Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15108_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 1.7e-82 309.3 157 100.0
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 5.5e-73 277.7 157 90.4
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 4.8e-69 264.6 158 86.7
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 5.5e-65 251.1 156 84.0
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 9.3e-65 250.4 156 84.0
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 2.3e-63 245.7 158 82.9
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 8.7e-63 243.8 157 81.5
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 9.7e-62 240.4 157 80.3
Glyma.05G234300 Glycine max HOM05D004946 ORTHO05D006101 1.3e-61 240.0 157 79.6
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 1.4e-60 236.5 156 80.8
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 1.8e-60 236.1 157 79.6
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 3.1e-60 235.3 158 80.4
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 5.3e-60 234.6 155 80.6
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 9.0e-60 233.8 157 78.3
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 4.5e-59 231.5 158 77.8
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 1.9e-57 226.1 158 76.6
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 4.2e-57 224.9 151 78.8
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 4.8e-45 184.9 159 61.0
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 8.2e-45 184.1 158 62.0
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 4.1e-44 181.8 159 60.4
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 6.9e-44 181.0 157 63.7
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 4.7e-40 168.3 158 60.8
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 4.7e-40 168.3 158 60.8
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 4.7e-40 168.3 161 59.6
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 2.3e-39 166.0 158 57.6
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 2.3e-39 166.0 157 60.5
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 3.0e-39 165.6 161 60.2
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 3.9e-39 165.2 160 61.2
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 3.9e-39 165.2 159 59.1
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 5.2e-39 164.9 158 60.1
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.5e-38 163.3 161 59.0
Cpa.g.sc3.508 Carica papaya HOM05D004946 ORTHO05D006101 2.0e-38 162.9 156 58.3
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 4.4e-38 161.8 159 60.4
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 5.7e-38 161.4 155 59.4
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 8.2e-37 157.5 161 59.6
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 3.1e-36 155.6 161 59.0
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 1.2e-35 153.7 159 57.2
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 2.0e-35 152.9 142 62.7
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 3.5e-35 152.1 158 57.6
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 3.5e-35 152.1 161 57.8
Gohir.D11G132850 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.5e-35 151.8 161 58.4
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 5.9e-35 151.4 161 58.4
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 1.3e-34 150.2 158 57.6
Gohir.D08G202000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.2e-34 149.4 163 57.7
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 2.9e-34 149.1 159 56.0
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.9e-34 149.1 159 57.2
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 2.9e-34 149.1 155 56.8
Gohir.D05G109701 Gossypium hirsutum HOM05D004946 ORTHO05D006101 3.8e-34 148.7 161 57.8
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 6.5e-34 147.9 157 55.4
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.5e-33 146.7 159 56.6
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.5e-33 146.0 159 56.0
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 4.2e-33 145.2 159 56.0
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 7.2e-33 144.4 159 56.0
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 1.6e-32 143.3 159 57.2
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 2.7e-32 142.5 158 53.8
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 4.7e-32 141.7 158 52.5
Peaxi162Scf00634g00318 Petunia axillaris HOM05D004946 ORTHO05D006101 1.0e-31 140.6 157 53.5
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 1.0e-31 140.6 158 51.3
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 1.8e-31 139.8 158 55.1
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 1.8e-31 139.8 158 55.7
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.0e-31 138.7 161 54.0
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 4.0e-31 138.7 157 54.8
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 1.2e-30 137.1 159 49.7
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.5e-30 136.7 159 54.1
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 2.0e-30 136.3 158 54.4
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 2.0e-30 136.3 159 55.3
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 4.4e-30 135.2 158 55.1
Glyma.13G127700 Glycine max HOM05D004946 ORTHO05D006101 5.7e-30 134.8 108 70.4
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 5.7e-30 134.8 158 55.7
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 7.5e-30 134.4 161 52.2
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 7.5e-30 134.4 161 52.2
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 1.3e-29 133.7 156 51.9
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 1.7e-29 133.3 158 53.2
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 2.8e-29 132.5 162 51.2
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 6.3e-29 131.3 156 51.3
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 8.2e-29 131.0 162 50.6
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 2.4e-28 129.4 157 51.6
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 2.4e-28 129.4 158 51.9
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 3.1e-28 129.0 158 53.2
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 3.1e-28 129.0 158 53.2
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 3.1e-28 129.0 165 51.5
