Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050166 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D043319 6.1e-82 307.4 149 100.0
CSS0004527 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D043319 8.3e-63 243.8 160 79.4
Actinidia26156 Actinidia chinensis HOM05D002874 ORTHO05D003250 3.6e-18 95.5 84 59.5
vmacro19881 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 2.6e-16 89.4 112 48.2
Actinidia06462 Actinidia chinensis HOM05D002874 ORTHO05D003250 4.5e-16 88.6 115 45.2
Dinv24303 Davidia involucrata HOM05D002874 ORTHO05D003250 4.5e-16 88.6 158 40.5
Rhsim05G0106200 Rhododendron simsii HOM05D002874 ORTHO05D003250 2.9e-15 85.9 90 56.7
COL.COLO4_11715 Corchorus olitorius HOM05D002874 ORTHO05D003250 1.1e-11 73.9 48 66.7
BraA03t15313Z Brassica rapa HOM05D002874 ORTHO05D003250 2.5e-11 72.8 34 73.5
Gorai.013G041100 Gossypium raimondii HOM05D002874 ORTHO05D003250 2.5e-11 72.8 48 62.5
THA.LOC104807351 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 2.5e-11 72.8 34 76.5
Gohir.A13G038000 Gossypium hirsutum HOM05D002874 ORTHO05D003250 3.3e-11 72.4 48 62.5
Gohir.D13G036400 Gossypium hirsutum HOM05D002874 ORTHO05D003250 3.3e-11 72.4 48 62.5
Thecc.02G096400 Theobroma cacao HOM05D002874 ORTHO05D003250 9.6e-11 70.9 48 60.4
CARHR242040 Cardamine hirsuta HOM05D002874 ORTHO05D003250 1.3e-10 70.5 64 53.1
BcaNung02905 Brassica carinata HOM05D002874 ORTHO05D003250 1.6e-10 70.1 64 46.9
C07p60060 Brassica napus HOM05D002874 ORTHO05D003250 1.6e-10 70.1 64 46.9
Gohir.D01G006200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 1.6e-10 70.1 45 62.2
Gorai.002G007200 Gossypium raimondii HOM05D002874 ORTHO05D003250 1.6e-10 70.1 45 62.2
Sp7g31670 Schrenkiella parvula HOM05D002874 ORTHO05D003250 2.1e-10 69.7 67 49.3
A03p62460 Brassica napus HOM05D002874 ORTHO05D003250 2.8e-10 69.3 54 50.0
Gohir.A01G006100 Gossypium hirsutum HOM05D002874 ORTHO05D003250 2.8e-10 69.3 45 62.2
Solyc01g103970.4 Solanum lycopersicum HOM05D002874 ORTHO05D003250 2.8e-10 69.3 59 50.8
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 3.7e-10 68.9 48 60.4
BcaNung04335 Brassica carinata HOM05D002874 ORTHO05D003250 4.8e-10 68.6 43 58.1
PGSC0003DMG400023801 Solanum tuberosum HOM05D002874 ORTHO05D003250 4.8e-10 68.6 61 50.8
TWI75G1683 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 6.2e-10 68.2 79 43.0
Nitab4.5_0001744g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.1e-09 67.4 50 54.0
Peaxi162Scf00011g00065 Petunia axillaris HOM05D002874 ORTHO05D003250 1.1e-09 67.4 39 64.1
Thhalv10026077m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 1.4e-09 67.0 71 46.5
Carub.0007s0648 Capsella rubella HOM05D002874 ORTHO05D003250 6.9e-09 64.7 45 55.6
Cpa.g.sc62.42 Carica papaya HOM05D002874 ORTHO05D003250 6.9e-09 64.7 61 45.9
Cc02_g22760 Coffea canephora HOM05D002874 ORTHO05D003250 9.0e-09 64.3 32 71.9
