Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050463 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 1.3e-273 946.0 557 100.0
CSS0031811 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 7.4e-173 611.3 563 74.4
Actinidia09479 Actinidia chinensis HOM05D002628 ORTHO05D002785 6.3e-156 555.1 558 70.1
Dinv19196 Davidia involucrata HOM05D002628 ORTHO05D002785 3.4e-154 549.3 579 66.1
Dinv12687 Davidia involucrata HOM05D002628 ORTHO05D002785 2.0e-149 533.5 581 67.1
Actinidia23721 Actinidia chinensis HOM05D002628 ORTHO05D002785 7.4e-149 531.6 518 68.1
Actinidia37601 Actinidia chinensis HOM05D002628 ORTHO05D002785 6.3e-148 528.5 569 66.6
TAR633G2086 Trochodendron aralioides HOM05D002628 ORTHO05D002785 1.6e-119 434.1 578 58.8
Cfa002577 Carpinus fangiana HOM05D002628 ORTHO05D002785 4.7e-119 432.6 582 56.2
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 4.7e-119 432.6 583 51.8
Duzib211G0579 Durio zibethinus HOM05D002628 ORTHO05D002785 2.2e-116 423.7 581 55.2
Rhsim01G0255500 Rhododendron simsii HOM05D002628 ORTHO05D002785 3.2e-115 419.9 567 58.7
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 1.2e-114 417.9 577 52.3
Manes.13G047100 Manihot esculenta HOM05D002628 ORTHO05D002785 1.2e-114 417.9 566 53.4
Thecc.01G224600 Theobroma cacao HOM05D002628 ORTHO05D002785 3.0e-113 413.3 593 55.3
QL09p053994 Quercus lobata HOM05D002628 ORTHO05D002785 3.6e-111 406.4 574 54.9
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 1.7e-108 397.5 585 53.8
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 7.0e-107 392.1 592 51.7
Potri.002G243350 Populus trichocarpa HOM05D002628 ORTHO05D002785 2.7e-106 390.2 586 51.2
vmacro14750 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 4.6e-106 389.4 574 53.0
FvH4_2g18860 Fragaria vesca HOM05D002628 ORTHO05D002785 5.0e-105 386.0 584 51.7
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 5.0e-105 386.0 584 50.9
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 1.5e-104 384.4 584 50.3
TWI75G1871 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 1.5e-104 384.4 583 51.8
Gohir.D11G144700 Gossypium hirsutum HOM05D002628 ORTHO05D002785 2.5e-104 383.6 584 50.5
TWI36G1593 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 1.2e-103 381.3 588 51.0
TAR362G0009 Trochodendron aralioides HOM05D002628 ORTHO05D002785 1.2e-103 381.3 517 55.9
CiPaw.03G148700 Carya illinoinensis HOM05D002628 ORTHO05D002785 3.6e-103 379.8 584 52.6
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 8.1e-103 378.6 598 50.2
RcHm_v2.0_Chr6g0284671 Rosa chinensis HOM05D002628 ORTHO05D002785 5.2e-102 375.9 588 51.0
FAN24G2878 Fragaria x ananassa HOM05D002628 ORTHO05D002785 1.5e-101 374.4 585 51.1
Duzib133G0258 Durio zibethinus HOM05D002628 ORTHO05D002785 2.9e-100 370.2 584 51.7
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 4.9e-100 369.4 504 51.8
MD05G1174400 Malus domestica HOM05D002628 ORTHO05D002785 2.4e-99 367.1 591 50.9
