Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10414_v3 Cicer arietinum L. HOM05D002164 ORTHO05D002267 4.7e-58 227.6 115 100.0
TPR.G13383 Trifolium pratense HOM05D002164 ORTHO05D002267 7.9e-21 104.0 81 69.1
arahy.Tifrunner.gnm1.ann1.WEUQ1L Arachis hypogaea HOM05D002164 ORTHO05D002267 2.9e-15 85.5 79 57.0
Psat6g171080 Pisum sativum HOM05D002164 ORTHO05D002267 6.5e-15 84.3 78 64.1
Gohir.A07G043900 Gossypium hirsutum HOM05D002164 ORTHO05D002267 2.5e-14 82.4 80 57.5
Gorai.001G051500 Gossypium raimondii HOM05D002164 ORTHO05D002267 2.5e-14 82.4 80 57.5
Glyma.10G118800 Glycine max HOM05D002164 ORTHO05D002267 3.2e-14 82.0 79 59.5
Medtr1g090220 Medicago truncatula HOM05D000185 ORTHO05D002267 3.2e-14 82.0 86 48.8
Eucgr.A02925 Eucalyptus grandis HOM05D002164 ORTHO05D002267 4.2e-14 81.6 79 55.7
Cpa.g.sc13.243 Carica papaya HOM05D002164 ORTHO05D002267 5.5e-14 81.3 80 55.0
Hma1.2p1_0502F.1_g167760 Hydrangea macrophylla HOM05D002164 ORTHO05D002267 7.2e-14 80.9 79 54.4
Nn6g33824 Nelumbo nucifera HOM05D002164 ORTHO05D002267 9.4e-14 80.5 94 53.2
CSS0044740 Camellia sinensis var. sinensis HOM05D002164 ORTHO05D002267 1.2e-13 80.1 79 53.2
Duzib068G0769 Durio zibethinus HOM05D002164 ORTHO05D002267 1.2e-13 80.1 79 55.7
Gohir.D03G105800 Gossypium hirsutum HOM05D002164 ORTHO05D002267 1.2e-13 80.1 79 55.7
Gorai.003G112000 Gossypium raimondii HOM05D002164 ORTHO05D002267 1.2e-13 80.1 79 55.7
Duzib084G1318 Durio zibethinus HOM05D002164 ORTHO05D002267 1.6e-13 79.7 80 55.0
Glyma.20G069800 Glycine max HOM05D002164 ORTHO05D002267 2.1e-13 79.3 79 57.0
Gohir.D07G048300 Gossypium hirsutum HOM05D002164 ORTHO05D002267 2.7e-13 79.0 80 55.0
CSS0017888 Camellia sinensis var. sinensis HOM05D002164 ORTHO05D002267 3.6e-13 78.6 79 51.9
CSS0021488 Camellia sinensis var. sinensis HOM05D002164 ORTHO05D002267 3.6e-13 78.6 79 51.9
Dinv12863 Davidia involucrata HOM05D002164 ORTHO05D002267 3.6e-13 78.6 92 51.1
Manes.06G130800 Manihot esculenta HOM05D002164 ORTHO05D002267 3.6e-13 78.6 80 55.0
GSVIVG01013898001 Vitis vinifera HOM05D002164 ORTHO05D002267 6.1e-13 77.8 79 53.2
HanXRQChr08g0222791 Helianthus annuus HOM05D002164 ORTHO05D002267 7.9e-13 77.4 79 54.4
Nn6g33823 Nelumbo nucifera HOM05D002164 ORTHO05D002267 7.9e-13 77.4 86 55.8
Solyc03g093640.4 Solanum lycopersicum HOM05D002164 ORTHO05D002267 7.9e-13 77.4 86 51.2
Sopen03g024510 Solanum pennellii HOM05D002164 ORTHO05D002267 7.9e-13 77.4 86 51.2
