Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06492_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 9.5e-293 1009.6 568 100.0
Medtr5g098850 Medicago truncatula HOM05D006964 ORTHO05D008861 1.9e-248 862.4 574 79.3
TPR.G35899 Trifolium pratense HOM05D006964 ORTHO05D008861 1.2e-247 859.8 577 83.4
Glyma.14G003100 Glycine max HOM05D006964 ORTHO05D008861 1.6e-231 806.2 574 77.7
LjContig00081g0000792 Lotus japonicus HOM05D006964 ORTHO05D008861 3.8e-225 785.0 587 79.7
Psat2g001680 Pisum sativum HOM05D006964 ORTHO05D008861 2.5e-224 782.3 464 87.3
Lalb_Chr10g0101591 Lupinus albus HOM05D006964 ORTHO05D008861 2.3e-222 775.8 564 72.7
arahy.Tifrunner.gnm1.ann1.EIVX2Z Arachis hypogaea HOM05D006964 ORTHO05D008861 3.0e-222 775.4 573 74.3
arahy.Tifrunner.gnm1.ann1.3RSR9Y Arachis hypogaea HOM05D006964 ORTHO05D008861 2.6e-221 772.3 575 73.6
Phvul.008G290000 Phaseolus vulgaris HOM05D006964 ORTHO05D008861 5.9e-218 761.1 574 76.1
Gorai.004G062600 Gossypium raimondii HOM05D006964 ORTHO05D008861 2.6e-213 745.7 579 69.9
Gohir.D08G060500 Gossypium hirsutum HOM05D006964 ORTHO05D008861 1.3e-212 743.4 579 69.8
ClCG07G011010 Citrullus lanatus HOM05D006964 ORTHO05D008861 4.8e-212 741.5 571 68.5
COL.COLO4_20003 Corchorus olitorius HOM05D006964 ORTHO05D008861 4.1e-211 738.4 582 67.2
Gohir.A08G050700 Gossypium hirsutum HOM05D006964 ORTHO05D008861 5.3e-211 738.0 583 69.3
Cfa016256 Carpinus fangiana HOM05D006964 ORTHO05D008861 7.2e-208 727.6 580 69.5
Haze_00006 Corylus avellana HOM05D006964 ORTHO05D008861 7.2e-208 727.6 582 69.6
Thecc.01G176000 Theobroma cacao HOM05D006964 ORTHO05D008861 7.2e-208 727.6 589 69.9
Sed0000140 Sechium edule HOM05D006964 ORTHO05D008861 9.4e-208 727.2 570 70.2
PGR031G2089 Punica granatum HOM05D006964 ORTHO05D008861 1.5e-205 719.9 577 68.6
Ciclev10011398m.g Citrus clementina HOM05D006964 ORTHO05D008861 1.1e-203 713.8 583 68.4
Atru.chr8.1035 Acer truncatum HOM05D006964 ORTHO05D008861 2.2e-201 706.1 588 64.8
Eucgr.A00951 Eucalyptus grandis HOM05D006964 ORTHO05D008861 2.2e-201 706.1 602 68.9
QL04p064780 Quercus lobata HOM05D006964 ORTHO05D008861 6.5e-201 704.5 602 67.4
QL04p064712 Quercus lobata HOM05D006964 ORTHO05D008861 1.1e-200 703.7 602 67.8
TAR464G0001 Trochodendron aralioides HOM05D006964 ORTHO05D008861 4.2e-200 701.8 599 65.1
Potri.011G023800 Populus trichocarpa HOM05D006964 ORTHO05D008861 2.1e-199 699.5 565 67.3
Manes.16G000700 Manihot esculenta HOM05D006964 ORTHO05D008861 3.6e-199 698.7 576 64.6
Nn7g38387 Nelumbo nucifera HOM05D006964 ORTHO05D008861 1.8e-198 696.4 602 63.5
