Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 0.0e+00 1196.8 636 100.0
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 0.0e+00 1196.8 636 100.0
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 1.8e-260 902.5 594 82.2
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 8.8e-255 883.6 594 81.0
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 2.0e-254 882.5 594 79.0
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 1.1e-252 876.7 594 78.8
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 5.3e-252 874.4 594 79.8
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 2.6e-251 872.1 594 80.5
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 6.5e-250 867.5 594 77.6
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 1.8e-247 859.4 594 76.8
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 5.4e-244 847.8 596 76.0
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 3.6e-240 835.1 594 75.1
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 4.0e-239 831.6 594 74.7
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 1.5e-238 829.7 594 75.3
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 2.0e-238 829.3 642 70.6
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 2.6e-238 828.9 594 75.3
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 5.4e-236 821.2 594 74.1
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 1.0e-234 817.0 594 73.4
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 3.3e-233 812.0 594 72.7
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 1.5e-230 803.1 594 72.7
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.7e-227 792.3 594 71.4
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 5.9e-227 791.2 594 70.2
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 7.8e-227 790.8 594 72.6
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 2.3e-226 789.3 594 71.2
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 3.0e-226 788.9 594 70.4
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 4.3e-225 785.0 594 70.4
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 9.5e-225 783.9 594 72.6
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 1.2e-224 783.5 594 69.4
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.2e-224 783.5 594 70.5
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 2.8e-224 782.3 594 70.9
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 1.0e-223 780.4 594 69.9
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 3.1e-223 778.9 598 70.1
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 6.8e-223 777.7 594 70.9
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 8.9e-223 777.3 594 69.7
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 6.4e-221 771.2 680 63.5
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 1.4e-220 770.0 594 69.9
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 3.2e-220 768.8 594 68.7
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 6.0e-219 764.6 594 68.4
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.3e-218 762.7 594 68.4
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 2.8e-216 755.7 594 67.2
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 4.7e-216 755.0 594 69.5
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 1.8e-215 753.1 594 68.0
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 2.2e-213 746.1 594 67.5
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 2.2e-213 746.1 594 68.0
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 4.9e-213 745.0 594 67.0
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 6.4e-213 744.6 594 67.7
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 2.4e-212 742.7 594 68.4
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.5e-209 733.4 748 57.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 2.8e-208 729.2 594 67.0
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 1.4e-207 726.9 620 65.0
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.1e-207 725.7 594 66.3
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 1.2e-206 723.8 594 66.8
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 3.4e-206 722.2 594 65.8
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 4.4e-206 721.8 594 66.8
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 5.8e-206 721.5 595 64.5
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 9.9e-206 720.7 594 65.5
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 1.7e-205 719.9 594 67.3
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 4.9e-205 718.4 594 65.8
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.1e-204 717.2 594 66.5
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 4.1e-204 715.3 594 66.8
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 5.4e-204 714.9 600 64.8
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 1.2e-203 713.8 603 64.5
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 1.2e-203 713.8 603 64.5
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.0e-202 710.7 552 69.4
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 3.0e-202 709.1 615 63.3
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 5.2e-199 698.4 596 63.3
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 5.2e-199 698.4 594 64.1
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 7.1e-196 688.0 594 63.3
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 1.6e-195 686.8 595 65.2
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 3.5e-195 685.6 595 65.0
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 3.5e-195 685.6 594 62.8
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 1.3e-194 683.7 595 64.9
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.7e-194 683.3 588 63.8
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 6.2e-192 674.9 595 62.7
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 5.8e-190 668.3 545 66.1
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.9e-188 663.3 588 62.2
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 7.9e-187 657.9 594 60.6
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.3e-186 656.4 596 60.6
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.1e-185 654.1 594 60.6
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 1.8e-183 646.7 633 56.6
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 1.2e-182 644.0 594 59.3
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 2.2e-181 639.8 594 60.3
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 4.2e-180 635.6 594 59.3
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 5.5e-180 635.2 594 60.8
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 2.8e-176 622.9 594 59.3
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 1.5e-174 617.1 594 57.9
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 9.6e-169 597.8 626 55.6
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 2.9e-157 559.7 621 49.4
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 8.5e-149 531.6 336 83.0
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 2.2e-144 516.9 594 47.1
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.8e-141 506.1 361 73.7
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 7.0e-135 485.3 589 47.0
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 7.7e-134 481.9 436 61.2
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.6e-131 473.0 600 47.3
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 8.5e-125 451.8 282 82.3
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 9.5e-124 448.4 595 44.9
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.1e-119 433.3 246 89.8
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 3.9e-109 399.8 249 83.9
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 3.0e-101 373.6 570 41.6
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.9e-88 330.5 173 94.2
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.5e-76 291.6 384 44.3
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.9e-76 291.2 600 34.3
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 1.3e-67 261.9 353 44.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.6e-62 245.0 320 45.9
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 9.0e-58 229.2 599 30.1
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 6.0e-54 216.5 140 82.1
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.1e-50 203.8 139 79.1
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 3.4e-49 200.7 192 58.3
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 1.0e-48 199.1 206 53.4
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.9e-47 194.9 187 56.1
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 5.0e-40 170.2 142 64.1
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.7e-38 163.7 88 92.0
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 8.8e-37 159.5 166 53.6
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.4e-34 152.1 106 76.4
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.8e-21 108.6 64 82.8
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 6.7e-21 106.7 64 81.2
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 2.6e-20 104.8 106 58.5
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 3.8e-16 90.9 131 43.5
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 5.0e-16 90.5 174 35.6
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.9e-15 88.6 60 76.7
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 2.1e-14 85.1 84 54.8
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.0e-13 82.8 77 57.1
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.8e-13 82.0 70 61.4
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 6.3e-11 73.6 243 28.4
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.6e-09 68.9 63 61.9
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 3.8e-08 64.3 61 62.3
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 5.0e-08 63.9 56 66.1
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 4.2e-07 60.8 52 59.6
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 9.5e-07 59.7 33 87.9


User provided reference genes

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