Actinidia13615 Actinidia chinensis HOM05D002164 ORTHO05D002267 1.4e-12 76.6 86 51.2
Lj5g0022168 Lotus japonicus HOM05D002164 ORTHO05D002267 1.8e-12 76.3 79 53.2
Actinidia31665 Actinidia chinensis HOM05D002164 ORTHO05D002267 2.3e-12 75.9 86 51.2
Dinv32353 Davidia involucrata HOM05D002164 ORTHO05D002267 2.3e-12 75.9 79 51.9
Manes.14G039200 Manihot esculenta HOM05D002164 ORTHO05D002267 2.3e-12 75.9 80 53.8
Nn1g00846 Nelumbo nucifera HOM05D002164 ORTHO05D002267 2.3e-12 75.9 86 51.2
Rhsim03G0160600 Rhododendron simsii HOM05D002164 ORTHO05D002267 3.0e-12 75.5 86 50.0
THA.LOC104811537 Tarenaya hassleriana HOM05D002164 ORTHO05D002267 3.0e-12 75.5 80 51.2
CAN.G388.41 Capsicum annuum HOM05D002164 ORTHO05D002267 3.9e-12 75.1 86 50.0
TWI23G0847 Tripterygium wilfordii HOM05D002164 ORTHO05D002267 3.9e-12 75.1 79 50.6
Ciclev10004955m.g Citrus clementina HOM05D002164 ORTHO05D002267 5.1e-12 74.7 80 52.5
Cc02_g04790 Coffea canephora HOM05D002164 ORTHO05D002267 5.1e-12 74.7 79 51.9
Lalb_Chr03g0036531 Lupinus albus HOM05D002164 ORTHO05D002267 5.1e-12 74.7 79 54.4
Nitab4.5_0000600g0150 Nicotiana tabacum HOM05D002164 ORTHO05D002267 6.7e-12 74.3 90 50.0
AL8G25510 Arabidopsis lyrata HOM05D002164 ORTHO05D002267 8.8e-12 73.9 80 48.8
BcaB08g35482 Brassica carinata HOM05D002164 ORTHO05D002267 8.8e-12 73.9 81 49.4
CARHR256790 Cardamine hirsuta HOM05D002164 ORTHO05D002267 8.8e-12 73.9 80 50.0
PGR042G2377 Punica granatum HOM05D002164 ORTHO05D002267 8.8e-12 73.9 79 51.9
Atru.chr1.1554 Acer truncatum HOM05D002164 ORTHO05D002267 1.1e-11 73.6 79 49.4
arahy.Tifrunner.gnm1.ann1.5M2IN1 Arachis hypogaea HOM05D002164 ORTHO05D002267 1.1e-11 73.6 64 59.4
ClCG07G017040 Citrullus lanatus HOM05D002164 ORTHO05D002267 1.1e-11 73.6 79 49.4
Sp6g13430 Schrenkiella parvula HOM05D002164 ORTHO05D002267 1.1e-11 73.6 80 48.8
Aa31LG3G7750 Aethionema arabicum HOM05D002164 ORTHO05D002267 1.5e-11 73.2 80 50.0
AT5G51230 Arabidopsis thaliana HOM05D002164 ORTHO05D002267 2.0e-11 72.8 80 47.5
SGA_v2.0_scaffold136G34993 Striga asiatica HOM05D002164 ORTHO05D002267 2.5e-11 72.4 86 47.7
A02p12420 Brassica napus HOM05D002164 ORTHO05D002267 3.3e-11 72.0 79 49.4
BraA02t06306Z Brassica rapa HOM05D002164 ORTHO05D002267 3.3e-11 72.0 79 49.4
Oeu044193.4 Olea europaea HOM05D002164 ORTHO05D002267 3.3e-11 72.0 86 48.8
Phvul.007G241500 Phaseolus vulgaris HOM05D002164 ORTHO05D002267 3.3e-11 72.0 79 54.4
Sed0010479 Sechium edule HOM05D002164 ORTHO05D002267 3.3e-11 72.0 79 48.1