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 2.7e-98 363.6 525 50.9
FAN27G0734 Fragaria x ananassa HOM05D002628 ORTHO05D002785 3.9e-97 359.8 583 48.5
TWI18G0012 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 5.1e-97 359.4 530 50.9
CiPaw.04G105000 Carya illinoinensis HOM05D002628 ORTHO05D002785 8.6e-97 358.6 575 50.3
MD10G1163500 Malus domestica HOM05D002628 ORTHO05D002785 1.1e-94 351.7 588 50.3
Gohir.D08G212600 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.4e-93 346.7 585 50.9
Gohir.A08G194900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 8.4e-92 342.0 582 51.0
Gorai.004G226000 Gossypium raimondii HOM05D002628 ORTHO05D002785 4.1e-91 339.7 583 50.6
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 3.5e-90 336.7 524 51.0
Gohir.A07G201100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.0e-89 333.6 563 50.4
Phvul.008G126600 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 3.9e-89 333.2 586 46.2
Gorai.001G233800 Gossypium raimondii HOM05D002628 ORTHO05D002785 5.1e-89 332.8 577 51.8
Gohir.D07G207400 Gossypium hirsutum HOM05D002628 ORTHO05D002785 6.6e-89 332.4 575 52.0
Lalb_Chr19g0125651 Lupinus albus HOM05D002628 ORTHO05D002785 2.5e-88 330.5 583 48.9
VMungo1383G0087 Vigna mungo HOM05D002628 ORTHO05D002785 1.4e-86 324.7 585 46.2
MELO3C021029.2 Cucumis melo HOM05D002628 ORTHO05D002785 6.9e-86 322.4 575 45.6
PGSC0003DMG400017665 Solanum tuberosum HOM05D002628 ORTHO05D002785 8.9e-86 322.0 576 44.6
Actinidia39759 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.5e-85 321.2 396 62.4
Aqoxy6G02008 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 6.4e-84 315.8 523 48.9
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 2.4e-83 313.9 527 46.9
Glyma.03G081300 Glycine max HOM05D002628 ORTHO05D002785 4.6e-82 309.7 569 47.3
Duzib138G1695 Durio zibethinus HOM05D002628 ORTHO05D002785 5.1e-81 306.2 590 45.6
Actinidia39763 Actinidia chinensis HOM05D002628 ORTHO05D002785 8.7e-81 305.4 412 56.3
Lj1g0019543 Lotus japonicus HOM05D002628 ORTHO05D002785 2.5e-80 303.9 573 45.5
Ca_26871_v3 Cicer arietinum L. HOM05D002628 ORTHO05D002785 7.3e-80 302.4 575 44.0
VMungo0331G0007 Vigna mungo HOM05D002628 ORTHO05D002785 8.1e-79 298.9 574 43.9
vmacro02763 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 3.4e-77 293.5 398 50.8
Solyc09g060080.4 Solanum lycopersicum HOM05D002628 ORTHO05D002785 1.3e-76 291.6 574 42.7
Lj3g0004121 Lotus japonicus HOM05D002628 ORTHO05D002785 4.9e-76 289.7 572 47.6
Sopen09g023690 Solanum pennellii HOM05D002628 ORTHO05D002785 4.9e-76 289.7 576 42.7
Phvul.010G018800 Phaseolus vulgaris HOM05D002628 ORTHO05D002785 6.4e-76 289.3 579 42.0
Glyma.08G352600 Glycine max HOM05D002628 ORTHO05D002785 1.1e-75 288.5 583 46.3
Nitab4.5_0003758g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.4e-75 287.3 567 45.3
Nitab4.5_0000045g0240 Nicotiana tabacum HOM05D002628 ORTHO05D002785 1.6e-74 284.6 565 43.9
arahy.Tifrunner.gnm1.ann1.23VDWQ Arachis hypogaea HOM05D002628 ORTHO05D002785 4.6e-74 283.1 588 44.0
