Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 0.0e+00 1119.0 564 100.0
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.7e-294 1015.4 567 91.5
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 9.8e-290 999.6 569 89.6
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 2.4e-288 995.0 569 89.5
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.2e-287 992.6 572 90.2
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 3.5e-287 991.1 569 88.6
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 5.5e-285 983.8 569 87.7
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 3.7e-281 971.1 571 87.4
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.9e-278 961.4 570 86.7
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 9.5e-269 929.9 581 83.1
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.6e-268 929.1 581 83.1
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 4.9e-257 891.0 567 79.4
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 8.3e-257 890.2 570 81.4
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 2.4e-256 888.6 569 80.0
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 9.2e-256 886.7 574 80.5
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 5.1e-254 880.9 569 79.4
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 1.1e-253 879.8 569 79.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.5e-253 879.4 499 89.6
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 2.5e-253 878.6 568 79.2
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 2.1e-252 875.5 549 82.0
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.1e-252 875.5 568 79.0
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 2.8e-252 875.2 568 79.6
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.8e-251 872.5 571 78.8
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 3.1e-251 871.7 570 78.2
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 5.2e-251 870.9 569 77.9
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 6.8e-251 870.5 570 78.4
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.2e-250 869.8 567 79.2
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.7e-249 865.9 567 78.3
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 6.4e-249 864.0 570 78.9
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.4e-248 862.8 567 78.7
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 2.1e-247 859.0 588 76.4
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 8.6e-246 853.6 568 77.1
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 3.3e-245 851.7 575 78.3
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 4.3e-245 851.3 570 77.4
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 5.6e-245 850.9 573 77.7
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 7.3e-245 850.5 571 77.4
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 7.3e-245 850.5 567 77.8
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 1.2e-244 849.7 571 76.7
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 2.1e-244 849.0 572 76.7
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 4.7e-244 847.8 572 76.7
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.4e-243 846.3 573 76.8
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.4e-243 845.5 575 77.6
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 4.0e-243 844.7 581 78.0
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.4e-242 841.6 583 75.5
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 7.6e-242 840.5 568 76.6
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 9.9e-242 840.1 575 75.7
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 9.9e-242 840.1 569 78.0
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.8e-241 838.2 569 77.9
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.2e-239 833.2 571 75.8
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 6.0e-239 830.9 578 76.6
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.0e-238 830.1 566 74.7
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.7e-238 829.3 573 75.7
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.1e-238 827.8 573 75.6
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.6e-238 827.4 573 75.4
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.6e-238 827.4 573 75.6
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 6.6e-238 827.4 579 75.5
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.6e-236 821.6 569 77.0
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.8e-235 819.3 570 74.9
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.4e-235 818.9 569 73.8
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 5.3e-235 817.8 576 75.3
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 6.9e-235 817.4 570 76.1
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 9.0e-235 817.0 572 74.7
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.2e-234 816.6 671 66.5
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 7.6e-234 813.9 569 73.8
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.7e-233 812.8 600 72.2
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.7e-233 812.8 573 75.2
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.9e-233 812.0 570 75.6
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 4.2e-232 808.1 573 74.7
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 7.1e-232 807.4 570 75.3
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 5.1e-230 801.2 572 73.4
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 7.4e-229 797.3 573 72.8
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.1e-228 795.8 528 77.8
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 6.2e-228 794.3 632 67.7
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 3.5e-223 778.5 578 72.3
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 3.0e-222 775.4 566 71.7
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 6.7e-222 774.2 599 67.9
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 3.3e-221 771.9 571 70.9
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.3e-220 770.0 564 71.1
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.3e-220 770.0 566 71.7
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 3.7e-220 768.5 562 71.9
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 2.9e-217 758.8 591 70.6
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 4.9e-217 758.1 554 72.2
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 6.5e-217 757.7 588 69.0
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 6.5e-217 757.7 566 70.0
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 8.4e-217 757.3 517 77.8
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 5.5e-216 754.6 550 71.6
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.7e-215 752.3 571 69.5
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.5e-213 746.5 568 69.7
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.9e-213 746.1 581 67.6
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 5.7e-213 744.6 560 70.2
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 5.7e-213 744.6 560 70.2
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 5.7e-213 744.6 560 70.2
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 5.7e-213 744.6 558 70.6
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.8e-212 742.3 556 69.6
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 3.7e-212 741.9 556 71.0
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 4.8e-212 741.5 555 70.6
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.1e-211 740.3 735 57.0
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 4.1e-211 738.4 560 69.8
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 3.4e-210 735.3 560 69.5
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.3e-209 733.4 506 73.9
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 6.7e-206 721.1 550 70.0
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 5.7e-205 718.0 581 67.1
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.0e-201 707.2 573 68.9
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 5.0e-193 678.3 570 66.5
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 6.5e-193 677.9 571 65.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.9e-192 676.4 568 65.3
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 2.0e-189 666.4 418 81.1
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 5.0e-185 651.7 488 69.3
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 5.9e-170 601.7 591 58.7
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 2.3e-150 536.6 383 71.8
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 8.6e-145 518.1 501 58.5
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 8.6e-145 518.1 501 58.5
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 8.6e-145 518.1 501 58.5
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 2.5e-136 490.0 606 50.2
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 9.5e-136 488.0 592 50.5
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.3e-124 451.1 480 57.7
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 6.4e-124 448.7 263 83.3
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.3e-119 434.5 351 66.7
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.4e-89 334.7 262 69.8
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 4.7e-82 309.7 195 80.5
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 1.1e-80 305.1 331 56.8
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 4.4e-80 303.1 243 67.1
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 4.8e-79 299.7 161 91.9
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 5.3e-78 296.2 550 40.7
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 2.6e-77 293.9 347 52.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.8e-73 281.2 157 87.9
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-73 280.8 271 57.9
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.1e-67 261.9 194 70.6
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.5e-67 261.5 164 84.1
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 6.3e-63 246.1 414 41.8
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 7.5e-56 222.6 167 70.1
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 9.1e-54 215.7 134 76.9
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 8.0e-50 202.6 148 66.9
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 5.2e-49 199.9 426 39.4
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 2.3e-44 184.5 178 57.3
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-42 177.9 114 78.1
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.4e-41 175.3 119 82.4
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 2.2e-39 167.9 147 61.2
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 3.2e-38 164.1 582 30.6
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-35 155.2 156 55.1
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.5e-27 127.9 77 81.8
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.8e-25 121.7 112 58.9
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 2.6e-24 117.9 58 98.3
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 9.9e-24 115.9 75 74.7
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 8.6e-20 102.8 82 57.3
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 2.1e-18 98.2 182 34.6
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.8e-18 97.8 115 49.6
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 6.2e-18 96.7 66 78.8
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 6.2e-18 96.7 69 75.4
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-16 92.4 137 40.1
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 7.6e-16 89.7 68 70.6
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.4e-14 85.5 83 50.6
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 3.5e-13 80.9 87 46.0
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 7.8e-13 79.7 57 78.9
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 3.6e-10 70.9 46 82.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 9.0e-09 66.2 64 64.1
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 3.8e-07 60.8 36 83.3
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 4.9e-07 60.5 68 44.1
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 1.9e-06 58.5 53 49.1


User provided reference genes

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