A01p04460 Brassica napus HOM05D002874 ORTHO05D003250 1.2e-08 63.9 59 40.7
BraA01t00433Z Brassica rapa HOM05D002874 ORTHO05D003250 1.2e-08 63.9 59 40.7
Manes.15G142950 Manihot esculenta HOM05D002874 ORTHO05D003250 1.2e-08 63.9 66 47.0
DCAR_006694 Daucus carota HOM05D002874 ORTHO05D003250 1.5e-08 63.5 48 54.2
AL7G17480 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 2.6e-08 62.8 58 48.3
Potri.004G143900 Populus trichocarpa HOM05D002874 ORTHO05D003250 2.6e-08 62.8 59 45.8
C01p04850 Brassica napus HOM05D002874 ORTHO05D003250 3.4e-08 62.4 71 40.8
Rhsim07G0166200 Rhododendron simsii HOM05D002874 ORTHO05D003250 3.4e-08 62.4 29 75.9
Sabra04G0095400 Salix brachista HOM05D002874 ORTHO05D003250 3.4e-08 62.4 32 68.8
BolC1t00469H Brassica oleracea HOM05D002874 ORTHO05D003250 4.5e-08 62.0 71 40.8
Ciclev10029827m.g Citrus clementina HOM05D002874 ORTHO05D003250 4.5e-08 62.0 74 45.9
Dinv24301 Davidia involucrata HOM05D002874 ORTHO05D003250 4.5e-08 62.0 74 43.2
Eucgr.I01172 Eucalyptus grandis HOM05D002874 ORTHO05D003250 4.5e-08 62.0 33 63.6
Actinidia39025 Actinidia chinensis HOM05D002874 ORTHO05D003250 5.8e-08 61.6 77 45.5
Ah.05g178590 Amaranthus hybridus HOM05D002874 ORTHO05D003250 5.8e-08 61.6 32 68.8
Nn1g08358 Nelumbo nucifera HOM05D002874 ORTHO05D003250 5.8e-08 61.6 33 60.6
ECA240G2758 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.6e-08 61.2 96 38.5
Pp3c4_27320 Physcomitrium patens HOM05D002874 ORTHO05D003250 7.6e-08 61.2 42 47.6
Atru.chr5.2783 Acer truncatum HOM05D002874 ORTHO05D003250 9.9e-08 60.8 40 50.0
Atru.chr5.2798 Acer truncatum HOM05D002874 ORTHO05D003250 9.9e-08 60.8 40 50.0
AT4G33940 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 9.9e-08 60.8 57 45.6
Hma1.2p1_0217F.1_g092230 Hydrangea macrophylla HOM05D002874 ORTHO05D003250 1.3e-07 60.5 60 51.7
Hma1.2p1_2221F.1_g317360 Hydrangea macrophylla HOM05D002874 ORTHO05D003250 1.3e-07 60.5 60 51.7
vmacro05120 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 1.7e-07 60.1 130 31.5
Cc02_g22750 Coffea canephora HOM05D002874 ORTHO05D003250 2.9e-07 59.3 33 57.6
Rhsim07G0166100 Rhododendron simsii HOM05D002874 ORTHO05D003250 2.9e-07 59.3 74 39.2
SEGI_08350 Sequoiadendron giganteum HOM05D002874 ORTHO05D003250 2.9e-07 59.3 34 50.0
SEGI_23344 Sequoiadendron giganteum HOM05D002874 ORTHO05D003250 2.9e-07 59.3 34 50.0
HanXRQChr06g0181251 Helianthus annuus HOM05D002874 ORTHO05D003250 3.8e-07 58.9 42 52.4
CSS0000541 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 4.9e-07 58.5 93 40.9
CSS0036415 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 4.9e-07 58.5 93 40.9
CAN.G11.39 Capsicum annuum HOM05D002874 ORTHO05D003250 4.9e-07 58.5 49 55.1
Hma1.2p1_0349F.1_g132050 Hydrangea macrophylla HOM05D002874 ORTHO05D003250 4.9e-07 58.5 31 67.7
