Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.9e-82 308.5 159 100.0
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.5e-67 258.1 162 85.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.6e-58 227.6 145 82.8
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.2e-51 206.8 162 72.8
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 4.9e-45 184.9 145 66.2
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.9e-45 184.9 143 67.1
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.6e-43 179.9 141 66.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.0e-42 174.9 139 63.3
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.1e-41 173.7 139 63.3
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.1e-41 173.7 140 64.3
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 2.5e-41 172.6 134 64.9
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.3e-41 171.8 139 63.3
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.2e-40 170.2 139 62.6
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.6e-40 169.9 154 59.7
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 2.1e-40 169.5 133 66.2
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.8e-40 169.1 139 62.6
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.1e-39 167.2 143 59.4
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 4.0e-39 165.2 144 59.7
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.8e-38 161.4 149 56.4
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.5e-38 161.0 153 56.9
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 7.5e-38 161.0 114 71.1
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 2.2e-37 159.5 134 59.7
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 9.2e-36 154.1 125 63.2
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 9.2e-36 154.1 146 58.9
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 9.2e-36 154.1 159 54.1
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.2e-35 153.7 147 57.1
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.7e-35 152.5 141 59.6
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 3.5e-35 152.1 125 63.2
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 7.8e-35 151.0 155 53.5
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.7e-34 149.8 139 58.3
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 3.9e-34 148.7 165 52.7
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 3.9e-34 148.7 142 56.3
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 8.6e-34 147.5 125 59.2
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.5e-33 146.7 131 59.5
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.5e-33 146.7 135 57.0
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.3e-33 145.6 132 58.3
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 5.6e-33 144.8 143 55.9
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 7.3e-33 144.4 141 55.3
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.2e-32 143.7 136 55.9
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 3.6e-32 142.1 117 63.2
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 6.2e-32 141.4 145 53.8
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 6.2e-32 141.4 130 56.9
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 6.2e-32 141.4 161 51.6
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.4e-31 140.2 129 57.4
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.3e-31 139.4 139 56.1
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.1e-31 139.0 128 58.6
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.0e-31 138.7 142 53.5
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 6.8e-31 137.9 136 52.2
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 8.9e-31 137.5 153 51.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.2e-30 137.1 125 54.4
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.2e-30 137.1 142 56.3
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.0e-30 136.3 143 51.7
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.0e-30 136.3 136 52.9
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 2.0e-30 136.3 163 47.9
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 3.4e-30 135.6 134 54.5
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 3.4e-30 135.6 146 52.7
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 3.4e-30 135.6 141 52.5
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 4.4e-30 135.2 128 50.0
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.4e-30 135.2 131 56.5
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 5.8e-30 134.8 146 51.4
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 7.6e-30 134.4 146 52.7
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 9.9e-30 134.0 130 56.9
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 9.9e-30 134.0 151 51.7
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.3e-29 133.7 142 51.4
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.9e-29 132.5 142 51.4
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.9e-29 132.5 143 48.3
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.9e-29 132.5 89 75.3
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 2.9e-29 132.5 123 56.1
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.7e-29 132.1 148 52.7
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 3.7e-29 132.1 131 57.3
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.9e-29 131.7 141 52.5
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 8.4e-29 131.0 140 51.4
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.4e-28 130.2 129 52.7
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 2.4e-28 129.4 141 52.5
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.4e-28 129.4 146 49.3
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 3.2e-28 129.0 170 44.7
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 7.1e-28 127.9 153 51.0
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 7.1e-28 127.9 138 51.4
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 9.2e-28 127.5 159 47.8
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 9.2e-28 127.5 159 47.8
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 9.2e-28 127.5 145 49.7
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-27 127.1 140 50.7
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-27 127.1 150 50.0
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-27 127.1 157 47.8
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.2e-27 127.1 160 49.4
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.6e-27 126.7 148 50.7
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.6e-27 126.7 141 51.8
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.1e-27 126.3 145 49.0
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 2.7e-27 125.9 160 46.9
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.7e-27 125.9 133 51.1
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.5e-27 125.6 139 49.6
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 3.5e-27 125.6 151 49.0
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 4.6e-27 125.2 140 48.6
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 4.6e-27 125.2 128 53.1
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 7.8e-27 124.4 126 54.8
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 7.8e-27 124.4 158 44.9
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.7e-26 123.2 161 46.0
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 6.6e-26 121.3 153 47.1
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 6.6e-26 121.3 144 47.9
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 8.6e-26 120.9 132 48.5
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.3e-25 119.0 119 55.5
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.3e-25 119.0 103 59.2
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 4.3e-25 118.6 152 46.1
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 4.3e-25 118.6 152 46.1
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 5.6e-25 118.2 89 66.3
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 9.6e-25 117.5 162 43.8
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-24 117.1 141 48.2
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.6e-24 116.7 162 46.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 2.8e-24 115.9 144 47.2
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 3.6e-24 115.5 120 50.0
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.6e-24 115.5 88 68.2
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 3.6e-24 115.5 104 53.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.1e-23 114.0 89 62.9
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 8.9e-23 110.9 138 47.8
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 8.9e-23 110.9 138 47.8
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 8.9e-23 110.9 138 47.8
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.0e-22 109.8 107 56.1
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 2.6e-22 109.4 148 43.2
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 3.4e-22 109.0 131 46.6
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.4e-22 109.0 148 43.2
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.2e-21 106.3 150 41.3
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.2e-21 106.3 128 44.5
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 2.2e-21 106.3 128 44.5
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.9e-21 105.9 91 56.0
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 2.9e-21 105.9 120 51.7
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.9e-21 105.1 131 45.8
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 4.9e-21 105.1 120 51.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 3.2e-20 102.4 75 69.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 9.3e-20 100.9 146 39.7
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.7e-19 99.4 131 45.8
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 6.0e-19 98.2 81 60.5
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-18 97.1 112 49.1
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.3e-18 96.3 129 46.5
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 5.1e-18 95.1 158 39.2
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 6.6e-18 94.7 137 41.6
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 6.6e-18 94.7 117 45.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.1e-17 94.0 89 50.6
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.9e-17 93.2 118 43.2
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 2.5e-17 92.8 145 41.4
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.5e-17 92.8 94 51.1
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 2.5e-17 92.8 89 50.6
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.1e-15 85.9 86 48.8
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 4.0e-15 85.5 95 49.5
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.5e-14 83.6 142 40.1
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 2.6e-14 82.8 120 42.5
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.4e-14 82.4 128 41.4
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 1.7e-13 80.1 126 42.1
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.3e-10 69.7 64 53.1
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 3.0e-10 69.3 81 44.4
Solyc11g007810.3 Solanum lycopersicum HOM05D004569 ORTHO05D005333 1.9e-09 66.6 74 47.3
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.5e-09 66.2 91 44.0
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 4.3e-09 65.5 141 32.6
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.3e-08 63.9 61 54.1
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.6e-08 63.5 71 50.7
Dinv14042 Davidia involucrata HOM05D002297 ORTHO05D002385 9.0e-07 57.8 42 64.3
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.8e-06 55.1 123 33.3


User provided reference genes

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