Nitab4.5_0000660g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 4.0e-198 695.3 568 65.3
Sabra11G0014800 Salix brachista HOM05D006964 ORTHO05D008861 5.2e-198 694.9 564 69.7
CAN.G843.21 Capsicum annuum HOM05D006964 ORTHO05D008861 9.8e-197 690.6 600 61.7
Nitab4.5_0000663g0200 Nicotiana tabacum HOM05D006964 ORTHO05D008861 9.8e-197 690.6 613 62.3
PGSC0003DMG400014180 Solanum tuberosum HOM05D006964 ORTHO05D008861 2.2e-196 689.5 589 64.5
Nitab4.5_0004302g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.1e-195 687.2 567 64.7
Cpa.g.sc332.3 Carica papaya HOM05D006964 ORTHO05D008861 3.1e-195 685.6 572 64.3
Sopen03g037220 Solanum pennellii HOM05D006964 ORTHO05D008861 9.1e-195 684.1 589 62.0
Rhsim02G0171800 Rhododendron simsii HOM05D006964 ORTHO05D008861 1.6e-194 683.3 587 68.0
vmacro11021 Vaccinium macrocarpon HOM05D006964 ORTHO05D008861 2.7e-194 682.6 594 68.0
CiPaw.05G264600 Carya illinoinensis HOM05D006964 ORTHO05D008861 1.0e-193 680.6 586 65.0
Solyc03g118320.1 Solanum lycopersicum HOM05D006964 ORTHO05D008861 1.0e-193 680.6 589 61.8
Hma1.2p1_0391F.1_g142860 Hydrangea macrophylla HOM05D006964 ORTHO05D008861 3.8e-193 678.7 604 62.3
Aqoxy7G03560 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 3.3e-192 675.6 606 62.9
SHI28197 Sapria himalayana HOM05D006964 ORTHO05D008861 9.5e-192 674.1 569 63.4
CsaV3_4G007230 Cucumis sativus L. HOM05D006964 ORTHO05D008861 1.6e-191 673.3 437 77.6
Peaxi162Scf00314g00515 Petunia axillaris HOM05D006964 ORTHO05D008861 1.4e-190 670.2 566 63.8
RcHm_v2.0_Chr7g0233321 Rosa chinensis HOM05D006964 ORTHO05D008861 1.8e-190 669.8 568 68.0
Lj1A623T74 Lonicera japonica HOM05D006964 ORTHO05D008861 2.6e-189 666.0 589 62.3
Oeu061991.1 Olea europaea HOM05D006964 ORTHO05D008861 2.6e-189 666.0 556 67.6
CARHR026810 Cardamine hirsuta HOM05D006964 ORTHO05D008861 3.7e-188 662.1 559 65.7
MBI18_g18636_MAGBIO Magnolia biondii HOM05D006964 ORTHO05D008861 3.7e-188 662.1 564 64.4
AL1G40630 Arabidopsis lyrata HOM05D006964 ORTHO05D008861 5.4e-187 658.3 558 65.8
AT1G24290 Arabidopsis thaliana HOM05D006964 ORTHO05D008861 5.4e-187 658.3 559 63.1
FvH4_5g33930 Fragaria vesca HOM05D006964 ORTHO05D008861 7.0e-187 657.9 571 68.7
Carub.0001s2577 Capsella rubella HOM05D006964 ORTHO05D008861 2.7e-186 656.0 566 62.5
MD03G1299000 Malus domestica HOM05D006964 ORTHO05D008861 5.9e-186 654.8 600 61.2
Aa31LG7G9960 Aethionema arabicum HOM05D006964 ORTHO05D008861 1.0e-185 654.1 560 62.0
FAN18G1087 Fragaria x ananassa HOM05D006964 ORTHO05D008861 5.0e-185 651.7 560 65.9
FAN08G0714 Fragaria x ananassa HOM05D006964 ORTHO05D008861 6.6e-185 651.4 560 65.7
