 704 48.3
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 7.3e-126 455.3 647 45.4
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 2.8e-125 453.4 419 67.3
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.6e-125 453.0 597 49.7
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.4e-124 451.1 652 47.9
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.5e-123 447.6 375 61.9
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 6.4e-122 442.2 625 48.6
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.6e-120 437.6 352 62.2
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 1.6e-120 437.6 602 50.8
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 2.7e-120 436.8 611 48.9
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 2.7e-120 436.8 611 48.9
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 6.0e-120 435.6 585 50.8
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.7e-119 434.1 627 49.0
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 2.3e-119 433.7 352 63.1
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 3.0e-119 433.3 354 62.4
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 5.1e-119 432.6 611 48.6
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 1.9e-118 430.6 674 47.2
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 3.6e-117 426.4 610 48.0
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 3.6e-117 426.4 610 48.0
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 6.2e-117 425.6 606 50.2
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 1.8e-116 424.1 607 49.9
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 3.1e-116 423.3 607 50.6
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 3.1e-116 423.3 540 47.2
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.2e-115 421.4 666 46.8
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.2e-115 421.4 643 47.6
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 2.0e-115 420.6 560 51.6
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.0e-115 420.6 674 44.7
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.6e-115 420.2 607 50.1
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 9.9e-115 418.3 611 49.3
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 3.8e-114 416.4 615 45.4
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 8.4e-114 415.2 634 47.5
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.9e-113 414.1 572 48.8
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 3.2e-113 413.3 466 53.9
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 7.9e-112 408.7 670 43.9
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 2.8e-109 400.2 692 41.0
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 3.6e-109 399.8 604 43.4
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 9.0e-108 395.2 324 61.7
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 9.9e-107 391.7 598 46.7
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 7.1e-105 385.6 600 47.3
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 7.9e-104 382.1 644 42.5
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.5e-102 377.9 723 36.7
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.3e-102 376.3 355 55.8
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 1.5e-99 367.9 450 49.8
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 6.5e-98 362.5 491 50.3
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.5e-97 360.5 605 45.5
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 5.5e-97 359.4 349 52.7
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 2.7e-96 357.1 347 53.3
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.5e-94 351.3 599 43.7
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 9.6e-94 348.6 425 46.8
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.3e-93 348.2 613 45.0
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 9.0e-92 342.0 700 38.0
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.2e-91 341.7 346 52.3
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.5e-91 341.3 348 50.0
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 4.5e-91 339.7 346 52.0
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 4.5e-91 339.7 346 52.0
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.3e-90 338.2 345 51.6
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.1e-88 329.3 536 44.2
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 9.7e-86 322.0 696 40.7
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 3.1e-84 317.0 478 42.7
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 4.5e-83 313.2 593 39.5
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 4.5e-83 313.2 677 37.2
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.9e-81 307.8 584 40.8
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 1.5e-75 288.1 356 43.3
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.5e-75 288.1 608 40.8
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 5.9e-75 286.2 485 45.4
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.9e-73 281.2 355 40.8
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.3e-71 274.2 350 47.1
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 7.4e-70 269.2 362 38.7
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 6.1e-64 249.6 631 33.8
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 8.8e-63 245.7 177 75.1
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.7e-53 214.9 313 49.8
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.1e-52 212.2 306 45.8
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.1e-52 210.7 305 39.0
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 3.8e-50 203.8 124 80.6
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 4.2e-49 200.3 380 34.5
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 6.4e-37 159.8 311 35.4
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 6.8e-31 139.8 99 69.7
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 2.2e-29 134.8 190 43.2
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 4.0e-23 114.0 70 75.7
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.9e-21 107.8 322 34.2
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 8.1e-16 89.7 62 62.9
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 3.1e-15 87.8 112 46.4
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 7.1e-12 76.6 58 60.3
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 1.2e-11 75.9 58 55.2
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 4.3e-09 67.4 45 73.3
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 4.3e-09 67.4 54 57.4
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.8e-08 64.7 37 70.3
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 3.1e-07 61.2 340 33.5
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.4e-06 57.8 50 60.0
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 4.4e-06 57.4 55 56.4
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.8e-06 57.0 50 56.0
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.8e-06 57.0 50 56.0
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 9.9e-06 56.2 50 56.0
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 9.9e-06 56.2 50 58.0


User provided reference genes

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