Migut.F01204 Erythranthe guttata HOM05D002164 ORTHO05D002267 4.3e-11 71.6 86 47.7
BcaC04g20712 Brassica carinata HOM05D002164 ORTHO05D002267 5.7e-11 71.2 80 48.8
C09p39990 Brassica napus HOM05D002164 ORTHO05D002267 5.7e-11 71.2 80 48.8
BolC9t56896H Brassica oleracea HOM05D002164 ORTHO05D002267 5.7e-11 71.2 80 48.8
CsaV3_4G004260 Cucumis sativus L. HOM05D002164 ORTHO05D002267 5.7e-11 71.2 79 48.1
Carub.0008s1127 Capsella rubella HOM05D002164 ORTHO05D002267 7.4e-11 70.9 80 47.5
A10p09010 Brassica napus HOM05D002164 ORTHO05D002267 9.7e-11 70.5 81 50.6
BraA10t42985Z Brassica rapa HOM05D002164 ORTHO05D002267 9.7e-11 70.5 81 50.6
TAR375G1034 Trochodendron aralioides HOM05D002164 ORTHO05D002267 9.7e-11 70.5 86 48.8
C02p20530 Brassica napus HOM05D002164 ORTHO05D002267 1.3e-10 70.1 79 48.1
HPP92_008898 Vanilla planifolia HOM05D002164 ORTHO05D002267 2.2e-10 69.3 51 66.7
QL09p027767 Quercus lobata HOM05D002164 ORTHO05D002267 2.8e-10 68.9 56 62.5
SalBow6G1922 Salvia bowleyana HOM05D002164 ORTHO05D002267 2.8e-10 68.9 86 45.3
MSTRG.8403 Avicennia marina HOM05D002164 ORTHO05D002267 3.7e-10 68.6 56 60.7
BcaC03g14618 Brassica carinata HOM05D002164 ORTHO05D002267 3.7e-10 68.6 80 48.8
Thecc.03G147700 Theobroma cacao HOM05D002164 ORTHO05D002267 3.7e-10 68.6 55 63.6
Lsat_1_v5_gn_2_127041 Lactuca sativa HOM05D002164 ORTHO05D002267 4.8e-10 68.2 79 48.1
Haze_22210 Corylus avellana HOM05D002164 ORTHO05D002267 6.3e-10 67.8 56 58.9
Gohir.A03G060200 Gossypium hirsutum HOM05D002164 ORTHO05D002267 6.3e-10 67.8 55 61.8
HanXRQChr04g0111961 Helianthus annuus HOM05D002164 ORTHO05D002267 6.3e-10 67.8 52 65.4
Lsat_1_v5_gn_8_9821 Lactuca sativa HOM05D002164 ORTHO05D002267 6.3e-10 67.8 56 62.5
CAN.G247.10 Capsicum annuum HOM05D002164 ORTHO05D002267 8.2e-10 67.4 86 46.5
Thhalv10012944m.g Eutrema salsugineum HOM05D002164 ORTHO05D002267 8.2e-10 67.4 82 46.3
Hund04563 Selenicereus undatus HOM05D002164 ORTHO05D002267 8.2e-10 67.4 52 63.5
ECA233G4451 Erigeron canadensis HOM05D002164 ORTHO05D002267 1.1e-09 67.0 56 62.5
Atru.chr1.1562 Acer truncatum HOM05D002164 ORTHO05D002267 1.4e-09 66.6 80 48.8
BcaB05g24015 Brassica carinata HOM05D002164 ORTHO05D002267 1.4e-09 66.6 80 47.5
MELO3C017639.2 Cucumis melo HOM05D002164 ORTHO05D002267 1.4e-09 66.6 79 48.1
BolC2t08189H Brassica oleracea HOM05D002164 ORTHO05D002267 1.8e-09 66.2 79 46.8
ECA232G2610 Erigeron canadensis HOM05D002164 ORTHO05D002267 1.8e-09 66.2 83 44.6
Prupe.4G152500 Prunus persica HOM05D002164 ORTHO05D002267 1.8e-09 66.2 56 57.1
