Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049011 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 9.6e-56 219.9 112 100.0
CSS0001341 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 1.8e-49 199.1 123 87.0
Potri.001G289001 Populus trichocarpa HOM05D004093 ORTHO05D004981 7.4e-48 193.7 123 83.7
GSVIVG01037036001 Vitis vinifera HOM05D004093 ORTHO05D004981 8.2e-47 190.3 123 81.3
Rhsim11G0149600 Rhododendron simsii HOM05D004093 ORTHO05D004981 1.1e-46 189.9 121 82.6
Manes.07G052300 Manihot esculenta HOM05D004093 ORTHO05D004981 1.4e-46 189.5 123 82.1
Sabra16G0180800 Salix brachista HOM05D004093 ORTHO05D004981 1.4e-46 189.5 123 82.1
SGA_v2.0_scaffold219G42544 Striga asiatica HOM05D004093 ORTHO05D004981 1.2e-45 186.4 121 81.8
Dinv16064 Davidia involucrata HOM05D004093 ORTHO05D004981 1.5e-45 186.0 123 78.9
vmacro01935 Vaccinium macrocarpon HOM05D004093 ORTHO05D004981 1.5e-45 186.0 120 82.5
Dinv09528 Davidia involucrata HOM05D004093 ORTHO05D004981 2.0e-45 185.7 121 79.3
MSTRG.27768 Avicennia marina HOM05D004093 ORTHO05D004981 2.6e-45 185.3 120 80.8
CiPaw.05G021800 Carya illinoinensis HOM05D004093 ORTHO05D004981 2.6e-45 185.3 123 79.7
Oeu018200.1 Olea europaea HOM05D004093 ORTHO05D004981 2.6e-45 185.3 121 79.3
Cfa004713 Carpinus fangiana HOM05D004093 ORTHO05D004981 4.5e-45 184.5 123 78.0
Potri.009G084300 Populus trichocarpa HOM05D004093 ORTHO05D004981 4.5e-45 184.5 122 79.5
RcHm_v2.0_Chr6g0247831 Rosa chinensis HOM05D004093 ORTHO05D004981 4.5e-45 184.5 123 78.0
Haze_10324 Corylus avellana HOM05D004093 ORTHO05D004981 5.9e-45 184.1 123 78.0
Prupe.8G151800 Prunus persica HOM05D004093 ORTHO05D004981 5.9e-45 184.1 123 78.0
CiPaw.06G163100 Carya illinoinensis HOM05D004093 ORTHO05D004981 7.6e-45 183.7 123 80.5
VMungo0251G2341 Vigna mungo HOM05D004093 ORTHO05D004981 7.6e-45 183.7 121 80.2
AUR62013810 Chenopodium quinoa HOM05D004093 ORTHO05D004981 1.0e-44 183.3 121 80.2
MD10G1112200 Malus domestica HOM05D004093 ORTHO05D004981 1.0e-44 183.3 123 77.2
AUR62023347 Chenopodium quinoa HOM05D004093 ORTHO05D004981 1.3e-44 183.0 121 80.2
TWI14G0771 Tripterygium wilfordii HOM05D004093 ORTHO05D004981 1.7e-44 182.6 123 76.4
Actinidia04397 Actinidia chinensis HOM05D004093 ORTHO05D004981 2.2e-44 182.2 123 78.0
PGR119G0904 Punica granatum HOM05D004093 ORTHO05D004981 2.2e-44 182.2 121 80.2
Hma1.2p1_1758F.1_g301170 Hydrangea macrophylla HOM05D004093 ORTHO05D004981 2.9e-44 181.8 118 81.4
EL10Ac1g00697 Beta vulgaris HOM05D004093 ORTHO05D004981 3.8e-44 181.4 116 81.0
Eucgr.I02505 Eucalyptus grandis HOM05D004093 ORTHO05D004981 3.8e-44 181.4 123 77.2
Glyma.05G236700 Glycine max HOM05D004093 ORTHO05D004981 3.8e-44 181.4 121 79.3
Migut.N01121 Erythranthe guttata HOM05D004093 ORTHO05D004981 5.0e-44 181.0 121 78.5
FvH4_2g03040 Fragaria vesca HOM05D004093 ORTHO05D004981 5.0e-44 181.0 123 76.4
FAN24G1787 Fragaria x ananassa HOM05D004093 ORTHO05D004981 5.0e-44 181.0 123 76.4
FAN27G3135 Fragaria x ananassa HOM05D004093 ORTHO05D004981 5.0e-44 181.0 123 76.4
QL11p028820 Quercus lobata HOM05D004093 ORTHO05D004981 5.0e-44 181.0 121 78.5
FAN15G0664 Fragaria x ananassa HOM05D004093 ORTHO05D004981 6.5e-44 180.6 121 76.9