THA.LOC104827506 Tarenaya hassleriana HOM05D006964 ORTHO05D008861 6.6e-185 651.4 567 63.3
Sc07g0001890 Simmondsia chinensis HOM05D006964 ORTHO05D008861 1.6e-183 646.7 580 63.4
Thhalv10009719m.g Eutrema salsugineum HOM05D006964 ORTHO05D008861 2.1e-183 646.4 559 62.6
BcaC06g35275 Brassica carinata HOM05D006964 ORTHO05D008861 2.8e-183 646.0 560 62.7
BolC7t42303H Brassica oleracea HOM05D006964 ORTHO05D008861 2.8e-183 646.0 560 62.7
Sp1g23470 Schrenkiella parvula HOM05D006964 ORTHO05D008861 8.0e-183 644.4 560 62.3
Lsat_1_v5_gn_1_40040 Lactuca sativa HOM05D006964 ORTHO05D008861 1.4e-182 643.7 566 62.4
BraA07t28989Z Brassica rapa HOM05D006964 ORTHO05D008861 3.0e-182 642.5 569 62.2
A07p12030 Brassica napus HOM05D006964 ORTHO05D008861 4.0e-182 642.1 569 62.0
C07p17970 Brassica napus HOM05D006964 ORTHO05D008861 6.8e-182 641.3 560 62.3
Dinv35124 Davidia involucrata HOM05D006964 ORTHO05D008861 1.2e-181 640.6 570 66.0
BcaB03g13997 Brassica carinata HOM05D006964 ORTHO05D008861 2.6e-181 639.4 564 61.9
HanXRQChr11g0342451 Helianthus annuus HOM05D006964 ORTHO05D008861 1.4e-179 633.6 569 64.0
unitig_699.g19570 Utricularia gibba HOM05D006964 ORTHO05D008861 3.2e-179 632.5 559 60.5
Nitab4.5_0002450g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 3.5e-178 629.0 609 58.0
DCAR_005902 Daucus carota HOM05D006964 ORTHO05D008861 6.0e-178 628.2 565 59.5
GSVIVG01015905001 Vitis vinifera HOM05D006964 ORTHO05D008861 1.7e-177 626.7 425 76.5
CDE02G0076 Ceratophyllum demersum HOM05D006964 ORTHO05D008861 3.9e-177 625.5 570 60.7
ECA234G0414 Erigeron canadensis HOM05D006964 ORTHO05D008861 3.9e-177 625.5 571 63.0
SGA_v2.0_scaffold73G24408 Striga asiatica HOM05D006964 ORTHO05D008861 3.9e-177 625.5 567 65.1
Cc11_g00270 Coffea canephora HOM05D006964 ORTHO05D008861 6.6e-177 624.8 613 59.1
EL10Ac6g15329 Beta vulgaris HOM05D006964 ORTHO05D008861 9.5e-176 620.9 575 62.6
Lj1C622G7 Lonicera japonica HOM05D006964 ORTHO05D008861 4.0e-174 615.5 443 70.7
Ah.02g121270 Amaranthus hybridus HOM05D006964 ORTHO05D008861 9.8e-173 610.9 581 60.4
AUR62017863 Chenopodium quinoa HOM05D006964 ORTHO05D008861 9.8e-173 610.9 578 60.6
ATR0763G192 Amborella trichopoda HOM05D006964 ORTHO05D008861 6.2e-167 591.7 613 54.6
SEGI_30607 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 7.6e-157 558.1 731 46.5
AUR62003549 Chenopodium quinoa HOM05D006964 ORTHO05D008861 4.2e-155 552.4 571 59.2
Actinidia35156 Actinidia chinensis HOM05D006964 ORTHO05D008861 1.2e-151 540.8 433 65.4
HPP92_016414 Vanilla planifolia HOM05D006964 ORTHO05D008861 1.1e-144 517.7 546 53.1