CiPaw.07G184300 Carya illinoinensis HOM05D002164 ORTHO05D002267 2.4e-09 65.9 56 57.1
MD11G1274700 Malus domestica HOM05D002164 ORTHO05D002267 2.4e-09 65.9 52 59.6
MD03G1252500 Malus domestica HOM05D002164 ORTHO05D002267 3.1e-09 65.5 56 57.1
PSO170G4693 Papaver somniferum HOM05D002164 ORTHO05D002267 3.1e-09 65.5 87 44.8
Prupe.5G060700 Prunus persica HOM05D002164 ORTHO05D002267 3.1e-09 65.5 53 62.3
Sed0004355 Sechium edule HOM05D002164 ORTHO05D002267 3.1e-09 65.5 79 43.0
CANSAT56G4389 Cannabis sativa HOM05D002164 ORTHO05D002267 4.1e-09 65.1 52 57.7
Duzib205G1697 Durio zibethinus HOM05D002164 ORTHO05D002267 4.1e-09 65.1 50 64.0
Oeu045399.1 Olea europaea HOM05D002164 ORTHO05D002267 4.1e-09 65.1 85 45.9
PSO063G6812 Papaver somniferum HOM05D002164 ORTHO05D002267 4.1e-09 65.1 87 44.8
AUR62002245 Chenopodium quinoa HOM05D002164 ORTHO05D002267 5.3e-09 64.7 66 51.5
Sabra01G0057500 Salix brachista HOM05D002164 ORTHO05D002267 5.3e-09 64.7 86 44.2
RcHm_v2.0_Chr5g0028591 Rosa chinensis HOM05D002164 ORTHO05D002267 6.9e-09 64.3 52 55.8
CiPaw.08G042100 Carya illinoinensis HOM05D002164 ORTHO05D002267 9.1e-09 63.9 56 57.1
CiPaw.12G048300 Carya illinoinensis HOM05D002164 ORTHO05D002267 9.1e-09 63.9 52 61.5
Lalb_Chr09g0324251 Lupinus albus HOM05D002164 ORTHO05D002267 1.5e-08 63.2 50 62.0
ATR0057G104 Amborella trichopoda HOM05D002164 ORTHO05D002267 2.6e-08 62.4 49 61.2
Peaxi162Scf01305g00028 Petunia axillaris HOM05D002164 ORTHO05D002267 2.6e-08 62.4 62 54.8
Phvul.002G000500 Phaseolus vulgaris HOM05D002164 ORTHO05D002267 2.6e-08 62.4 50 62.0
Potri.003G081400 Populus trichocarpa HOM05D002164 ORTHO05D002267 2.6e-08 62.4 53 58.5
Sabra03G0052400 Salix brachista HOM05D002164 ORTHO05D002267 2.6e-08 62.4 53 58.5
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 2.6e-08 62.4 50 62.0
Aqoxy3G02713 Aquilegia oxysepala HOM05D002164 ORTHO05D002267 3.4e-08 62.0 86 44.2
Ca_24601_v3 Cicer arietinum L. HOM05D002164 ORTHO05D002267 3.4e-08 62.0 50 60.0
FAN16G0980 Fragaria x ananassa HOM05D002164 ORTHO05D002267 3.4e-08 62.0 54 55.6
Glyma.11G036800 Glycine max HOM05D002164 ORTHO05D002267 3.4e-08 62.0 50 60.0
Manes.01G086000 Manihot esculenta HOM05D002164 ORTHO05D002267 3.4e-08 62.0 51 60.8
Potri.001G080200 Populus trichocarpa HOM05D002164 ORTHO05D002267 3.4e-08 62.0 85 44.7
Zm00001eb309520 Zea mays HOM05D002164 ORTHO05D002267 3.4e-08 62.0 86 43.0
DCAR_018073 Daucus carota HOM05D002164 ORTHO05D002267 4.5e-08 61.6 56 57.1