Phvul.011G054700 Phaseolus vulgaris HOM05D004093 ORTHO05D004981 8.5e-44 180.3 121 79.3
ClCG10G009970 Citrullus lanatus HOM05D004093 ORTHO05D004981 1.1e-43 179.9 121 79.3
Phvul.002G318600 Phaseolus vulgaris HOM05D004093 ORTHO05D004981 1.1e-43 179.9 121 77.7
Thecc.02G031600 Theobroma cacao HOM05D004093 ORTHO05D004981 1.1e-43 179.9 123 78.9
Ah.05g177500 Amaranthus hybridus HOM05D004093 ORTHO05D004981 1.4e-43 179.5 123 77.2
MELO3C018029.2 Cucumis melo HOM05D004093 ORTHO05D004981 1.4e-43 179.5 121 79.3
CANSAT25G3849 Cannabis sativa HOM05D004093 ORTHO05D004981 1.9e-43 179.1 117 79.5
CsaV3_4G000020 Cucumis sativus L. HOM05D004093 ORTHO05D004981 1.9e-43 179.1 121 79.3
Lalb_Chr16g0387791 Lupinus albus HOM05D004093 ORTHO05D004981 2.5e-43 178.7 118 79.7
AL7G17710 Arabidopsis lyrata HOM05D004093 ORTHO05D004981 3.2e-43 178.3 123 74.8
Aa31sc178G40 Aethionema arabicum HOM05D004093 ORTHO05D004981 4.2e-43 177.9 123 74.8
Ca_17297_v3 Cicer arietinum L. HOM05D004093 ORTHO05D004981 4.2e-43 177.9 121 77.7
Lsat_1_v5_gn_9_113901 Lactuca sativa HOM05D004093 ORTHO05D004981 4.2e-43 177.9 123 73.2
Nitab4.5_0000772g0040 Nicotiana tabacum HOM05D004093 ORTHO05D004981 4.2e-43 177.9 120 78.3
Nitab4.5_0010657g0010 Nicotiana tabacum HOM05D004093 ORTHO05D004981 4.2e-43 177.9 120 78.3
Oeu037299.1 Olea europaea HOM05D004093 ORTHO05D004981 4.2e-43 177.9 118 80.5
arahy.Tifrunner.gnm1.ann1.14EEYB Arachis hypogaea HOM05D004093 ORTHO05D004981 5.5e-43 177.6 121 76.9
AT4G33760 Arabidopsis thaliana HOM05D004093 ORTHO05D004981 9.3e-43 176.8 123 74.0
Carub.0007s0667 Capsella rubella HOM05D004093 ORTHO05D004981 9.3e-43 176.8 123 74.0
CARHR241850 Cardamine hirsuta HOM05D004093 ORTHO05D004981 9.3e-43 176.8 121 75.2
COL.COLO4_17799 Corchorus olitorius HOM05D004093 ORTHO05D004981 9.3e-43 176.8 121 76.9
PSO210G2081 Papaver somniferum HOM05D004093 ORTHO05D004981 9.3e-43 176.8 119 76.5
Sed0024148 Sechium edule HOM05D004093 ORTHO05D004981 9.3e-43 176.8 121 76.9
DCAR_021934 Daucus carota HOM05D004093 ORTHO05D004981 1.2e-42 176.4 120 77.5
TAR159G0001 Trochodendron aralioides HOM05D004093 ORTHO05D004981 1.2e-42 176.4 123 76.4
Atru.chr5.2252 Acer truncatum HOM05D004093 ORTHO05D004981 1.6e-42 176.0 123 75.6
BcaC09g52186 Brassica carinata HOM05D004093 ORTHO05D004981 1.6e-42 176.0 123 74.8
A01p04580 Brassica napus HOM05D004093 ORTHO05D004981 1.6e-42 176.0 123 74.8
C01p04970 Brassica napus HOM05D004093 ORTHO05D004981 1.6e-42 176.0 123 74.8
BolC1t00478H Brassica oleracea HOM05D004093 ORTHO05D004981 1.6e-42 176.0 123 74.8
BraA03t15310Z Brassica rapa HOM05D004093 ORTHO05D004981 1.6e-42 176.0 123 74.8
Medtr4g120810 Medicago truncatula HOM05D004093 ORTHO05D004981 1.6e-42 176.0 121 76.9
PSO447G0184 Papaver somniferum HOM05D004093 ORTHO05D004981 1.6e-42 176.0 121 75.2
TPR.G32673 Trifolium pratense HOM05D004093 ORTHO05D004981 1.6e-42 176.0 121 76.9
HanXRQChr03g0069101 Helianthus annuus HOM05D004093 ORTHO05D004981 2.1e-42 175.6 123 74.0
BcaNung04674 Brassica carinata HOM05D004093 ORTHO05D004981 2.7e-42 175.3 123 74.8
TWI59G0012 Tripterygium wilfordii HOM05D004093 ORTHO05D004981 2.7e-42 175.3 123 74.0
unitig_62.g23638 Utricularia gibba HOM05D004093 ORTHO05D004981 2.7e-42 175.3 118 79.7
