Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.8e-234 815.1 455 100.0
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.3e-203 710.7 410 99.5
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 4.8e-146 521.9 407 74.0
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 6.7e-140 501.5 408 67.9
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 2.5e-134 483.0 378 70.4
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 4.5e-128 462.2 408 63.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 2.2e-127 459.9 436 62.8
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 7.2e-126 454.9 408 61.3
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 8.0e-125 451.4 408 62.5
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.8e-124 450.3 408 61.8
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 7.5e-123 444.9 436 57.3
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 4.8e-122 442.2 436 56.9
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 3.1e-121 439.5 436 61.5
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 4.1e-121 439.1 408 60.0
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 1.2e-120 437.6 408 58.8
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 4.5e-120 435.6 408 59.6
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 5.0e-119 432.2 408 58.1
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 1.5e-115 420.6 408 56.6
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 1.1e-113 414.5 408 57.6
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 2.4e-113 413.3 408 56.4
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 3.1e-113 412.9 408 56.4
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 5.9e-112 408.7 436 58.9
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 2.9e-111 406.4 408 56.9
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 8.6e-111 404.8 408 56.1
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 3.6e-109 399.4 408 54.7
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 2.3e-108 396.7 455 57.1
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 1.2e-107 394.4 408 53.7
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 3.4e-107 392.9 408 58.3
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 4.9e-106 389.0 408 57.1
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 4.1e-105 386.0 408 53.4
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.2e-104 384.4 407 54.3
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 1.2e-104 384.4 389 55.8
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 3.5e-104 382.9 408 53.2
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 3.0e-103 379.8 385 56.9
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 1.9e-102 377.1 408 52.0
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 9.5e-102 374.8 408 52.9
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 1.1e-100 371.3 408 49.3
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.6e-99 366.7 408 51.0
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 4.4e-99 365.9 436 55.0
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 2.2e-98 363.6 408 50.7
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.2e-98 363.6 408 53.4
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 8.3e-98 361.7 437 49.4
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 2.4e-97 360.1 408 52.9
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 3.2e-97 359.8 408 51.7
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 5.4e-97 359.0 407 50.6
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 1.2e-96 357.8 408 51.2
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 1.6e-96 357.5 389 53.2
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 1.6e-96 357.5 415 51.6
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 2.7e-96 356.7 415 51.6
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 2.7e-96 356.7 408 48.8
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 6.6e-95 352.1 408 50.7
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 2.5e-94 350.1 406 51.2
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 9.5e-94 348.2 385 54.8
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 1.2e-93 347.8 406 51.0
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 2.8e-93 346.7 389 50.9
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.5e-91 340.9 408 52.5
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 3.7e-90 336.3 408 49.5
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 8.3e-90 335.1 482 45.9
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 1.1e-89 334.7 408 50.7
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 1.4e-89 334.3 408 46.1
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.2e-88 331.3 408 49.0
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 2.1e-88 330.5 408 51.0
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 4.6e-88 329.3 436 48.4
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 1.0e-87 328.2 416 50.2
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 2.5e-86 323.6 408 45.3
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 8.1e-85 318.5 388 48.2
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 1.1e-84 318.2 387 48.3
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 3.1e-84 316.6 387 48.1
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 1.5e-83 314.3 409 46.9
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 4.9e-82 309.3 436 46.8
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 2.7e-80 303.5 408 44.4
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.3e-78 296.6 380 48.9
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 9.6e-78 295.0 408 49.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 1.2e-77 294.7 408 43.9
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 2.4e-76 290.4 408 43.9
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 5.3e-76 289.3 335 53.7
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.2e-75 288.1 408 42.4
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.6e-75 287.0 461 42.5
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 5.8e-75 285.8 408 47.5
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 7.6e-75 285.4 408 40.9
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.2e-74 283.9 408 43.9
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 7.1e-73 278.9 408 45.8
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 7.8e-72 275.4 408 39.5
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.3e-71 274.6 370 47.3
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 3.9e-71 273.1 370 47.0
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 6.4e-66 255.8 506 37.9
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 5.4e-65 252.7 408 42.2
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 7.1e-65 252.3 382 42.1
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.4e-60 238.0 392 43.4
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 8.4e-50 202.2 222 50.9
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 5.0e-42 176.4 248 46.0
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 9.4e-41 172.2 215 47.0
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 6.7e-39 166.0 367 34.1
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 9.7e-38 162.2 437 28.6
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.6e-30 137.5 191 41.4
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.8e-29 134.0 241 37.3
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 3.1e-28 130.6 101 67.3
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 7.7e-27 125.9 102 66.7
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 1.7e-26 124.8 410 25.6
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.5e-22 111.7 224 36.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 8.2e-21 105.9 359 33.7
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 4.7e-16 90.1 73 58.9
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 8.0e-16 89.4 414 23.4
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 1.2e-14 85.5 403 22.1
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.3e-13 82.0 58 65.5
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.4e-12 78.6 243 30.0
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-10 72.0 101 44.6
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 6.5e-10 69.7 321 25.5
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 2.7e-08 64.3 76 48.7


User provided reference genes

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