Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.6e-175 619.4 338 100.0
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 6.7e-161 570.9 338 92.0
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 2.6e-160 568.9 338 92.3
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.0e-157 559.3 338 90.8
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.0e-157 559.3 338 91.4
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.0e-156 557.0 338 89.9
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.7e-156 556.2 338 91.1
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 2.9e-156 555.4 338 91.4
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 5.0e-156 554.7 338 90.5
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.5e-155 552.4 339 87.6
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.5e-155 552.4 339 90.6
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 7.2e-155 550.8 338 89.3
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.6e-154 549.7 338 89.3
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.1e-154 549.3 338 89.9
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 3.6e-154 548.5 338 89.6
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 6.1e-154 547.7 338 84.3
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 1.0e-153 547.0 339 89.4
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.4e-153 546.6 338 88.2
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 3.9e-153 545.0 338 89.9
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 3.9e-153 545.0 338 88.2
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 5.2e-153 544.7 338 88.5
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 5.2e-153 544.7 338 88.5
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 6.7e-153 544.3 338 89.3
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 8.8e-153 543.9 339 89.1
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.1e-152 543.5 338 87.6
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.1e-152 543.5 338 87.6
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.6e-152 542.3 338 88.2
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 4.4e-152 541.6 338 88.8
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 5.7e-152 541.2 349 87.1
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.3e-151 540.0 338 87.0
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.3e-151 540.0 339 88.5
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.7e-151 539.7 337 88.1
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.7e-151 539.7 337 88.1
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 2.2e-151 539.3 338 87.9
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 2.2e-151 539.3 338 87.6
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.8e-151 538.9 341 87.7
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 4.8e-151 538.1 339 87.9
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 4.8e-151 538.1 338 87.6
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.1e-150 537.0 365 83.0
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 3.1e-150 535.4 339 88.5
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 3.1e-150 535.4 338 89.1
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 5.3e-150 534.6 354 85.9
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.0e-149 532.7 338 86.7
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 2.6e-149 532.3 340 86.5
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.5e-149 531.9 338 87.9
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 4.5e-149 531.6 338 86.7
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.7e-148 529.6 356 84.6
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.7e-148 529.6 356 84.6
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.9e-148 528.9 338 86.4
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.9e-148 528.9 338 86.4
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 2.9e-148 528.9 338 86.4
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 2.9e-148 528.9 338 86.4
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 3.8e-148 528.5 339 87.0
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 3.8e-148 528.5 338 86.4
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 5.0e-148 528.1 338 85.8
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 8.5e-148 527.3 339 86.7
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 8.5e-148 527.3 339 85.8
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-147 525.8 340 87.6
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 3.2e-147 525.4 339 84.1
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 4.2e-147 525.0 338 87.0
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 5.5e-147 524.6 339 84.4
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 5.5e-147 524.6 339 84.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 9.4e-147 523.9 338 86.4
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.2e-146 523.5 339 85.8
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.6e-146 523.1 323 89.8
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.6e-146 523.1 339 85.0
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 2.7e-146 522.3 338 84.6
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 3.6e-146 521.9 339 85.5
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 3.6e-146 521.9 340 87.1
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 8.0e-146 520.8 339 85.3
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 6.7e-145 517.7 331 88.8
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.0e-144 516.2 359 81.9
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.6e-144 515.8 338 82.2
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.3e-144 515.4 338 83.4
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 7.5e-144 514.2 339 84.1
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.3e-143 513.5 352 82.4
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 6.3e-143 511.1 372 79.3
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.4e-142 510.0 338 86.1
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.2e-141 506.9 340 81.8
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 2.0e-141 506.1 377 78.8
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 4.5e-141 505.0 348 81.9
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 7.7e-141 504.2 346 81.8
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.0e-140 503.8 338 84.3
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 3.8e-140 501.9 339 83.2
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 3.8e-140 501.9 339 83.2
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 3.8e-140 501.9 338 83.4
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 5.0e-140 501.5 331 84.6
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 5.0e-140 501.5 338 79.0
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.5e-139 500.0 338 82.8
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 5.5e-139 498.0 332 84.0
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 2.1e-138 496.1 348 80.7
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.7e-138 495.7 338 81.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 8.0e-138 494.2 338 81.7
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 4.0e-137 491.9 322 86.0
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.5e-136 490.0 322 85.7
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 3.4e-136 488.8 338 79.0
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 3.4e-136 488.8 325 84.9
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 3.4e-136 488.8 325 84.9
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.3e-135 486.9 350 80.0
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.4e-134 482.6 368 75.8
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.9e-131 473.0 338 74.0
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.9e-131 473.0 338 80.8
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 3.2e-131 472.2 306 87.6
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.7e-130 469.2 338 77.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.3e-127 458.0 366 74.0
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.3e-127 458.0 366 74.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.0e-124 450.7 339 77.9
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 1.1e-123 447.2 334 79.6
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 3.6e-122 442.2 353 72.2
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 1.4e-121 440.3 284 86.6
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 5.6e-115 418.3 516 54.1
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 5.6e-115 418.3 275 88.0
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.2e-111 406.4 229 87.3
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.5e-107 391.0 340 72.4
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.0e-104 383.3 256 88.7
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 4.4e-104 382.1 321 73.5
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 7.1e-102 374.8 321 72.6
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.8e-97 360.1 279 76.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.5e-96 357.1 338 65.4
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.4e-95 351.3 338 65.7
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 3.4e-88 329.3 382 47.6
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.1e-81 307.8 147 98.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 2.2e-79 300.1 331 51.7
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.5e-67 260.0 180 75.6
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 3.8e-63 246.1 212 75.9
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 6.0e-61 238.8 330 44.8
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.2e-53 214.5 116 87.1
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 2.6e-48 196.8 166 70.5
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.4e-43 178.7 91 100.0
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 3.6e-37 159.8 89 93.3
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.8e-36 157.5 89 93.3
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.9e-23 113.6 84 98.8
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.1e-21 107.5 64 89.1
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 2.4e-17 94.0 201 28.9
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.7e-15 87.8 276 27.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.9e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.9e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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