BcaC01g00967 Brassica carinata HOM05D004093 ORTHO05D004981 3.6e-42 174.9 123 74.0
A08p17440 Brassica napus HOM05D004093 ORTHO05D004981 3.6e-42 174.9 123 74.0
C03p86430 Brassica napus HOM05D004093 ORTHO05D004981 3.6e-42 174.9 123 74.0
BolC3t20936H Brassica oleracea HOM05D004093 ORTHO05D004981 3.6e-42 174.9 123 74.0
Solyc01g106740.4 Solanum lycopersicum HOM05D004093 ORTHO05D004981 3.6e-42 174.9 120 76.7
Medtr8g104740 Medicago truncatula HOM05D004093 ORTHO05D004981 4.6e-42 174.5 121 76.0
A02p41650 Brassica napus HOM05D004093 ORTHO05D004981 6.1e-42 174.1 123 74.8
Thhalv10024609m.g Eutrema salsugineum HOM05D004093 ORTHO05D004981 6.1e-42 174.1 121 75.2
ECA240G1647 Erigeron canadensis HOM05D004093 ORTHO05D004981 7.9e-42 173.7 123 72.4
A08p17410 Brassica napus HOM05D004093 ORTHO05D004981 1.0e-41 173.3 121 74.4
CAN.G606.83 Capsicum annuum HOM05D004093 ORTHO05D004981 1.0e-41 173.3 120 75.8
Gohir.A01G180900 Gossypium hirsutum HOM05D004093 ORTHO05D004981 1.0e-41 173.3 120 77.5
PGSC0003DMG402005133 Solanum tuberosum HOM05D004093 ORTHO05D004981 1.0e-41 173.3 120 75.8
THA.LOC104807205 Tarenaya hassleriana HOM05D004093 ORTHO05D004981 1.3e-41 172.9 120 74.2
BcaB03g11876 Brassica carinata HOM05D004093 ORTHO05D004981 1.8e-41 172.6 123 74.0
Sp7g31500 Schrenkiella parvula HOM05D004093 ORTHO05D004981 1.8e-41 172.6 123 73.2
HanXRQChr16g0510261 Helianthus annuus HOM05D004093 ORTHO05D004981 2.3e-41 172.2 120 72.5
Sabra09G0065000 Salix brachista HOM05D004093 ORTHO05D004981 2.3e-41 172.2 143 68.5
Sopen01g049060 Solanum pennellii HOM05D004093 ORTHO05D004981 2.3e-41 172.2 120 75.8
Duzib052G0943 Durio zibethinus HOM05D004093 ORTHO05D004981 3.0e-41 171.8 121 76.0
Sed0011100 Sechium edule HOM05D004093 ORTHO05D004981 3.9e-41 171.4 119 75.6
Lj4g0018571 Lotus japonicus HOM05D004093 ORTHO05D004981 8.7e-41 170.2 118 76.3
Medtr1g113700 Medicago truncatula HOM05D004093 ORTHO05D004981 8.7e-41 170.2 128 71.1
ATR0767G039 Amborella trichopoda HOM05D004093 ORTHO05D004981 1.5e-40 169.5 119 74.8
Cc02_g20210 Coffea canephora HOM05D004093 ORTHO05D004981 1.9e-40 169.1 119 73.9
Os01g0153400 Oryza sativa ssp. japonica HOM05D004093 ORTHO05D004981 1.9e-40 169.1 121 69.4
MBI16_g34665_MAGBIO Magnolia biondii HOM05D004093 ORTHO05D004981 2.5e-40 168.7 119 73.9
Gohir.D01G172000 Gossypium hirsutum HOM05D004093 ORTHO05D004981 5.7e-40 167.5 120 75.8
Gorai.002G213600 Gossypium raimondii HOM05D004093 ORTHO05D004981 5.7e-40 167.5 120 75.8
ECA233G6085 Erigeron canadensis HOM05D004093 ORTHO05D004981 9.7e-40 166.8 127 68.5
Aqoxy2G01432 Aquilegia oxysepala HOM05D004093 ORTHO05D004981 1.7e-39 166.0 118 74.6
BraA01t00441Z Brassica rapa HOM05D004093 ORTHO05D004981 3.7e-39 164.9 144 64.6
Aqoxy7G02734 Aquilegia oxysepala HOM05D004093 ORTHO05D004981 4.8e-39 164.5 118 73.7
Zm00001eb124020 Zea mays HOM05D004093 ORTHO05D004981 8.2e-39 163.7 119 68.9
SEGI_06015 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 1.4e-38 162.9 119 71.4
SEGI_18816 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 1.4e-38 162.9 119 71.4
CDE07G1203 Ceratophyllum demersum HOM05D004093 ORTHO05D004981 1.8e-38 162.5 123 69.1
