Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 6.3e-171 604.0 298 100.0
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.3e-144 516.5 304 84.9
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 7.5e-140 500.7 306 83.3
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.4e-138 496.5 310 81.6
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 2.2e-131 472.6 304 77.3
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 7.1e-130 467.6 311 77.2
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 5.1e-128 461.5 306 75.8
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 8.6e-128 460.7 306 75.8
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 8.9e-125 450.7 302 75.2
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 6.4e-123 444.5 328 69.2
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 3.2e-122 442.2 296 75.0
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 7.1e-122 441.0 299 73.9
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.6e-121 439.9 299 73.6
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 3.5e-121 438.7 314 72.0
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 3.5e-121 438.7 314 72.0
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 6.0e-121 438.0 316 71.2
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.0e-120 437.2 317 71.3
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.0e-120 437.2 284 75.0
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.3e-120 436.8 331 68.9
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 5.1e-120 434.9 276 75.7
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 2.5e-119 432.6 307 71.7
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 7.3e-119 431.0 312 69.6
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 9.6e-119 430.6 330 67.9
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 2.1e-118 429.5 312 70.2
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 3.6e-118 428.7 315 69.8
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 4.7e-118 428.3 323 68.7
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 6.2e-118 427.9 310 70.3
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 8.1e-118 427.6 306 71.9
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 8.1e-118 427.6 314 71.0
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 2.4e-117 426.0 341 65.7
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 3.1e-117 425.6 313 70.3
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 8.9e-117 424.1 306 71.2
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 3.4e-116 422.2 300 71.0
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 4.4e-116 421.8 332 65.1
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 4.4e-116 421.8 295 74.9
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.7e-115 419.9 338 64.5
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 1.7e-115 419.9 276 75.4
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.7e-115 419.9 331 65.9
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 4.9e-115 418.3 322 66.8
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 6.4e-115 417.9 311 68.5
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.4e-114 416.8 280 74.6
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.2e-113 413.7 304 67.4
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.2e-113 413.7 316 65.8
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 3.5e-113 412.1 282 72.0
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 3.5e-113 412.1 322 65.8
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 3.5e-113 412.1 322 65.8
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 7.8e-113 411.0 324 67.3
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 3.0e-112 409.1 274 74.5
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 3.9e-112 408.7 280 71.8
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 3.9e-112 408.7 300 69.3
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 6.6e-112 407.9 327 65.1
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 8.7e-112 407.5 332 65.4
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.9e-111 406.4 284 72.5
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 2.5e-111 406.0 271 72.7
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 3.3e-111 405.6 333 63.7
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 4.3e-111 405.2 278 70.5
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 5.6e-111 404.8 324 67.3
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 5.6e-111 404.8 348 62.1
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 5.6e-111 404.8 333 64.6
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 5.6e-111 404.8 270 71.5
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 5.6e-111 404.8 317 64.0
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.3e-110 403.7 319 63.6
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 2.1e-110 402.9 348 60.6
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 2.8e-110 402.5 272 72.1
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 3.6e-110 402.1 270 71.9
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.8e-110 401.7 324 65.7
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 8.1e-110 401.0 298 66.8
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 1.4e-109 400.2 332 64.2
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 4.0e-109 398.7 335 63.3
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 4.0e-109 398.7 325 62.8
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 9.0e-109 397.5 290 70.7
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 9.0e-109 397.5 290 70.7
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 9.0e-109 397.5 290 70.7
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 3.4e-108 395.6 320 64.7
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 3.4e-108 395.6 320 64.7
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 3.4e-108 395.6 320 64.7
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.7e-107 393.3 290 69.7
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 6.4e-107 391.3 274 70.1
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 5.4e-106 388.3 295 65.1
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.6e-105 386.7 318 64.2
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.1e-105 386.3 296 68.2
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.7e-105 386.0 311 65.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.0e-104 384.0 286 69.2
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.7e-104 383.3 338 60.9
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 8.7e-104 380.9 347 59.1
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 3.3e-103 379.0 314 64.3
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 4.3e-103 378.6 287 66.9
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 4.3e-103 378.6 284 68.0
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.4e-101 373.6 304 65.8
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.8e-101 373.2 269 68.0
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 2.0e-100 369.8 293 64.8
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 3.4e-100 369.0 247 69.6
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 2.4e-98 362.8 279 65.6
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.2e-98 362.1 281 64.1
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.2e-97 360.5 298 64.4
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 1.6e-97 360.1 280 62.9
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 3.0e-96 355.9 307 63.2
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.4e-93 347.1 264 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 2.4e-93 346.3 273 61.5
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 2.0e-92 343.2 273 60.4
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 2.0e-92 343.2 304 58.9
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.0e-91 340.9 267 59.9
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 8.4e-91 337.8 210 77.1
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.1e-90 337.4 213 74.2
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.1e-90 337.4 208 76.4
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 6.0e-89 331.6 228 71.9
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 6.7e-88 328.2 219 72.6
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 5.7e-87 325.1 325 54.2
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 4.8e-86 322.0 228 71.9
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.7e-81 306.2 309 56.0
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 5.1e-80 302.0 227 60.4
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.2e-76 290.8 240 57.5
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 4.5e-76 288.9 226 61.5
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.1e-74 284.3 240 57.5
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 1.2e-65 254.2 294 45.9
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 3.6e-65 252.7 203 62.1
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.8e-64 250.4 211 64.9
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 5.7e-63 245.4 166 71.1
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 8.2e-62 241.5 189 66.1
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.8e-61 240.4 216 55.6
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 4.8e-54 215.7 281 43.8
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 1.1e-53 214.5 184 55.4
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 1.2e-52 211.1 232 51.7
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 3.5e-44 183.0 119 76.5
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.3e-43 181.0 175 54.9
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 1.2e-41 174.5 109 76.1
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.0e-40 169.5 187 48.7
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-39 167.5 187 48.1
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 2.6e-39 166.8 98 80.6
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.1e-37 161.4 102 81.4
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-37 161.0 187 46.5
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.4e-37 159.1 187 47.1
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 2.5e-34 150.2 85 82.4
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.0e-33 145.2 183 43.2
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.4e-32 144.4 187 43.9
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 1.7e-30 137.5 77 84.4
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 4.1e-29 132.9 97 68.0
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 3.5e-28 129.8 162 48.8
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-27 127.5 187 39.0
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 8.6e-27 125.2 83 71.1
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.1e-25 120.6 175 38.3
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.1e-25 120.6 175 38.3
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 1.4e-24 117.9 148 44.6
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.3e-24 117.1 186 38.2
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.3e-24 117.1 139 46.0
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.6e-20 102.8 187 33.7
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 4.0e-16 89.7 180 31.7
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 5.4e-13 79.3 173 31.2
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 1.6e-12 77.8 68 58.8
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 6.0e-12 75.9 57 63.2
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.8e-08 64.3 32 84.4
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.0e-08 63.2 92 37.0
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 3.8e-06 56.6 49 55.1
Pp3c9_17820 Physcomitrium patens HOM05D004663 ORTHO05D318098 3.8e-06 56.6 68 44.1


User provided reference genes

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