Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1465.7 741 100.0
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1416.7 741 96.2
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1414.8 741 96.1
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1400.6 741 94.3
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1361.3 741 92.2
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1360.5 740 91.9
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1359.4 740 92.0
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1355.9 743 91.5
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1350.5 768 89.2
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1349.7 741 90.1
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1345.1 741 90.8
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1343.2 741 90.3
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1341.6 741 89.3
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1340.9 741 89.2
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 739 89.7
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1337.4 741 89.6
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1337.4 742 89.6
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1337.4 741 89.5
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1335.5 741 89.7
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1335.1 741 89.6
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1334.3 741 88.9
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1333.9 741 88.9
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1333.9 741 89.7
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1329.7 741 89.2
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1328.9 741 88.8
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1328.5 741 88.8
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1328.2 741 88.4
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 741 88.4
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 741 88.9
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1326.6 743 89.5
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1324.3 741 89.1
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1324.3 740 89.7
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 741 88.4
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 742 88.0
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1317.0 747 87.4
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 741 87.9
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 740 87.7
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1315.8 741 87.9
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1315.1 741 87.7
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1314.3 740 88.2
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1314.3 741 87.6
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 742 87.5
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1312.4 740 88.1
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1312.4 741 87.6
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1312.0 738 88.2
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1310.8 741 88.1
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1310.4 741 87.2
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 743 88.6
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1309.7 741 87.2
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1309.3 741 87.2
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1309.3 742 87.2
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 763 86.6
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 763 86.6
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 740 88.1
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1307.4 741 87.3
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 740 87.7
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 740 88.0
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 739 87.6
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1305.8 740 87.2
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1304.3 741 87.3
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1303.9 740 86.8
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 740 86.9
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 741 88.1
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 741 86.6
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 743 86.8
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 741 87.0
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1301.2 740 86.8
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 740 86.5
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 741 88.4
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 743 87.8
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 741 86.6
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 740 86.5
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 740 86.5
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 742 87.5
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 745 86.6
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1298.5 742 86.7
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 741 86.5
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 741 87.2
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1296.2 740 86.4
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 744 87.1
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1293.5 741 86.5
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 741 86.5
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1292.7 741 86.5
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1291.9 741 86.6
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1290.0 740 86.6
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 744 86.7
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 741 86.4
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 742 85.7
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1286.2 741 86.9
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1284.6 741 86.4
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 743 86.4
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 741 86.6
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1281.5 741 85.3
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1281.2 743 85.6
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 744 86.3
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1278.8 737 86.2
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1278.5 803 80.9
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1278.1 757 84.3
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1276.5 707 89.4
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1276.2 741 85.8
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1273.5 744 85.3
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1272.7 744 86.0
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 822 79.3
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1266.9 711 88.6
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 743 85.5
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1262.3 773 82.5
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1259.6 747 84.1
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1243.0 720 86.1
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1239.9 710 87.3
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1232.2 745 81.9
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1231.9 707 86.6
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1231.5 740 83.8
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1225.3 734 85.1
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 674 90.9
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1219.5 739 82.3
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1216.8 747 81.3
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1208.7 668 90.0
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1202.6 747 80.3
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1176.4 750 80.7
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1152.5 616 91.9
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1141.7 738 77.4
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1130.9 739 75.6
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1127.1 687 80.8
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1117.4 631 87.2
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1107.0 740 74.2
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.0e-311 1072.8 740 71.9
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 4.9e-297 1024.2 637 80.1
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 8.1e-244 847.4 667 64.0
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 5.1e-230 801.6 699 60.4
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.2e-224 781.2 539 76.4
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.1e-216 757.3 644 62.0
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.7e-212 743.4 523 74.6
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 4.2e-208 728.8 453 81.9
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.3e-205 719.2 741 55.3
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 6.3e-204 714.9 739 55.1
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 2.7e-202 709.5 464 78.0
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 9.0e-134 481.9 263 89.0
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 4.9e-132 476.1 433 61.2
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.0e-96 357.8 218 82.6
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 3.6e-82 310.5 579 37.7
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 5.5e-75 286.6 152 90.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 2.2e-71 274.6 143 92.3
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.6e-59 233.4 170 72.4
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 9.9e-40 169.5 273 38.5
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.9e-38 165.2 84 91.7
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 7.1e-38 163.3 98 78.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 4.3e-35 154.1 80 91.2
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.9e-28 131.0 80 77.5
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 5.1e-28 130.6 72 87.5
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 3.6e-26 124.4 71 85.9
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 2.6e-24 118.2 69 78.3
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 3.5e-21 107.8 70 75.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 3.0e-20 104.8 85 62.4
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.3e-19 101.3 108 53.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 7.4e-19 100.1 73 74.0
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 9.6e-19 99.8 222 34.7
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.1e-18 98.6 75 68.0
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 1.4e-17 95.9 85 56.5
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.8e-17 95.5 75 65.3
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 2.2e-15 88.6 69 60.9
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 7.1e-14 83.6 47 85.1
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 3.5e-13 81.3 49 89.8
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.3e-12 78.6 47 78.7
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 3.9e-12 77.8 61 62.3
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 8.7e-12 76.6 46 78.3
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.1e-11 76.3 45 80.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.8e-10 71.6 43 72.1
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.8e-09 68.9 40 82.5
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.8e-09 68.9 52 55.8
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 3.2e-06 58.2 33 81.8


User provided reference genes

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