Medtr7g056603 Medicago truncatula HOM05D002628 ORTHO05D002785 4.6e-74 283.1 579 42.3
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 1.0e-73 282.0 570 46.0
Lalb_Chr03g0041701 Lupinus albus HOM05D002628 ORTHO05D002785 6.7e-73 279.3 576 44.8
Gorai.001G187100 Gossypium raimondii HOM05D002628 ORTHO05D002785 1.6e-71 274.6 525 45.0
EL10Ac7g17849 Beta vulgaris HOM05D002628 ORTHO05D002785 4.8e-71 273.1 569 41.8
AUR62001094 Chenopodium quinoa HOM05D002628 ORTHO05D002785 4.8e-71 273.1 575 43.0
Lj1A87T37 Lonicera japonica HOM05D002628 ORTHO05D002785 6.2e-71 272.7 571 42.2
Glyma.18G169600 Glycine max HOM05D002628 ORTHO05D002785 8.1e-71 272.3 573 45.2
Nn1g07877 Nelumbo nucifera HOM05D002628 ORTHO05D002785 2.4e-70 270.8 531 43.9
TPR.G31107 Trifolium pratense HOM05D002628 ORTHO05D002785 2.6e-69 267.3 580 43.6
Oeu004073.1 Olea europaea HOM05D002628 ORTHO05D002785 4.9e-68 263.1 570 45.8
Lalb_Chr01g0022291 Lupinus albus HOM05D002628 ORTHO05D002785 1.1e-67 261.9 580 43.4
arahy.Tifrunner.gnm1.ann1.82MK2E Arachis hypogaea HOM05D002628 ORTHO05D002785 1.4e-67 261.5 588 42.3
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.8e-65 254.6 579 42.3
Sed0004451 Sechium edule HOM05D002628 ORTHO05D002785 3.0e-65 253.8 404 47.3
Oeu022247.1 Olea europaea HOM05D002628 ORTHO05D002785 1.5e-64 251.5 521 43.4
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 4.8e-63 246.5 569 41.8
CsaV3_7G026060 Cucumis sativus L. HOM05D002628 ORTHO05D002785 6.2e-63 246.1 510 42.4
Glyma.16G093800 Glycine max HOM05D002628 ORTHO05D002785 3.1e-62 243.8 323 54.2
Hund18389 Selenicereus undatus HOM05D002628 ORTHO05D002785 9.0e-62 242.3 524 41.2
Hund05562 Selenicereus undatus HOM05D002628 ORTHO05D002785 4.5e-61 240.0 520 41.2
Actinidia28152 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.2e-58 231.9 402 52.0
Gohir.A07G156950 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.5e-58 230.3 361 49.3
Rhsim13G0045600 Rhododendron simsii HOM05D002628 ORTHO05D002785 7.9e-58 229.2 271 59.0
Carub.0003s2528 Capsella rubella HOM05D002628 ORTHO05D002785 1.8e-57 228.0 511 39.9
DCAR_012651 Daucus carota HOM05D002628 ORTHO05D002785 1.8e-57 228.0 498 43.2
Sed0013250 Sechium edule HOM05D002628 ORTHO05D002785 8.7e-57 225.7 567 38.3
Gohir.D07G163200 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.9e-56 224.6 523 41.5
Carub.0003s2526 Capsella rubella HOM05D002628 ORTHO05D002785 2.5e-56 224.2 510 39.8
Aa31LG8G11310 Aethionema arabicum HOM05D002628 ORTHO05D002785 3.3e-56 223.8 507 42.6
CARHR218580 Cardamine hirsuta HOM05D002628 ORTHO05D002785 3.3e-56 223.8 514 38.9
Sc05g0002110 Simmondsia chinensis HOM05D002628 ORTHO05D002785 2.8e-55 220.7 529 40.1
Peaxi162Scf00517g00636 Petunia axillaris HOM05D002628 ORTHO05D002785 3.7e-55 220.3 524 38.7
PSO675G2169 Papaver somniferum HOM05D002628 ORTHO05D002785 4.8e-55 219.9 531 39.9
CAN.G771.81 Capsicum annuum HOM05D002628 ORTHO05D002785 1.8e-54 218.0 571 37.8