SMO116G0181 Selaginella moellendorffii HOM05D006964 ORTHO05D008861 1.2e-141 507.7 424 61.6
Mapoly0100s0005 Marchantia polymorpha HOM05D006964 ORTHO05D008861 1.6e-127 460.7 578 46.4
HPP92_016337 Vanilla planifolia HOM05D006964 ORTHO05D008861 3.0e-121 439.9 491 51.5
Pp3c24_11680 Physcomitrium patens HOM05D006964 ORTHO05D008861 6.9e-118 428.7 579 45.6
Pp3c23_21270 Physcomitrium patens HOM05D006964 ORTHO05D008861 1.3e-108 397.9 577 42.3
PSO677G0001 Papaver somniferum HOM05D006964 ORTHO05D008861 1.6e-93 347.8 242 74.8
Nitab4.5_0000843g0040 Nicotiana tabacum HOM05D006964 ORTHO05D008861 2.0e-93 347.4 242 71.9
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 3.7e-87 326.6 435 43.7
Haze_26752 Corylus avellana HOM05D006964 ORTHO05D008861 1.7e-84 317.8 421 45.6
Ca_28576_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 1.2e-80 305.1 422 43.6
SalBow7G2824 Salvia bowleyana HOM05D006964 ORTHO05D008861 2.8e-71 273.9 155 83.2
SalBow7G3142 Salvia bowleyana HOM05D006964 ORTHO05D008861 2.5e-67 260.8 373 45.8
Eucgr.F00067 Eucalyptus grandis HOM05D006964 ORTHO05D008861 1.4e-49 201.8 146 72.6
Nn1g06845 Nelumbo nucifera HOM05D006964 ORTHO05D008861 1.1e-46 192.2 160 61.9
Migut.M00128 Erythranthe guttata HOM05D006964 ORTHO05D008861 5.4e-46 189.9 263 49.0
Actinidia18866 Actinidia chinensis HOM05D006964 ORTHO05D008861 4.3e-43 180.3 241 46.5
Medtr6g036640 Medicago truncatula HOM05D006964 ORTHO05D008861 4.4e-40 170.2 115 77.4
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.3e-34 152.1 207 48.8
PGSC0003DMG400021041 Solanum tuberosum HOM05D006964 ORTHO05D008861 3.4e-32 144.1 78 91.0
Pp3c7_25960 Physcomitrium patens HOM05D006964 ORTHO05D008861 7.1e-22 109.8 101 58.4
MD11G1318300 Malus domestica HOM05D006964 ORTHO05D008861 2.1e-21 108.2 64 79.7
SEGI_03426 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 1.6e-13 82.0 100 48.0
CsaV3_4G007240 Cucumis sativus L. HOM05D006964 ORTHO05D008861 3.5e-13 80.9 64 65.6
Pp3s356_30 Physcomitrium patens HOM05D006964 ORTHO05D317654 8.2e-10 69.7 273 29.7
CBR_g61476 Chara braunii HOM05D001470 ORTHO05D006756 3.4e-08 64.3 230 29.1
arahy.Tifrunner.gnm1.ann1.D58UPY Arachis hypogaea HOM05D001470 ORTHO05D006756 4.5e-08 63.9 245 26.5
arahy.Tifrunner.gnm1.ann1.0P0L33 Arachis hypogaea HOM05D001470 ORTHO05D006756 5.8e-08 63.5 234 25.6
MD15G1344500 Malus domestica HOM05D001470 ORTHO05D006430 5.8e-08 63.5 288 25.0
Ciclev10001597m.g Citrus clementina HOM05D001470 ORTHO05D006756 7.6e-08 63.2 224 27.7
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 1.7e-07 62.0 224 27.2
AL2G37670 Arabidopsis lyrata HOM05D001470 ORTHO05D006756 2.9e-07 61.2 288 25.0
