Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 1.5e-208 729.2 351 100.0
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.3e-188 662.9 350 90.0
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.8e-186 654.4 350 90.0
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.2e-176 623.2 350 84.6
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 5.9e-176 620.9 350 85.1
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.5e-174 615.5 361 84.2
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 7.9e-173 610.5 350 84.6
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 5.1e-172 607.8 350 82.0
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.5e-168 596.3 350 81.7
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.8e-167 591.7 349 79.9
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.5e-166 589.0 349 79.9
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 4.7e-165 584.7 340 82.1
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 5.4e-145 518.1 352 70.5
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.3e-143 513.5 360 68.3
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.5e-142 509.2 360 68.9
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 4.7e-141 505.0 360 67.5
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 6.1e-141 504.6 362 68.2
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.5e-139 500.0 345 69.6
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.3e-138 496.9 359 64.1
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.7e-138 496.5 369 66.9
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 8.3e-138 494.2 360 66.9
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.4e-137 492.7 360 66.1
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 5.4e-137 491.5 353 67.4
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 7.0e-137 491.1 368 65.5
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.9e-136 488.0 364 63.7
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 7.8e-136 487.6 377 63.7
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 7.8e-136 487.6 365 62.7
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 5.6e-134 481.5 370 63.8
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 2.1e-133 479.6 365 63.6
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 2.8e-133 479.2 359 64.3
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 8.0e-133 477.6 366 62.6
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.4e-132 476.9 362 63.8
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.4e-132 476.9 364 62.9
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.1e-132 475.7 364 62.9
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.0e-132 475.3 359 62.4
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.0e-132 475.3 362 64.1
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.5e-131 473.4 362 64.9
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.6e-131 472.6 371 63.9
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.4e-131 472.2 362 64.9
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 7.5e-131 471.1 361 62.9
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 8.3e-130 467.6 359 65.5
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.4e-129 466.8 321 67.9
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.9e-129 466.5 364 61.5
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.4e-129 466.1 357 65.0
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.4e-129 464.9 356 64.9
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 5.4e-129 464.9 345 64.3
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 7.0e-129 464.5 342 65.2
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 9.2e-129 464.2 357 61.3
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.2e-128 463.8 342 65.5
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.0e-128 463.0 371 60.6
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 2.7e-128 462.6 365 61.4
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.7e-127 459.9 353 60.6
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 6.6e-127 458.0 344 62.8
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 8.6e-127 457.6 359 63.2
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.5e-126 456.8 338 65.4
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.2e-125 453.8 347 61.7
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.6e-125 453.4 341 61.6
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 2.8e-125 452.6 342 61.4
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.8e-124 449.9 344 62.5
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 3.1e-124 449.1 342 60.8
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.1e-124 449.1 412 54.4
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 5.2e-124 448.4 344 61.9
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 2.0e-123 446.4 367 59.1
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 4.4e-123 445.3 342 61.7
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 4.4e-123 445.3 342 61.7
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 7.5e-123 444.5 345 59.4
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 7.5e-123 444.5 432 51.6
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.7e-122 443.4 355 60.3
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.7e-122 443.4 355 60.3
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.7e-122 443.4 343 61.2
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.2e-122 443.0 367 59.1
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.9e-122 441.8 353 61.8
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 8.3e-122 441.0 490 49.2
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.2e-121 439.1 344 59.6
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 7.1e-121 438.0 345 59.4
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 9.2e-121 437.6 356 57.3
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.1e-120 436.4 345 59.7
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 7.8e-120 434.5 363 57.6
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.0e-119 434.1 340 60.9
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.0e-119 434.1 359 61.6
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.0e-119 434.1 363 57.6
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.3e-119 433.7 353 59.5
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.3e-119 433.7 340 60.9
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 6.6e-119 431.4 346 59.8
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 8.6e-119 431.0 339 60.5
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.5e-118 430.3 342 61.1
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.4e-116 423.7 353 60.6
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 2.3e-116 422.9 330 63.3
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 7.6e-115 417.9 358 59.8
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 2.2e-114 416.4 437 50.8
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.2e-113 412.5 353 58.1
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 7.1e-113 411.4 311 65.0
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.1e-112 409.8 384 53.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.7e-109 398.7 359 55.4
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 4.0e-108 395.6 342 57.6
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 5.8e-107 391.7 357 51.5
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.2e-106 389.8 265 67.2
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 3.8e-106 389.0 269 66.9
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 6.4e-106 388.3 368 53.5
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 8.7e-103 377.9 358 50.3
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 4.8e-101 372.1 349 55.0
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.2e-98 363.2 391 46.8
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.9e-98 362.8 357 54.9
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 8.7e-95 351.3 319 56.4
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 1.8e-92 343.6 354 51.1
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.3e-90 337.4 244 65.6
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.0e-87 327.8 424 42.7
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.5e-86 323.2 206 73.8
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 9.6e-86 321.2 291 55.7
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.0e-83 313.5 209 70.3
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.6e-80 303.9 411 40.4
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.0e-79 301.2 292 52.1
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.1e-76 289.3 154 82.5
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 9.0e-76 288.1 345 45.8
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.9e-73 280.4 376 42.0
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 4.6e-72 275.8 350 40.6
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 2.0e-67 260.4 226 58.4
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 5.7e-62 242.3 134 81.3
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.7e-61 239.6 127 81.9
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 5.7e-54 215.7 260 47.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 5.7e-54 215.7 260 47.3
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.5e-46 191.0 189 51.9
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.5e-46 191.0 189 51.9
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.1e-41 174.9 127 58.3
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.8e-39 167.5 184 48.9
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.5e-38 164.5 194 46.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.4e-36 157.1 83 84.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 5.4e-28 129.4 77 76.6
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 3.6e-24 116.7 135 46.7
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 9.8e-22 108.6 132 45.5
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.0e-18 98.6 199 32.2
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.5e-14 84.7 118 40.7
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.5e-09 67.4 108 41.7


User provided reference genes

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