Gene: Zm00001eb091530
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb091530
- Transcript Identifier Zm00001eb091530_T001
- Gene Type Coding gene
- Location 2 : 138533077-138542026 : negative
Gene Family Information
- ID HOM05D004266
- #Genes/#Species 166/96
- Phylogenetic origin
- ID ORTHO05D005151
- #Genes/#Species 163/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Zm00001eb091530_T001
- pid Zm00001eb091530_P001
- uniprot A0A3L6G072
- uniprot A0A1D6F7Y6
- uniprot A0A1D6J1W7
- uniprot A0A1D6EHG6
- uniprot B4FMY5
- uniprot A0A1D6EHG5
- uniprot A0A3L6EX17
- uniprot A0A3L6F4E0
- entrez 100272317
- refseq NP_001140273.1
- refseq NM_001146801.1
- V4_identifier Zm00001d004779
Descriptions
- Description Zm00001e009023
- Description ribosomal protein L7
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006413 | IEA | GOA Database | translational initiation | |
| GO:0060968 | ISO | PLAZA Integrative Orthology | regulation of gene silencing | AT1G71800 |
| GO:0048589 | ISO | PLAZA Integrative Orthology | developmental growth | AT1G71800 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT1G71800 |
| GO:0031123 | ISO | PLAZA Integrative Orthology | RNA 3'-end processing | AT1G71800 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT1G71800 |
| GO:0042868 | ISO | PLAZA Integrative Orthology | antisense RNA metabolic process | AT1G71800 |
| GO:0031124 | IEA | GOA Database | mRNA 3'-end processing | |
| GO:0031124 | IEA | InterPro | mRNA 3'-end processing | |
| GO:0098789 | IBA | GOA Database | pre-mRNA cleavage required for polyadenylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G71800 |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003743 | IEA | GOA Database | translation initiation factor activity | |
| GO:0003729 | IBA | GOA Database | mRNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005847 | IBA | GOA Database | mRNA cleavage and polyadenylation specificity factor complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR038192 | Transcription termination and cleavage factor, C-terminal domain superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR026896 | Transcription termination and cleavage factor, C-terminal domain |
| IPR025742 | Cleavage stimulation factor subunit 2, hinge domain |
| Mapman id | Description |
|---|---|
| 16.3.1.3.2 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Stimulatory Factor (CstF) complex.component CstF64/Rna15 |