Os02g0775200 Oryza sativa ssp. japonica HOM05D001470 ORTHO05D006756 2.9e-07 61.2 223 27.8
Duzib116G0621 Durio zibethinus HOM05D001470 ORTHO05D006756 3.8e-07 60.8 228 27.2
SEGI_05683 Sequoiadendron giganteum HOM05D001470 ORTHO05D006967 3.8e-07 60.8 221 26.2
Cre12.g527300 Chlamydomonas reinhardtii HOM05D001470 ORTHO05D006756 5.0e-07 60.5 234 27.8
Aqoxy1G02492 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 6.5e-07 60.1 75 49.3
Rhsim11G0069700 Rhododendron simsii HOM05D001470 ORTHO05D006756 6.5e-07 60.1 239 27.2
Aa31LG4G7480 Aethionema arabicum HOM05D001470 ORTHO05D006756 8.4e-07 59.7 222 25.2
Aqoxy6G00254 Aquilegia oxysepala HOM05D001470 ORTHO05D006756 1.1e-06 59.3 224 27.2
Lalb_Chr11g0065951 Lupinus albus HOM05D001470 ORTHO05D006756 1.1e-06 59.3 224 27.7
Mapoly0024s0100 Marchantia polymorpha HOM05D001470 ORTHO05D006756 1.1e-06 59.3 225 26.2
Phvul.009G126000 Phaseolus vulgaris HOM05D001470 ORTHO05D006756 1.1e-06 59.3 224 26.8
ClCG08G005860 Citrullus lanatus HOM05D001470 ORTHO05D006756 1.4e-06 58.9 235 26.0
Glyma.06G114100 Glycine max HOM05D001470 ORTHO05D006756 1.4e-06 58.9 224 27.2
Sed0023365 Sechium edule HOM05D001470 ORTHO05D006756 1.4e-06 58.9 244 26.2
Ca_16563_v3 Cicer arietinum L. HOM05D001470 ORTHO05D006756 1.9e-06 58.5 221 26.7
DCAR_026835 Daucus carota HOM05D001470 ORTHO05D006756 1.9e-06 58.5 223 26.0
Glyma.04G248900 Glycine max HOM05D001470 ORTHO05D006756 1.9e-06 58.5 224 27.2
Gohir.A05G236800 Gossypium hirsutum HOM05D001470 ORTHO05D006756 1.9e-06 58.5 223 26.9
Pp3c13_4510 Physcomitrium patens HOM05D001470 ORTHO05D006756 1.9e-06 58.5 231 26.8
CARHR070990 Cardamine hirsuta HOM05D001470 ORTHO05D006756 2.5e-06 58.2 222 25.2
CBR_g10932 Chara braunii HOM05D001470 ORTHO05D006967 2.5e-06 58.2 221 26.7
Duzib093G0261 Durio zibethinus HOM05D001470 ORTHO05D006756 2.5e-06 58.2 223 26.5
ECA246G0547 Erigeron canadensis HOM05D001470 ORTHO05D006967 2.5e-06 58.2 233 26.2
HanXRQChr06g0165451 Helianthus annuus HOM05D001470 ORTHO05D006967 2.5e-06 58.2 233 24.9
Manes.02G025701 Manihot esculenta HOM05D001470 ORTHO05D006967 2.5e-06 58.2 233 25.3
Nitab4.5_0005213g0030 Nicotiana tabacum HOM05D001470 ORTHO05D006967 2.5e-06 58.2 221 26.2
PRCOL_00005755 Prasinoderma coloniale HOM05D001470 ORTHO05D006430 2.5e-06 58.2 339 26.0
SMO329G0082 Selaginella moellendorffii HOM05D001470 ORTHO05D006756 2.5e-06 58.2 230 25.2
MSTRG.25372 Avicennia marina HOM05D001470 ORTHO05D006756 3.2e-06 57.8 223 26.0
HanXRQChr11g0326191 Helianthus annuus HOM05D001470 ORTHO05D006430 3.2e-06 57.8 287 25.1