Nitab4.5_0001564g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 1.5e-53 214.9 564 40.6
Haze_24810 Corylus avellana HOM05D002628 ORTHO05D002785 1.0e-52 212.2 261 52.9
AL3G40640 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 1.3e-52 211.8 514 41.4
AUR62008919 Chenopodium quinoa HOM05D002628 ORTHO05D002785 1.7e-52 211.5 570 36.8
Sopen06g034780 Solanum pennellii HOM05D002628 ORTHO05D002785 1.7e-52 211.5 572 37.6
AT3G24870 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 2.2e-52 211.1 516 39.9
Nitab4.5_0002223g0030 Nicotiana tabacum HOM05D002628 ORTHO05D002785 5.0e-52 209.9 567 37.7
PGR083G0125 Punica granatum HOM05D002628 ORTHO05D002785 8.5e-52 209.1 587 41.7
AT3G24880 Arabidopsis thaliana HOM05D002628 ORTHO05D002785 9.3e-51 205.7 518 39.6
Ah.15g093990 Amaranthus hybridus HOM05D002628 ORTHO05D002785 4.6e-50 203.4 450 41.6
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 4.6e-50 203.4 495 37.8
AL9U11010 Arabidopsis lyrata HOM05D002628 ORTHO05D002785 7.9e-50 202.6 500 38.2
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 5.1e-49 199.9 525 38.7
Lj2C1130G3 Lonicera japonica HOM05D002628 ORTHO05D002785 1.9e-48 198.0 582 40.4
Migut.N00620 Erythranthe guttata HOM05D002628 ORTHO05D002785 4.3e-48 196.8 558 41.0
Sp3g22600 Schrenkiella parvula HOM05D002628 ORTHO05D002785 4.3e-48 196.8 520 40.2
SpUn0027_0080 Schrenkiella parvula HOM05D002628 ORTHO05D002785 4.3e-48 196.8 520 40.2
GSVIVG01028685001 Vitis vinifera HOM05D002628 ORTHO05D002785 7.4e-48 196.1 413 41.4
Solyc06g083420.3 Solanum lycopersicum HOM05D002628 ORTHO05D002785 1.4e-46 191.8 567 36.5
CARHR101290 Cardamine hirsuta HOM05D002628 ORTHO05D002785 4.1e-46 190.3 522 39.3
Psat3g145600 Pisum sativum HOM05D002628 ORTHO05D002785 5.3e-46 189.9 579 36.4
THA.LOC104821651 Tarenaya hassleriana HOM05D002628 ORTHO05D002785 1.2e-45 188.7 511 38.9
Oeu023092.1 Olea europaea HOM05D002628 ORTHO05D002785 2.6e-45 187.6 391 41.4
Aa31LG9G4800 Aethionema arabicum HOM05D002628 ORTHO05D002785 3.4e-45 187.2 510 39.4
BcaC06g35765 Brassica carinata HOM05D002628 ORTHO05D002785 2.2e-44 184.5 505 38.8
CAN.G15.8 Capsicum annuum HOM05D002628 ORTHO05D002785 5.5e-43 179.9 356 42.1
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 3.6e-42 177.2 497 37.0
C07p11110 Brassica napus HOM05D002628 ORTHO05D002785 3.9e-41 173.7 506 38.1
Eucgr.K02162 Eucalyptus grandis HOM05D002628 ORTHO05D002785 6.7e-41 172.9 522 39.5
Thhalv10002368m.g Eutrema salsugineum HOM05D002628 ORTHO05D002785 8.8e-41 172.6 511 37.4
BcaB06g26704 Brassica carinata HOM05D002628 ORTHO05D002785 1.5e-40 171.8 518 37.8
Migut.D02520 Erythranthe guttata HOM05D002628 ORTHO05D002785 5.7e-40 169.9 564 38.8
BolC7t41583H Brassica oleracea HOM05D002628 ORTHO05D002785 4.8e-39 166.8 512 37.3
DCAR_018575 Daucus carota HOM05D002628 ORTHO05D002785 3.2e-35 154.1 517 36.9
BraA03t13528Z Brassica rapa HOM05D002628 ORTHO05D002785 7.2e-35 152.9 490 36.5
Psat0s1614g0080 Pisum sativum HOM05D002628 ORTHO05D002785 7.2e-35 152.9 293 43.3