C09p10190 Brassica napus HOM05D004093 ORTHO05D004981 3.1e-38 161.8 131 68.7
SEGI_31310 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 5.3e-38 161.0 122 68.9
BcaC04g23281 Brassica carinata HOM05D004093 ORTHO05D004981 9.1e-38 160.2 126 70.6
Medtr4g052070 Medicago truncatula HOM05D004093 ORTHO05D004981 1.5e-37 159.5 122 71.3
C04p37220 Brassica napus HOM05D004093 ORTHO05D004981 3.4e-37 158.3 139 65.5
CDE04G3016 Ceratophyllum demersum HOM05D004093 ORTHO05D004981 4.5e-37 157.9 123 68.3
HPP92_001209 Vanilla planifolia HOM05D004093 ORTHO05D004981 4.5e-37 157.9 117 68.4
Mapoly0029s0082 Marchantia polymorpha HOM05D004093 ORTHO05D004981 2.5e-35 152.1 118 66.1
CSS0016143 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 3.2e-35 151.8 114 74.6
SMO364G0944 Selaginella moellendorffii HOM05D004093 ORTHO05D004981 3.2e-35 151.8 117 65.8
Pp3c20_5000 Physcomitrium patens HOM05D004093 ORTHO05D004981 5.5e-35 151.0 121 63.6
Lj5C222T15 Lonicera japonica HOM05D004093 ORTHO05D004981 1.6e-34 149.4 123 68.3
C09p50660 Brassica napus HOM05D004093 ORTHO05D004981 6.1e-34 147.5 118 68.6
CBR_g7978 Chara braunii HOM05D004093 ORTHO05D004981 1.0e-33 146.7 121 61.2
Peaxi162Scf00016g03248 Petunia axillaris HOM05D004093 ORTHO05D004981 1.0e-33 146.7 120 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2705 Anthoceros agrestis HOM05D004093 ORTHO05D004981 5.1e-33 144.4 118 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2710 Anthoceros agrestis HOM05D004093 ORTHO05D004981 5.1e-33 144.4 118 64.4
BcaB04g19406 Brassica carinata HOM05D004093 ORTHO05D004981 2.6e-32 142.1 114 69.3
Cre09.g390986 Chlamydomonas reinhardtii HOM05D004093 ORTHO05D004981 1.5e-29 132.9 116 57.8
MCO14G538 Micromonas commoda HOM05D004093 ORTHO05D004981 2.0e-29 132.5 115 55.7
ECA233G4634 Erigeron canadensis HOM05D004093 ORTHO05D004981 3.2e-27 125.2 74 81.1
Ca_17304_v3 Cicer arietinum L. HOM05D004093 ORTHO05D004981 9.4e-27 123.6 121 59.5
Hund17142 Selenicereus undatus HOM05D004093 ORTHO05D004981 2.7e-26 122.1 118 61.0
QL11p028781 Quercus lobata HOM05D004093 ORTHO05D004981 6.1e-26 120.9 69 84.1
PRCOL_00006371 Prasinoderma coloniale HOM05D004093 ORTHO05D004981 2.6e-24 115.5 115 50.4
CSS0014733 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 2.4e-22 109.0 91 68.1
arahy.Tifrunner.gnm1.ann1.K8EMZF Arachis hypogaea HOM05D004093 ORTHO05D004981 7.0e-22 107.5 75 72.0
Ciclev10028050m.g Citrus clementina HOM05D004093 ORTHO05D004981 9.1e-14 80.5 47 87.2
Cpa.g.c43557 Carica papaya HOM05D004093 ORTHO05D004981 4.5e-13 78.2 47 85.1
Glyma.08G043900 Glycine max HOM05D004093 ORTHO05D004981 3.8e-12 75.1 47 80.9
Sc20g0001830 Simmondsia chinensis HOM05D004093 ORTHO05D004981 4.2e-11 71.6 45 84.4
Glyma.16G091002 Glycine max HOM05D004093 ORTHO05D004981 6.1e-10 67.8 46 78.3
PRCOL_00006453 Prasinoderma coloniale HOM05D004093 ORTHO05D004981 1.0e-09 67.0 73 49.3
Actinidia00347 Actinidia chinensis HOM05D000203 ORTHO05D000135 8.8e-09 63.9 50 70.0
Nn6g32059 Nelumbo nucifera HOM05D004093 ORTHO05D004981 3.4e-08 62.0 41 73.2
Psat7g009880 Pisum sativum HOM05D004093 ORTHO05D004981 2.8e-07 58.9 43 67.4


User provided reference genes

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