Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 5.8e-175 617.5 312 100.0
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 7.6e-151 537.3 312 86.2
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 9.9e-151 537.0 313 88.2
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.9e-150 535.4 316 87.0
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 7.1e-149 530.8 315 86.7
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.1e-146 523.5 313 85.6
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.6e-145 519.6 314 84.7
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 6.2e-145 517.7 313 85.0
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 5.3e-144 514.6 313 84.0
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 4.5e-143 511.5 315 83.5
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 5.1e-139 498.0 313 81.5
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 5.1e-139 498.0 315 82.2
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.9e-128 461.1 310 75.5
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.4e-125 453.4 312 72.8
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 7.2e-125 451.1 312 75.0
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 3.0e-123 445.7 318 71.7
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 6.7e-123 444.5 318 72.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 6.7e-123 444.5 312 72.8
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 4.3e-122 441.8 311 73.0
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 4.3e-122 441.8 311 73.0
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 4.3e-122 441.8 314 72.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 5.7e-122 441.4 313 73.2
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 2.2e-121 439.5 314 71.3
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 3.7e-121 438.7 318 70.4
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 8.2e-121 437.6 312 70.8
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.4e-120 436.8 312 70.5
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 2.4e-120 436.0 312 71.8
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.1e-120 435.6 313 72.2
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.0e-119 433.0 313 70.6
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.0e-119 433.0 313 70.6
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.4e-119 432.2 314 71.0
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 3.4e-119 432.2 316 70.9
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.5e-119 431.8 312 70.8
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.5e-119 431.8 312 70.8
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 4.5e-119 431.8 312 71.5
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.0e-118 430.6 312 70.8
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.0e-118 430.6 318 71.1
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.3e-118 430.3 314 70.1
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.8e-118 428.7 313 70.3
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 6.5e-118 427.9 310 71.0
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 8.5e-118 427.6 316 69.6
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.5e-118 427.6 316 69.6
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 1.9e-117 426.4 316 69.3
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.2e-116 423.7 313 69.6
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 3.6e-116 422.2 318 68.6
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.4e-115 420.2 314 70.1
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.4e-115 420.2 314 69.4
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.8e-115 419.9 312 69.9
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 8.8e-115 417.5 314 66.6
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.5e-114 416.8 320 67.5
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.6e-114 416.0 312 68.6
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 4.4e-114 415.2 312 68.3
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 4.4e-114 415.2 292 74.0
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 9.7e-114 414.1 312 67.9
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.3e-113 413.7 313 70.3
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.2e-113 412.9 312 68.3
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.8e-113 412.5 312 68.3
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 3.7e-113 412.1 314 68.8
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 6.3e-113 411.4 312 68.3
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 8.2e-113 411.0 313 69.3
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.4e-112 409.5 348 64.1
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.1e-112 409.1 312 67.9
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 5.3e-112 408.3 311 68.8
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 6.9e-112 407.9 315 67.6
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 6.9e-112 407.9 312 67.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.2e-111 407.1 315 67.6
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.6e-111 406.0 353 62.3
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 3.8e-110 402.1 273 76.9
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 5.0e-110 401.7 312 67.3
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 8.5e-110 401.0 314 66.2
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.1e-109 400.6 317 66.2
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.4e-109 400.2 312 67.0
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.2e-109 399.1 317 66.9
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 4.2e-109 398.7 312 67.0
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 9.4e-109 397.5 325 65.2
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.6e-108 396.7 312 67.6
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 6.1e-108 394.8 313 65.8
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 2.3e-107 392.9 313 67.1
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 3.0e-107 392.5 312 65.4
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 6.7e-107 391.3 317 65.3
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 6.7e-107 391.3 314 65.3
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.5e-106 390.2 315 63.5
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.0e-106 389.8 312 65.4
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.0e-106 389.8 312 65.1
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.0e-106 389.8 312 65.4
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.0e-106 389.8 312 65.4
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.0e-106 389.8 312 65.1
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 4.4e-106 388.7 312 64.7
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 7.4e-106 387.9 312 65.1
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 7.4e-106 387.9 318 65.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 9.7e-106 387.5 316 66.1
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.2e-105 386.3 314 65.0
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 6.3e-105 384.8 312 64.4
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.4e-104 382.9 312 65.1
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 8.5e-102 374.4 314 63.4
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.2e-101 372.1 313 63.3
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.6e-100 370.2 224 83.0
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.8e-99 366.7 328 60.4
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 4.0e-99 365.5 338 60.1
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 9.7e-98 360.9 343 57.4
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.7e-97 359.0 249 75.1
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 6.3e-97 358.2 277 69.7
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.9e-94 349.4 339 55.8
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 5.0e-94 348.6 288 63.5
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.2e-93 344.7 279 65.6
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 4.0e-91 339.0 212 79.7
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 8.8e-91 337.8 203 82.3
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.6e-90 336.3 315 56.5
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 4.1e-88 328.9 310 56.8
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 9.1e-88 327.8 312 59.0
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.7e-86 323.6 246 69.1
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 5.0e-86 322.0 317 57.7
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.2e-85 318.2 269 62.5
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 6.1e-84 315.1 313 55.0
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 4.4e-82 308.9 237 68.4
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 6.3e-81 305.1 317 54.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 2.0e-79 300.1 185 80.5
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 2.9e-78 296.2 192 81.2
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.5e-66 257.3 195 68.7
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 6.6e-62 241.9 412 40.8
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.5e-61 240.7 302 47.7
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.0e-59 232.6 191 68.1
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 6.4e-57 225.3 246 56.1
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.7e-55 219.9 385 38.7
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 2.4e-48 196.8 227 48.0
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 2.1e-47 193.7 117 83.8
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 2.6e-42 176.8 244 45.1
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 4.9e-41 172.6 225 45.3
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.4e-40 169.1 313 39.6
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.6e-39 167.5 95 89.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.5e-39 166.4 128 71.9
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.6e-36 156.4 120 64.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 4.8e-36 156.0 96 84.4
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.8e-35 154.1 122 69.7
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 3.8e-33 146.4 206 42.7
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.4e-32 143.7 93 80.6
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.4e-32 143.7 125 60.8
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.4e-32 143.7 125 60.8
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.0e-31 139.0 80 87.5
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 3.3e-29 133.3 194 42.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.3e-29 133.3 80 82.5
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.2e-26 124.8 143 50.3
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.3e-22 111.3 95 65.3
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 5.1e-22 109.4 251 37.1
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.0e-14 85.1 109 48.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 9.0e-11 72.0 61 62.3
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.2e-08 63.2 41 58.5
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.2e-08 63.2 42 64.3
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 7.2e-08 62.4 43 67.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 7.9e-07 58.9 62 54.8
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.3e-06 58.2 57 61.4


User provided reference genes

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