A03p43970 Brassica napus HOM05D002628 ORTHO05D002785 9.4e-35 152.5 490 36.5
BcaB03g16110 Brassica carinata HOM05D002628 ORTHO05D002785 3.0e-33 147.5 504 34.9
Cpa.g.sc8.144 Carica papaya HOM05D002628 ORTHO05D002785 3.9e-33 147.1 263 53.6
BraA07t28522Z Brassica rapa HOM05D002628 ORTHO05D002785 6.7e-33 146.4 500 36.6
A07p07330 Brassica napus HOM05D002628 ORTHO05D002785 1.5e-32 145.2 500 36.6
DCAR_000525 Daucus carota HOM05D002628 ORTHO05D002785 9.7e-32 142.5 498 35.3
Actinidia39757 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.3e-31 142.1 158 58.2
SHI31150 Sapria himalayana HOM05D002628 ORTHO05D002785 8.2e-31 139.4 527 35.1
BolC3t17718H Brassica oleracea HOM05D002628 ORTHO05D002785 1.5e-27 128.6 439 34.9
BcaC01g03251 Brassica carinata HOM05D002628 ORTHO05D002785 3.2e-27 127.5 439 34.9
C03p54320 Brassica napus HOM05D002628 ORTHO05D002785 3.2e-27 127.5 439 34.9
BcaB08g34428 Brassica carinata HOM05D002628 ORTHO05D002785 2.3e-25 121.3 498 34.5
ECA236G2127 Erigeron canadensis HOM05D002628 ORTHO05D002785 1.5e-24 118.6 509 32.8
A04p08930 Brassica napus HOM05D002628 ORTHO05D002785 2.8e-23 114.4 503 31.2
BcaC02g09445 Brassica carinata HOM05D002628 ORTHO05D002785 9.1e-22 109.4 475 30.1
Hma1.2p1_0226F.1_g095630 Hydrangea macrophylla HOM05D002628 ORTHO05D002785 3.5e-21 107.5 188 46.8
C04p42820 Brassica napus HOM05D002628 ORTHO05D002785 1.3e-20 105.5 475 29.9
BolC4t25848H Brassica oleracea HOM05D002628 ORTHO05D002785 1.3e-20 105.5 476 30.0
Glyma.18G167833 Glycine max HOM05D002628 ORTHO05D002785 1.3e-20 105.5 194 45.4
unitig_37.g12887 Utricularia gibba HOM05D002628 ORTHO05D002785 1.4e-17 95.5 352 32.4
Cc01_g16950 Coffea canephora HOM05D002628 ORTHO05D002785 6.8e-17 93.2 145 48.3
unitig_736.g22339 Utricularia gibba HOM05D002628 ORTHO05D002785 7.5e-16 89.7 182 43.4
unitig_46.g18239 Utricularia gibba HOM05D002628 ORTHO05D002785 1.3e-15 89.0 400 30.8
Zm00001eb160300 Zea mays HOM05D002628 ORTHO05D002785 3.7e-15 87.4 514 33.1
Zm00001eb160310 Zea mays HOM05D002628 ORTHO05D002785 6.3e-15 86.7 514 33.1
Gohir.A07G157100 Gossypium hirsutum HOM05D002628 ORTHO05D002785 8.3e-15 86.3 152 47.4
HPP92_000545 Vanilla planifolia HOM05D002628 ORTHO05D002785 1.4e-14 85.5 463 30.9
CDE07G1586 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 1.8e-14 85.1 476 27.9
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 1.2e-13 82.4 456 27.6
SGA_v2.0_scaffold3G01640 Striga asiatica HOM05D002628 ORTHO05D002785 7.7e-13 79.7 371 36.4
BraA04t16589Z Brassica rapa HOM05D002628 ORTHO05D002785 5.0e-12 77.0 353 33.1
ECA248G1308 Erigeron canadensis HOM05D002628 ORTHO05D002785 3.6e-10 70.9 425 31.3
Lsat_1_v5_gn_5_180401 Lactuca sativa HOM05D002628 ORTHO05D002785 3.4e-08 64.3 339 31.0
SGA_v2.0_scaffold6G03236 Striga asiatica HOM05D002628 ORTHO05D002785 5.7e-08 63.5 417 34.1
HanXRQChr01g0015181 Helianthus annuus HOM05D002628 ORTHO05D002785 5.4e-06 57.0 161 36.6


User provided reference genes

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