FAN11G0474 Fragaria x ananassa HOM05D002164 ORTHO05D002267 4.5e-08 61.6 54 55.6
Glyma.10G193800 Glycine max HOM05D002164 ORTHO05D002267 5.9e-08 61.2 72 44.4
QL12p009231 Quercus lobata HOM05D002164 ORTHO05D002267 5.9e-08 61.2 50 60.0
SEGI_16877 Sequoiadendron giganteum HOM05D002164 ORTHO05D002267 5.9e-08 61.2 64 50.0
Glyma.01G206000 Glycine max HOM05D002164 ORTHO05D002267 7.7e-08 60.8 50 58.0
PGR042G0154 Punica granatum HOM05D002164 ORTHO05D002267 7.7e-08 60.8 50 62.0
Hund14507 Selenicereus undatus HOM05D002164 ORTHO05D002267 7.7e-08 60.8 49 61.2
Medtr5g013150 Medicago truncatula HOM05D002164 ORTHO05D002267 1.0e-07 60.5 50 56.0
Psat0ss6263g0320 Pisum sativum HOM05D002164 ORTHO05D002267 1.0e-07 60.5 65 55.4
TPR.G17973 Trifolium pratense HOM05D002164 ORTHO05D002267 1.0e-07 60.5 50 58.0
THA.LOC104807917 Tarenaya hassleriana HOM05D002164 ORTHO05D002267 1.3e-07 60.1 67 49.3
GSVIVG01004791001 Vitis vinifera HOM05D002164 ORTHO05D002267 1.3e-07 60.1 50 60.0
Nitab4.5_0007599g0010 Nicotiana tabacum HOM05D002164 ORTHO05D002267 1.7e-07 59.7 81 44.4
FvH4_3g17191 Fragaria vesca HOM05D002164 ORTHO05D002267 2.2e-07 59.3 54 53.7
FAN25G2331 Fragaria x ananassa HOM05D002164 ORTHO05D002267 2.2e-07 59.3 54 53.7
Gohir.A03G005800 Gossypium hirsutum HOM05D002164 ORTHO05D002267 2.2e-07 59.3 51 62.7
HanXRQChr14g0461141 Helianthus annuus HOM05D002164 ORTHO05D002267 2.2e-07 59.3 92 39.1
Os09g0306800 Oryza sativa ssp. japonica HOM05D002164 ORTHO05D002267 2.2e-07 59.3 52 51.9
Potri.003G150450 Populus trichocarpa HOM05D002164 ORTHO05D002267 2.2e-07 59.3 103 38.8
FAN21G1161 Fragaria x ananassa HOM05D000061 ORTHO05D002267 2.9e-07 58.9 53 54.7
Sc22g0001070 Simmondsia chinensis HOM05D002164 ORTHO05D002267 2.9e-07 58.9 50 56.0
Thecc.03G244300 Theobroma cacao HOM05D002164 ORTHO05D002267 2.9e-07 58.9 51 62.7
Nitab4.5_0002153g0020 Nicotiana tabacum HOM05D002164 ORTHO05D002267 3.8e-07 58.5 89 42.7
AUR62000472 Chenopodium quinoa HOM05D002164 ORTHO05D002267 5.0e-07 58.2 55 50.9
AUR62015456 Chenopodium quinoa HOM05D002164 ORTHO05D002267 5.0e-07 58.2 99 38.4
Duzib068G0701 Durio zibethinus HOM05D002164 ORTHO05D002267 5.0e-07 58.2 51 58.8
Duzib205G1173 Durio zibethinus HOM05D002164 ORTHO05D002267 5.0e-07 58.2 51 58.8
Nitab4.5_0001472g0030 Nicotiana tabacum HOM05D002164 ORTHO05D002267 5.0e-07 58.2 67 50.7
AUR62006814 Chenopodium quinoa HOM05D002164 ORTHO05D002267 6.5e-07 57.8 50 56.0