Manes.18G079501 Manihot esculenta HOM05D001470 ORTHO05D006756 3.2e-06 57.8 223 27.4
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 3.2e-06 57.8 223 24.7
MSTRG.1421 Avicennia marina HOM05D001470 ORTHO05D006430 4.2e-06 57.4 283 25.8
Carub.0002s2436 Capsella rubella HOM05D001470 ORTHO05D006756 4.2e-06 57.4 222 24.8
ECA232G1439 Erigeron canadensis HOM05D001470 ORTHO05D006430 4.2e-06 57.4 287 24.0
Lalb_Chr08g0241231 Lupinus albus HOM05D001470 ORTHO05D006430 4.2e-06 57.4 284 24.3
Prupe.1G492200 Prunus persica HOM05D001470 ORTHO05D006430 4.2e-06 57.4 288 24.0
THA.LOC104800216 Tarenaya hassleriana HOM05D001470 ORTHO05D006430 4.2e-06 57.4 292 24.0
Thecc.03G272700 Theobroma cacao HOM05D001470 ORTHO05D006967 4.2e-06 57.4 221 25.8
Aa31LG7G5660 Aethionema arabicum HOM05D001470 ORTHO05D006430 5.5e-06 57.0 172 26.7
Ah.13g075060 Amaranthus hybridus HOM05D001470 ORTHO05D006967 5.5e-06 57.0 221 25.8
AagrBONN_evm.TU.Sc2ySwM_344.153 Anthoceros agrestis HOM05D001470 ORTHO05D006756 5.5e-06 57.0 244 25.0
CANSAT56G2008 Cannabis sativa HOM05D001470 ORTHO05D006430 5.5e-06 57.0 288 23.6
ClCG00G002270 Citrullus lanatus HOM05D001470 ORTHO05D006756 5.5e-06 57.0 244 25.8
Duzib068G0329 Durio zibethinus HOM05D001470 ORTHO05D006967 5.5e-06 57.0 221 25.8
Lsat_1_v5_gn_3_5320 Lactuca sativa HOM05D001470 ORTHO05D006967 5.5e-06 57.0 233 25.8
A02p21300 Brassica napus HOM05D001470 ORTHO05D006756 7.1e-06 56.6 222 24.3
BraA02t07148Z Brassica rapa HOM05D001470 ORTHO05D006756 7.1e-06 56.6 222 24.3
Migut.L00248 Erythranthe guttata HOM05D001470 ORTHO05D006430 7.1e-06 56.6 287 25.4
Manes.02G166700 Manihot esculenta HOM05D001470 ORTHO05D006430 7.1e-06 56.6 291 23.7
Os12g0176500 Oryza sativa ssp. japonica HOM05D001470 ORTHO05D006430 7.1e-06 56.6 284 25.0
Aqoxy5G02375 Aquilegia oxysepala HOM05D001470 ORTHO05D006430 9.3e-06 56.2 289 24.2
Cc08_g14150 Coffea canephora HOM05D001470 ORTHO05D006967 9.3e-06 56.2 221 24.9
Cc10_g12180 Coffea canephora HOM05D001470 ORTHO05D006756 9.3e-06 56.2 224 27.2
Glyma.06G116000 Glycine max HOM05D001470 ORTHO05D006430 9.3e-06 56.2 288 25.0
Hma1.2p1_0371F.1_g138060 Hydrangea macrophylla HOM05D001470 ORTHO05D006967 9.3e-06 56.2 233 25.3
Hma1.2p1_0542F.1_g175030 Hydrangea macrophylla HOM05D001470 ORTHO05D006430 9.3e-06 56.2 287 24.7
MD11G1318400 Malus domestica HOM05D006964 ORTHO05D245689 9.3e-06 56.2 52 61.5
Sed0019306 Sechium edule HOM05D001470 ORTHO05D006430 9.3e-06 56.2 288 23.3
Thecc.08G130500 Theobroma cacao HOM05D001470 ORTHO05D006430 9.3e-06 56.2 288 24.0


User provided reference genes

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