Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.9e-119 432.6 223 100.0
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 2.2e-112 409.1 223 92.4
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 4.6e-110 401.4 223 91.9
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.4e-106 389.8 223 88.3
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.8e-106 389.4 225 88.0
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 2.4e-106 389.0 223 87.0
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 5.3e-106 387.9 223 86.5
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 6.9e-106 387.5 223 87.4
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.0e-104 383.6 223 86.1
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.1e-103 380.2 223 87.0
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 7.9e-102 374.0 221 83.7
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.3e-96 356.7 222 80.6
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.7e-96 356.3 222 80.2
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 6.5e-96 354.4 222 80.2
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 3.8e-80 302.0 346 51.2
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.5e-79 300.1 222 69.8
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 2.7e-78 295.8 223 68.6
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.8e-77 293.1 223 67.3
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 5.2e-77 291.6 223 66.8
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 8.8e-77 290.8 222 66.7
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 5.7e-76 288.1 222 64.9
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.3e-75 287.0 223 65.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.4e-74 283.5 224 65.6
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 3.1e-74 282.3 223 65.5
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.0e-74 281.2 224 65.2
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 7.0e-74 281.2 223 64.6
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.2e-73 280.4 224 66.1
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-73 280.4 224 65.6
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 4.5e-73 278.5 223 65.5
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-73 278.1 224 64.3
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-73 278.1 224 64.3
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-73 278.1 224 64.3
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.0e-72 277.3 222 65.8
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-72 276.2 224 63.8
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-72 276.2 224 63.8
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-72 276.2 224 63.8
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.9e-72 275.8 223 62.8
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-72 275.0 224 63.8
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.6e-72 274.2 224 63.4
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 3.6e-70 268.9 168 83.3
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 4.7e-70 268.5 224 63.4
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 6.1e-70 268.1 223 61.0
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 6.1e-70 268.1 208 67.3
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 6.1e-70 268.1 223 64.6
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 8.0e-70 267.7 223 63.2
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 8.0e-70 267.7 220 61.8
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.8e-69 266.5 223 61.9
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 2.3e-69 266.2 223 64.6
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 5.2e-69 265.0 214 62.6
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 8.9e-69 264.2 227 63.9
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 8.9e-69 264.2 223 61.4
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.2e-68 263.8 213 62.9
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.0e-68 263.1 220 65.5
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.7e-67 260.0 223 61.9
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 2.9e-67 259.2 202 66.8
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 4.9e-67 258.5 224 61.2
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 8.3e-67 257.7 223 61.9
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.1e-66 257.3 224 60.7
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 5.4e-66 255.0 223 62.3
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 9.2e-66 254.2 223 61.0
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.2e-65 253.8 226 61.1
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.2e-65 253.8 223 61.0
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 3.5e-65 252.3 223 61.4
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 1.3e-64 250.4 227 61.7
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.3e-64 250.4 223 61.9
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.7e-64 250.0 226 59.3
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 8.6e-64 247.7 223 60.5
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.1e-63 247.3 222 58.6
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-63 247.3 223 58.3
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.9e-63 246.5 221 61.5
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 7.3e-63 244.6 223 60.1
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 9.5e-63 244.2 222 56.8
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.0e-61 240.7 222 57.7
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.0e-61 240.7 222 57.7
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.4e-61 240.4 221 58.8
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.3e-61 239.6 223 58.3
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 2.3e-61 239.6 223 60.1
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 4.0e-61 238.8 218 57.8
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.2e-60 237.3 253 53.4
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-60 236.5 219 58.4
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 5.8e-60 235.0 224 55.8
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 7.5e-60 234.6 225 58.2
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 7.5e-60 234.6 188 67.0
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.7e-59 233.4 202 63.4
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 8.3e-59 231.1 227 58.6
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-58 230.7 224 55.8
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.9e-58 229.9 224 55.4
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 2.4e-58 229.6 224 55.4
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 3.2e-58 229.2 224 55.4
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 4.1e-58 228.8 235 56.2
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 7.0e-58 228.0 239 56.1
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 1.2e-57 227.3 234 50.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.6e-57 226.9 224 55.4
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.6e-57 226.9 224 54.9
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.5e-57 225.7 222 54.1
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.5e-57 225.7 222 54.1
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 4.6e-57 225.3 222 54.1
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 4.6e-57 225.3 200 62.5
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 6.0e-57 224.9 228 56.1
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.3e-56 223.8 206 60.2
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.7e-56 223.4 222 53.6
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 2.3e-56 223.0 232 55.6
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 3.0e-56 222.6 222 53.2
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 6.6e-56 221.5 209 58.9
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 8.6e-56 221.1 268 49.6
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 8.6e-56 221.1 234 54.7
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.5e-55 220.3 208 59.1
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.5e-55 220.3 196 61.7
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.5e-55 219.5 198 62.6
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 3.3e-55 219.2 260 51.9
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 5.6e-55 218.4 230 52.2
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 9.5e-55 217.6 238 52.5
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.5e-55 217.6 170 66.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.8e-54 216.1 186 59.1
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 2.8e-54 216.1 259 51.4
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 3.6e-54 215.7 206 60.7
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 6.2e-54 214.9 181 64.6
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.4e-53 213.8 280 48.6
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 9.8e-52 207.6 199 58.8
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.7e-48 196.8 257 47.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 3.0e-48 196.1 219 54.3
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.6e-46 190.3 193 58.5
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.1e-45 187.6 198 54.5
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-45 186.8 151 64.2
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-44 183.7 159 61.0
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 4.9e-43 178.7 151 64.2
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.2e-38 164.1 143 65.7
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.1e-38 163.3 138 65.2
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.9e-36 154.5 147 59.2
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 6.4e-35 151.8 179 54.2
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 8.4e-35 151.4 152 54.6
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.1e-34 151.0 139 59.0
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 6.6e-32 141.7 100 77.0
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 3.3e-31 139.4 128 60.2
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 8.1e-30 134.8 135 57.0
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 4.0e-29 132.5 192 40.6
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 6.4e-27 125.2 187 41.2
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 9.3e-26 121.3 94 62.8
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 9.3e-26 121.3 132 53.8
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.1e-25 120.2 202 37.6
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 2.1e-25 120.2 205 38.0
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 5.3e-21 105.5 93 59.1
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 3.8e-19 99.4 94 55.3
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.4e-18 96.7 154 43.5
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 4.6e-17 92.4 95 53.7
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 8.7e-16 88.2 95 51.6
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.5e-15 86.7 58 63.8
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.2e-12 77.8 166 33.1
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.5e-12 77.4 50 70.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.0e-11 74.7 60 61.7
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 2.9e-11 73.2 93 52.7
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 8.7e-08 61.6 189 29.1


User provided reference genes

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