FAN04G1691 Fragaria x ananassa HOM05D002164 ORTHO05D002267 6.5e-07 57.8 53 54.7
FAN08G0712 Fragaria x ananassa HOM05D002164 ORTHO05D002267 6.5e-07 57.8 53 54.7
FAN13G2007 Fragaria x ananassa HOM05D002164 ORTHO05D002267 6.5e-07 57.8 53 54.7
MD06G1050700 Malus domestica HOM05D002164 ORTHO05D002267 6.5e-07 57.8 53 60.4
vmacro06839 Vaccinium macrocarpon HOM05D002164 ORTHO05D002267 6.5e-07 57.8 67 49.3
Ah.06g190670 Amaranthus hybridus HOM05D002164 ORTHO05D002267 8.5e-07 57.4 55 50.9
Lj2g0003297 Lotus japonicus HOM05D002164 ORTHO05D002267 8.5e-07 57.4 48 58.3
CANSAT21G2380 Cannabis sativa HOM05D002164 ORTHO05D002267 1.1e-06 57.0 51 56.9
Haze_07964 Corylus avellana HOM05D002164 ORTHO05D002267 1.1e-06 57.0 51 56.9
DCAR_009458 Daucus carota HOM05D002164 ORTHO05D002267 1.1e-06 57.0 62 46.8
EL10Ac3g05881 Beta vulgaris HOM05D002164 ORTHO05D002267 1.4e-06 56.6 49 59.2
Mapoly0092s0032 Marchantia polymorpha HOM05D002164 ORTHO05D002267 1.4e-06 56.6 49 55.1
COL.COLO4_10019 Corchorus olitorius HOM05D002164 ORTHO05D002267 1.9e-06 56.2 51 56.9
FvH4_5g19940 Fragaria vesca HOM05D002164 ORTHO05D002267 1.9e-06 56.2 53 52.8
FAN18G3698 Fragaria x ananassa HOM05D002164 ORTHO05D002267 1.9e-06 56.2 53 52.8
RcHm_v2.0_Chr7g0204761 Rosa chinensis HOM05D002164 ORTHO05D002267 1.9e-06 56.2 53 54.7
Zm00001eb057460 Zea mays HOM05D002164 ORTHO05D002267 1.9e-06 56.2 52 51.9
arahy.Tifrunner.gnm1.ann1.78WKC1 Arachis hypogaea HOM05D002164 ORTHO05D002267 2.5e-06 55.8 50 56.0
arahy.Tifrunner.gnm1.ann1.D8BFI7 Arachis hypogaea HOM05D002164 ORTHO05D002267 2.5e-06 55.8 50 56.0
Gohir.D03G166700 Gossypium hirsutum HOM05D002164 ORTHO05D002267 2.5e-06 55.8 51 58.8
Gorai.003G176300 Gossypium raimondii HOM05D002164 ORTHO05D002267 2.5e-06 55.8 51 58.8
TWI60G0929 Tripterygium wilfordii HOM05D002164 ORTHO05D002267 3.2e-06 55.5 50 54.0
EL10Ac4g09555 Beta vulgaris HOM05D002164 ORTHO05D002267 4.2e-06 55.1 50 52.0
CsaV3_3G002420 Cucumis sativus L. HOM05D002164 ORTHO05D002267 5.5e-06 54.7 49 57.1
Psat7g010240 Pisum sativum HOM05D002164 ORTHO05D002267 5.5e-06 54.7 50 52.0
Ah.07g207490 Amaranthus hybridus HOM05D002164 ORTHO05D002267 7.2e-06 54.3 60 48.3
SHI14108 Sapria himalayana HOM05D002164 ORTHO05D000004 7.2e-06 54.3 61 49.2
MELO3C013911.2 Cucumis melo HOM05D002164 ORTHO05D002267 9.4e-06 53.9 49 57.1
Sc07g0009130 Simmondsia chinensis HOM05D002164 ORTHO05D002267 9.4e-06 53.9 50 50.0


User provided reference genes

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