Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 0.0e+00 2159.0 1071 100.0
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 0.0e+00 1714.5 1208 73.6
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 0.0e+00 1687.9 1249 70.7
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 0.0e+00 1660.6 1261 69.8
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 0.0e+00 1444.5 1093 70.1
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 0.0e+00 1323.1 1091 65.5
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 0.0e+00 1323.1 1040 67.5
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 0.0e+00 1306.6 1088 64.4
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 0.0e+00 1195.6 1061 61.1
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 0.0e+00 1188.3 1047 61.4
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 0.0e+00 1171.8 869 71.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 3.4e-299 1031.9 1144 51.0
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.0e-292 1010.4 1171 49.9
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 1.6e-288 996.5 1137 49.8
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 1.0e-287 993.8 1143 49.3
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 4.4e-283 978.4 1136 49.7
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.7e-282 976.5 1134 49.4
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 2.3e-279 966.1 1023 52.1
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 5.1e-279 964.9 1134 49.4
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 3.6e-277 958.7 1125 48.5
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 4.7e-277 958.4 1145 48.0
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 2.3e-276 956.1 1145 48.0
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 8.9e-276 954.1 954 53.6
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 8.9e-276 954.1 1027 51.8
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 4.4e-275 951.8 1146 48.3
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 9.9e-275 950.7 1132 48.3
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 2.9e-274 949.1 1150 48.1
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 6.4e-274 948.0 1012 51.9
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.1e-273 947.2 1010 52.3
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.7e-271 939.9 904 55.1
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 6.6e-271 937.9 1039 50.5
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.5e-267 926.8 1074 49.8
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 7.6e-267 924.5 634 74.8
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.1e-263 911.8 1109 48.4
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 9.6e-262 907.5 1018 49.9
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 2.1e-261 906.4 1096 48.0
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 1.1e-260 904.0 1159 45.9
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 3.4e-259 899.0 1037 48.4
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 9.9e-259 897.5 1132 45.1
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.7e-258 896.7 1020 48.2
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.9e-258 896.0 1165 45.7
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 3.8e-258 895.6 1141 45.7
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 7.1e-257 891.3 1013 48.8
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 2.7e-256 889.4 1027 47.9
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 2.7e-256 889.4 1169 44.5
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 2.7e-256 889.4 882 53.7
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 5.6e-254 881.7 1022 47.9
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 7.4e-254 881.3 1020 47.4
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.4e-254 881.3 1229 43.3
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 2.1e-253 879.8 1005 49.5
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 2.1e-253 879.8 1025 48.5
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 2.8e-253 879.4 912 52.2
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 4.5e-251 872.1 1024 47.0
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 3.8e-250 869.0 1164 44.6
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.5e-249 865.1 918 51.4
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 7.1e-249 864.8 1067 46.7
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.2e-248 864.0 1096 44.7
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 3.5e-248 862.4 1031 47.5
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.9e-247 859.0 1124 44.9
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 8.7e-247 857.8 1161 44.2
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.5e-246 857.1 1149 43.4
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 2.1e-245 853.2 1147 44.3
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.4e-244 850.5 1145 43.3
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 7.6e-243 844.7 748 62.6
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.7e-242 843.6 1048 46.1
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 1.2e-240 837.4 1016 46.6
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 6.0e-240 835.1 1158 42.6
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 3.9e-239 832.4 1047 45.3
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 9.7e-238 827.8 1021 45.9
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.3e-237 827.4 1002 47.4
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.2e-235 820.8 1130 44.7
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 4.5e-235 818.9 1074 44.4
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.7e-234 817.0 1122 44.3
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 2.5e-233 813.1 1172 42.2
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 4.2e-233 812.4 648 61.7
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 2.7e-232 809.7 1142 43.4
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 4.6e-232 808.9 1119 43.1
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 4.6e-232 808.9 1098 45.3
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 2.5e-230 803.1 996 46.1
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 4.1e-228 795.8 1129 43.3
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.0e-227 793.5 1120 42.8
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 3.4e-227 792.7 1140 43.1
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 2.2e-226 790.0 1120 42.6
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 3.8e-226 789.3 923 47.5
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.6e-224 783.9 1232 40.8
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 2.1e-224 783.5 1023 43.3
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.2e-221 773.5 1163 41.5
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.2e-218 763.5 1147 41.2
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.9e-218 763.1 1055 43.9
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 3.0e-215 753.1 910 45.7
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 6.7e-215 751.9 1095 42.1
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 9.1e-212 741.5 676 56.1
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 8.5e-210 734.9 1052 43.0
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 5.5e-209 732.3 1046 43.4
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 5.5e-209 732.3 1046 43.4
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.0e-207 728.0 630 58.6
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 3.0e-207 726.5 1063 43.2
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 6.1e-200 702.2 1047 41.5
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.5e-198 697.6 1006 43.7
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 1.5e-198 697.6 1037 41.8
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 5.7e-198 695.7 738 50.3
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 5.4e-196 689.1 985 42.2
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 2.1e-192 677.2 1047 41.2
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.6e-187 661.0 686 50.6
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 2.4e-180 637.1 856 43.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.6e-163 581.3 1061 37.3
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.3e-157 561.6 915 40.2
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 2.1e-155 554.3 692 47.7
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 6.0e-147 526.2 508 54.9
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.5e-139 500.4 432 56.5
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.1e-135 488.8 685 42.9
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 9.9e-134 482.3 307 77.9
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.7e-125 454.9 759 37.4
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 4.9e-125 453.4 294 78.2
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 6.1e-107 393.3 598 38.1
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 4.4e-105 387.1 988 33.4
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 1.7e-104 385.2 655 37.1
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 2.4e-103 381.3 988 33.1
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.9e-100 371.7 1058 31.1
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 5.9e-94 350.1 342 52.9
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.4e-90 339.0 710 36.2
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 1.1e-87 329.3 301 54.5
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.8e-80 304.7 763 32.9
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.9e-76 292.0 300 50.0
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.5e-68 265.8 409 35.7
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.6e-62 244.2 419 37.0
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.6e-35 156.0 458 33.8
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 3.9e-29 134.8 295 31.2
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 5.1e-29 134.4 538 26.8
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 4.3e-28 131.3 272 34.2
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 1.5e-25 122.9 228 33.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.3e-21 109.8 250 36.0
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 7.4e-12 77.4 140 41.4
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 4.8e-11 74.7 138 39.1
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 5.0e-08 64.7 56 51.8
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 1.6e-06 59.7 39 66.7
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 2.7e-06 58.9 45 71.1


User provided reference genes

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