Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 0.0e+00 1509.6 752 100.0
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 0.0e+00 1509.6 752 100.0
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 0.0e+00 1266.9 751 83.9
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 0.0e+00 1253.8 755 83.3
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 0.0e+00 1252.7 752 83.8
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 0.0e+00 1183.3 755 79.7
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 0.0e+00 1161.7 753 78.2
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 0.0e+00 1153.3 753 77.8
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 0.0e+00 1143.6 753 76.4
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 0.0e+00 1127.1 750 76.4
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 0.0e+00 1110.9 750 75.6
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 1.5e-285 986.1 746 67.6
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 2.0e-282 975.7 755 66.0
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 3.4e-282 974.9 744 66.1
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 2.2e-281 972.2 757 66.2
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 9.3e-280 966.8 735 66.7
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 6.7e-278 960.7 747 66.7
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 2.5e-277 958.7 756 66.1
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 4.3e-277 958.0 748 66.0
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 5.7e-277 957.6 748 66.0
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 4.8e-276 954.5 755 65.7
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.4e-275 953.0 748 66.7
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.0e-273 946.8 762 64.0
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.3e-273 946.4 752 64.9
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.4e-272 943.0 758 65.2
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.9e-272 942.6 747 66.0
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.4e-270 936.4 728 65.5
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 6.7e-270 934.1 733 66.3
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 2.0e-269 932.6 752 63.8
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 2.0e-269 932.6 745 64.8
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 7.4e-269 930.6 735 65.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 7.4e-269 930.6 784 61.2
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 1.1e-267 926.8 733 66.0
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.0e-266 922.5 756 61.8
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 7.7e-266 920.6 753 62.2
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.1e-264 916.8 762 62.7
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 7.2e-264 914.1 749 64.4
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 9.4e-264 913.7 749 64.4
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.1e-263 912.5 762 62.1
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.4e-262 909.8 755 63.2
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.3e-262 909.1 761 62.5
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 3.0e-262 908.7 745 64.0
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 3.9e-262 908.3 742 62.9
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.5e-261 906.4 760 62.5
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 2.0e-261 906.0 781 60.6
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 3.3e-261 905.2 748 63.6
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 5.7e-261 904.4 745 63.6
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 1.7e-260 902.9 762 61.9
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.7e-260 902.9 746 63.1
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 3.5e-258 895.2 745 63.6
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 3.5e-258 895.2 759 61.1
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 2.2e-257 892.5 813 57.1
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 6.5e-257 891.0 736 62.8
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.5e-256 889.8 753 61.6
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 5.5e-256 887.9 738 62.7
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.6e-255 885.2 751 61.3
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 2.3e-254 882.5 769 59.4
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 3.3e-253 878.6 750 62.0
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 2.8e-252 875.5 738 61.4
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 1.6e-250 869.8 741 60.9
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.1e-248 863.6 741 60.2
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 3.6e-247 858.6 741 60.2
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.8e-243 846.3 743 59.1
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 9.1e-243 844.0 741 59.1
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.3e-241 839.3 736 59.2
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 3.8e-241 838.6 988 48.7
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 3.6e-239 832.0 717 61.8
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 6.1e-239 831.2 749 56.7
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.2e-234 817.0 744 57.7
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 2.0e-234 816.2 744 56.7
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 3.5e-234 815.5 740 56.9
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.3e-233 813.5 751 56.2
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 2.5e-232 809.3 740 57.0
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 7.3e-232 807.7 750 57.5
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.7e-231 805.1 732 56.6
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 8.0e-231 804.3 784 54.8
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 1.4e-230 803.5 657 63.6
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.8e-230 803.1 738 57.3
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.8e-230 803.1 712 58.8
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 9.8e-229 797.3 746 56.8
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 3.7e-228 795.4 741 56.8
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 1.4e-227 793.5 746 55.5
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.4e-227 792.7 746 55.6
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 2.7e-226 789.3 863 50.2
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.6e-223 780.0 774 53.6
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 5.8e-221 771.5 740 55.1
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.3e-220 770.4 738 55.3
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 3.7e-220 768.8 714 56.4
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.4e-219 766.9 957 47.6
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 9.2e-219 764.2 644 61.3
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.9e-216 756.5 744 56.9
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 8.1e-215 751.1 765 51.8
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 4.1e-211 738.8 610 62.8
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.1e-210 736.5 751 52.9
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.3e-209 733.8 757 52.0
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.0e-185 654.4 610 58.4
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.3e-183 647.5 510 65.9
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.4e-179 634.0 726 47.1
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 1.8e-177 627.1 611 56.0
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 6.5e-172 608.6 572 58.2
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.2e-170 604.4 382 77.2
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 2.1e-170 603.6 799 43.1
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 5.1e-169 599.0 753 45.7
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 2.4e-158 563.5 761 44.2
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 6.5e-132 475.7 405 58.5
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.3e-111 408.3 664 38.6
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 2.3e-108 397.5 481 44.9
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.4e-102 378.3 480 43.1
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.9e-100 370.2 485 43.3
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 2.3e-92 344.4 736 34.9
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-91 341.7 336 55.7
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.6e-85 321.6 322 54.7
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 2.8e-82 310.8 1020 27.1
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.1e-81 308.9 265 63.8
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.1e-81 307.4 302 56.0
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 2.1e-69 268.1 187 69.0
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 9.0e-65 252.7 288 52.8
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 3.0e-60 237.7 159 68.6
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 3.0e-60 237.7 237 55.3
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 4.8e-58 230.3 376 39.6
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.5e-56 225.3 171 70.8
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 4.2e-54 217.2 732 26.8
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.1e-52 210.3 297 37.4
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.5e-51 208.8 179 62.6
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 2.5e-51 208.0 156 62.2
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 4.3e-51 207.2 124 79.8
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.0e-47 196.1 186 53.8
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 5.0e-39 167.2 133 69.2
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.0e-23 116.3 111 55.0
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.2e-23 115.2 290 34.8
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 2.9e-23 114.8 64 89.1
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 1.6e-21 109.0 190 33.7
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.1e-21 107.1 105 51.4
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 3.6e-13 81.3 159 31.4
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 6.1e-13 80.5 167 32.9
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 1.8e-12 79.0 44 84.1
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 4.0e-12 77.8 64 54.7
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 6.8e-12 77.0 53 69.8
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 2.0e-11 75.5 120 33.3
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 9.8e-11 73.2 44 79.5
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.3e-10 72.8 53 69.8
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 3.7e-10 71.2 53 67.9
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 8.3e-10 70.1 41 68.3
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 5.4e-09 67.4 41 78.0
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 5.9e-08 63.9 187 28.9
SEGI_07333 Sequoiadendron giganteum HOM05D003873 ORTHO05D004127 3.8e-07 61.2 120 39.2
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 1.1e-06 59.7 35 71.4
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.9e-06 58.9 89 38.2
Sopen05g030800 Solanum pennellii HOM05D003873 ORTHO05D004127 5.5e-06 57.4 111 40.5
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 7.2e-06 57.0 80 40.0
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 7.2e-06 57.0 80 40.0
PGSC0003DMG400011653 Solanum tuberosum HOM05D003873 ORTHO05D004127 7.2e-06 57.0 111 40.5
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 9.5e-06 56.6 76 55.3


User provided reference genes

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