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 3.1e-28 129.0 159 51.6
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 3.1e-28 129.0 158 48.1
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 5.3e-28 128.3 156 51.9
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 7.0e-28 127.9 157 51.0
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 7.0e-28 127.9 165 52.1
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 9.1e-28 127.5 191 45.0
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 1.2e-27 127.1 157 51.0
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 1.2e-27 127.1 157 51.0
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 1.6e-27 126.7 158 53.2
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 2.0e-27 126.3 157 51.0
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 2.0e-27 126.3 155 49.0
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 3.5e-27 125.6 165 51.5
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 4.5e-27 125.2 158 52.5
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 4.5e-27 125.2 157 51.0
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 4.5e-27 125.2 157 49.0
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 1.0e-26 124.0 160 50.0
DCAR_023206 Daucus carota HOM05D004946 ORTHO05D006101 1.7e-26 123.2 157 49.0
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 2.2e-26 122.9 158 51.9
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 2.9e-26 122.5 138 53.6
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 1.5e-25 120.2 156 50.0
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 2.5e-25 119.4 158 51.3
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 5.5e-25 118.2 159 47.8
BcaNung06927 Brassica carinata HOM05D004946 ORTHO05D006101 9.4e-25 117.5 157 52.2
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 2.7e-24 115.9 157 48.4
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 4.7e-24 115.2 156 48.7
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 6.1e-24 114.8 156 48.1
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 8.0e-24 114.4 159 48.4
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 1.0e-23 114.0 155 52.3
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 2.3e-23 112.8 156 48.1
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 4.0e-23 112.1 53 100.0
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 8.8e-23 110.9 155 50.3
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 1.2e-22 110.5 188 44.1
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.5e-22 110.2 165 48.5
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 1.5e-22 110.2 158 46.2
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 1.7e-21 106.7 157 46.5
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 1.8e-20 103.2 155 44.5
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 2.4e-20 102.8 156 46.2
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.4e-20 102.8 137 45.3
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 2.7e-19 99.4 125 48.0
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 5.0e-18 95.1 158 42.4
Gohir.A11G277050 Gossypium hirsutum HOM05D004946 ORTHO05D006101 8.6e-18 94.4 89 65.2
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 1.1e-17 94.0 130 50.8
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 2.3e-15 86.3 156 41.7
CDE06G2845 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 1.7e-13 80.1 87 58.6
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 2.2e-13 79.7 97 45.4
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 1.8e-12 76.6 152 40.1
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 3.1e-12 75.9 132 44.7
Lsat_1_v5_gn_8_63781 Lactuca sativa HOM05D003883 ORTHO05D004605 7.8e-11 71.2 76 50.0
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 3.3e-09 65.9 97 45.4
Zm00001eb201080 Zea mays HOM05D004266 ORTHO05D005151 9.5e-09 64.3 67 50.7
Manes.02G186700 Manihot esculenta HOM05D004266 ORTHO05D005151 2.8e-08 62.8 110 39.1
Gorai.010G131000 Gossypium raimondii HOM05D004266 ORTHO05D005151 8.0e-08 61.2 50 62.0
Zm00001eb091530 Zea mays HOM05D004266 ORTHO05D005151 8.0e-08 61.2 67 50.7
DCAR_015143 Daucus carota HOM05D004946 ORTHO05D006101 1.0e-07 60.8 161 35.4
Duzib211G0120 Durio zibethinus HOM05D004266 ORTHO05D005151 1.4e-07 60.5 50 60.0
Pp3c14_13370 Physcomitrium patens HOM05D004266 ORTHO05D005151 1.4e-07 60.5 170 37.1
Duzib116G0903 Durio zibethinus HOM05D004266 ORTHO05D005151 4.0e-07 58.9 50 60.0
CDE04G2415 Ceratophyllum demersum HOM05D004266 ORTHO05D005151 5.2e-07 58.5 40 75.0
Sc03g0006210 Simmondsia chinensis HOM05D004266 ORTHO05D005151 5.2e-07 58.5 82 48.8
Lalb_Chr02g0141671 Lupinus albus HOM05D004266 ORTHO05D005151 8.9e-07 57.8 67 47.8
Ciclev10000749m.g Citrus clementina HOM05D004266 ORTHO05D005151 1.5e-06 57.0 41 68.3
Dinv36591 Davidia involucrata HOM05D000943 ORTHO05D005151 1.5e-06 57.0 79 46.8
PGR042G2606 Punica granatum HOM05D004266 ORTHO05D005151 1.5e-06 57.0 186 29.0
CSS0023855 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 2.0e-06 56.6 102 42.2
TAR381G0928 Trochodendron aralioides HOM05D000446 ORTHO05D005151 2.0e-06 56.6 40 75.0
Gohir.D05G249100 Gossypium hirsutum HOM05D004266 ORTHO05D005151 2.6e-06 56.2 95 42.1
Os11g0176100 Oryza sativa ssp. japonica HOM05D004266 ORTHO05D005151 2.6e-06 56.2 74 48.6
Thecc.08G196800 Theobroma cacao HOM05D004266 ORTHO05D005151 3.4e-06 55.8 154 33.8
EL10Ac1g01744 Beta vulgaris HOM05D004266 ORTHO05D005151 4.4e-06 55.5 86 44.2
Lsat_1_v5_gn_9_93500 Lactuca sativa HOM05D001433 ORTHO05D013129 4.4e-06 55.5 35 80.0
CiPaw.16G006400 Carya illinoinensis HOM05D004266 ORTHO05D005151 5.8e-06 55.1 105 41.9
MBI02_g11379_MAGBIO Magnolia biondii HOM05D004946 ORTHO05D006101 5.8e-06 55.1 53 56.6
Peaxi162Scf00089g01727 Petunia axillaris HOM05D004266 ORTHO05D005151 5.8e-06 55.1 124 33.1
PGSC0003DMG400012892 Solanum tuberosum HOM05D004266 ORTHO05D005151 7.5e-06 54.7 67 50.7
TAR625G1274 Trochodendron aralioides HOM05D004266 ORTHO05D005151 7.5e-06 54.7 40 72.5
GSVIVG01013670001 Vitis vinifera HOM05D004266 ORTHO05D005151 7.5e-06 54.7 40 67.5
Gohir.A05G247600 Gossypium hirsutum HOM05D004266 ORTHO05D005151 9.8e-06 54.3 155 34.8
Hma1.2p1_0276F.1_g111070 Hydrangea macrophylla HOM05D004266 ORTHO05D005151 9.8e-06 54.3 40 70.0
QL02p035395 Quercus lobata HOM05D004266 ORTHO05D005151 9.8e-06 54.3 66 47.0


User provided reference genes

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