Lj5P254T61 Lonicera japonica HOM05D002874 ORTHO05D003250 4.9e-07 58.5 45 51.1
Nitab4.5_0008061g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 4.9e-07 58.5 44 52.3
Aqoxy6G00106 Aquilegia oxysepala HOM05D002874 ORTHO05D003250 6.4e-07 58.2 29 62.1
MSTRG.3584 Avicennia marina HOM05D002874 ORTHO05D003250 6.4e-07 58.2 74 39.2
Nitab4.5_0001744g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 8.4e-07 57.8 62 40.3
Nitab4.5_0007966g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 8.4e-07 57.8 42 54.8
Solyc01g103980.4 Solanum lycopersicum HOM05D002874 ORTHO05D003250 8.4e-07 57.8 91 35.2
TAR628G0883 Trochodendron aralioides HOM05D002874 ORTHO05D003250 8.4e-07 57.8 30 56.7
MSTRG.16509 Avicennia marina HOM05D002874 ORTHO05D003250 1.1e-06 57.4 159 30.2
Oeu032245.1 Olea europaea HOM05D002874 ORTHO05D003250 1.1e-06 57.4 43 53.5
PGR142G2581 Punica granatum HOM05D002874 ORTHO05D003250 1.1e-06 57.4 60 40.0
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 1.4e-06 57.0 42 52.4
CANSAT56G0379 Cannabis sativa HOM05D002874 ORTHO05D003250 1.9e-06 56.6 28 64.3
CANSAT56G0446 Cannabis sativa HOM05D002874 ORTHO05D003250 1.9e-06 56.6 28 64.3
Migut.B00815 Erythranthe guttata HOM05D002874 ORTHO05D003250 1.9e-06 56.6 52 46.2
Sopen01g046380 Solanum pennellii HOM05D002874 ORTHO05D003250 1.9e-06 56.6 89 38.2
Peaxi162Scf00003g03946 Petunia axillaris HOM05D002874 ORTHO05D003250 2.4e-06 56.2 45 48.9
SMO347G0660 Selaginella moellendorffii HOM05D002874 ORTHO05D003250 2.4e-06 56.2 30 56.7
ATR0709G075 Amborella trichopoda HOM05D002874 ORTHO05D003250 3.2e-06 55.8 29 62.1
Dinv24302 Davidia involucrata HOM05D002874 ORTHO05D003250 3.2e-06 55.8 78 41.0
Nitab4.5_0008546g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 3.2e-06 55.8 62 37.1
SGA_v2.0_scaffold110G31336 Striga asiatica HOM05D002874 ORTHO05D003250 4.2e-06 55.5 73 41.1
Duzib211G0598 Durio zibethinus HOM05D002874 ORTHO05D003250 5.5e-06 55.1 30 60.0
Lsat_1_v5_gn_7_78981 Lactuca sativa HOM05D002874 ORTHO05D003250 5.5e-06 55.1 61 42.6
Mapoly0062s0090 Marchantia polymorpha HOM05D002874 ORTHO05D003250 5.5e-06 55.1 33 54.5
MSTRG.1570 Avicennia marina HOM05D002874 ORTHO05D003250 7.1e-06 54.7 29 62.1
EL10Ac1g00137 Beta vulgaris HOM05D002874 ORTHO05D003250 7.1e-06 54.7 32 59.4
PGSC0003DMG400023800 Solanum tuberosum HOM05D002874 ORTHO05D003250 7.1e-06 54.7 92 32.6
Thecc.08G192600 Theobroma cacao HOM05D002874 ORTHO05D003250 7.1e-06 54.7 30 60.0
HPP92_003141 Vanilla planifolia HOM05D002874 ORTHO05D003250 7.1e-06 54.7 30 53.3
Gohir.A05G251600 Gossypium hirsutum HOM05D002874 ORTHO05D003250 9.3e-06 54.3 30 60.0
Gohir.D05G252200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 9.3e-06 54.3 30 60.0
Gorai.009G265000 Gossypium raimondii HOM05D002874 ORTHO05D003250 9.3e-06 54.3 30 60.0


User provided reference genes

Program Settings