Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 8.3e-264 913.3 509 100.0
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 3.8e-224 781.6 547 81.4
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 2.1e-219 765.8 554 77.8
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 2.4e-210 735.7 561 72.9
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 2.0e-201 706.1 539 73.7
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.3e-192 676.8 519 70.7
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.1e-188 663.7 518 70.1
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 2.4e-186 656.0 536 67.7
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 2.4e-186 656.0 526 66.0
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 9.1e-186 654.1 539 69.0
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 4.5e-185 651.7 519 68.0
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 7.7e-185 651.0 530 69.1
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.0e-184 650.6 530 69.1
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 1.3e-184 650.2 524 69.7
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 1.9e-183 646.4 464 72.2
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 2.5e-183 646.0 529 66.2
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 5.5e-183 644.8 464 72.0
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 5.5e-183 644.8 474 71.3
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 7.2e-183 644.4 464 72.0
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 9.4e-183 644.0 462 74.0
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 2.7e-182 642.5 470 71.7
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 2.7e-182 642.5 534 67.2
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 3.6e-182 642.1 521 68.1
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 3.6e-182 642.1 461 74.2
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 6.1e-182 641.3 519 68.6
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.0e-181 640.6 464 71.8
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.8e-181 639.8 534 63.7
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.3e-179 633.6 466 70.2
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 2.2e-179 632.9 472 68.6
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 1.1e-178 630.6 523 65.4
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 1.4e-178 630.2 525 64.2
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 3.1e-178 629.0 463 70.0
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 5.3e-178 628.2 463 70.2
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 9.1e-178 627.5 467 72.2
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 9.1e-178 627.5 473 69.3
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 1.2e-177 627.1 462 72.1
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.2e-177 627.1 473 69.6
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 1.6e-177 626.7 473 69.3
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 2.0e-177 626.3 462 71.0
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 2.6e-177 625.9 484 70.2
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 3.8e-176 622.1 490 66.7
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 3.8e-176 622.1 461 69.6
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 3.8e-176 622.1 480 66.0
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 8.5e-176 620.9 462 69.5
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 8.5e-176 620.9 506 64.2
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 1.1e-175 620.5 462 68.6
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.1e-175 620.5 466 69.5
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 3.2e-175 619.0 518 66.8
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 4.2e-175 618.6 462 69.7
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 5.5e-175 618.2 462 69.5
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 3.6e-174 615.5 462 70.3
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 8.0e-174 614.4 462 70.1
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 1.0e-173 614.0 463 70.8
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 4.0e-173 612.1 561 59.9
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 5.2e-173 611.7 462 67.7
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 6.7e-173 611.3 462 70.1
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 1.1e-170 604.0 469 69.1
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 1.8e-170 603.2 462 68.2
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 2.4e-170 602.8 462 68.0
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 2.4e-170 602.8 484 70.5
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 5.3e-170 601.7 462 66.7
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 1.2e-169 600.5 469 68.9
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 2.7e-169 599.4 462 66.7
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 2.7e-169 599.4 463 69.5
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.0e-168 597.4 467 67.5
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 1.7e-168 596.7 464 67.0
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 5.0e-168 595.1 462 67.7
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 5.0e-168 595.1 462 67.1
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 5.0e-168 595.1 462 67.7
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 6.5e-168 594.7 462 67.1
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 1.1e-167 594.0 464 65.3
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 2.5e-167 592.8 462 67.5
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 4.2e-167 592.0 468 65.4
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 7.2e-167 591.3 479 64.1
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.6e-166 590.1 463 66.3
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 8.0e-166 587.8 473 67.0
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 1.5e-164 583.6 462 66.0
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.0e-164 583.2 475 66.1
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 4.1e-162 575.5 465 65.2
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 7.0e-162 574.7 466 65.9
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 7.0e-162 574.7 462 64.9
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 9.1e-162 574.3 470 68.5
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 1.6e-161 573.5 481 63.6
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 6.6e-160 568.2 465 64.5
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 1.6e-158 563.5 478 66.3
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 3.7e-155 552.4 463 67.2
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.8e-154 550.1 462 63.2
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 4.1e-154 548.9 449 64.8
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 7.8e-153 544.7 376 73.1
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 2.3e-152 543.1 462 61.7
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 1.4e-146 523.9 376 70.7
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 6.8e-141 505.0 392 65.3
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.6e-137 493.8 466 57.1
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 2.9e-131 473.0 505 54.7
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 6.0e-129 465.3 508 51.8
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 2.9e-91 340.1 306 58.2
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 1.6e-86 324.3 300 60.7
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 1.3e-83 314.7 397 44.1
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-77 295.0 167 83.2
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 5.9e-76 289.3 436 38.1
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.8e-70 270.4 220 64.5
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 5.3e-69 266.2 225 62.2
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 2.5e-66 257.3 222 60.8
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 2.6e-63 247.3 400 35.5
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 8.2e-62 242.3 376 38.6
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 2.1e-57 227.6 125 83.2
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 3.0e-56 223.8 201 58.7
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 4.0e-56 223.4 125 84.8
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 5.2e-56 223.0 226 54.9
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 3.4e-55 220.3 183 62.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.6e-49 201.4 167 74.3
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 2.3e-48 197.6 140 65.7
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 5.2e-48 196.4 155 65.8
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 1.5e-42 178.3 301 38.5
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 1.9e-34 151.4 80 87.5
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 4.7e-25 120.2 114 59.6
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 7.5e-23 112.8 230 34.8
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 2.2e-22 111.3 135 53.3
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 2.3e-19 101.3 89 58.4
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 4.0e-16 90.5 53 79.2
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 6.4e-14 83.2 93 48.4
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 8.3e-14 82.8 145 42.1
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 1.1e-13 82.4 88 54.5
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 1.3e-11 75.5 117 41.0
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 1.1e-10 72.4 49 65.3
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 1.5e-10 72.0 103 49.5
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 9.6e-10 69.3 51 66.7
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 3.6e-09 67.4 81 48.1
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 3.4e-07 60.8 32 87.5


User provided reference genes

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