Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 0.0e+00 1086.6 547 100.0
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 2.8e-257 891.7 548 81.9
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 2.2e-254 882.1 564 79.8
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 1.9e-250 869.0 547 78.4
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.8e-240 835.9 564 76.1
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 3.7e-233 811.6 511 78.3
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 1.9e-226 789.3 547 73.9
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 6.9e-224 780.8 550 73.3
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 7.2e-221 770.8 550 72.4
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 2.3e-219 765.8 555 71.0
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.8e-217 758.8 547 71.1
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 8.2e-217 757.3 546 70.1
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 1.1e-216 756.9 547 70.6
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 4.1e-216 755.0 547 70.0
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 1.9e-213 746.1 549 70.5
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 9.4e-213 743.8 547 68.9
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 2.7e-212 742.3 535 69.5
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 7.9e-212 740.7 549 68.7
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.0e-211 740.3 552 68.5
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 1.4e-211 740.0 547 70.9
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.1e-210 736.9 556 68.3
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 3.3e-210 735.3 556 68.3
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 4.8e-209 731.5 550 69.6
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 6.3e-209 731.1 550 68.2
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 1.1e-208 730.3 548 68.1
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.8e-208 729.6 551 68.8
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 4.1e-208 728.4 548 67.5
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 4.1e-208 728.4 549 68.3
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 5.3e-208 728.0 549 68.3
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.2e-207 726.9 553 67.3
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 3.4e-207 725.3 548 68.1
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 3.4e-207 725.3 566 65.9
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 7.7e-207 724.2 548 67.0
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 7.7e-207 724.2 548 66.8
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 2.2e-206 722.6 555 67.9
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 3.8e-206 721.8 548 66.6
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 2.5e-205 719.2 550 67.6
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 3.2e-205 718.8 547 65.8
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 5.5e-205 718.0 550 66.5
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 9.4e-205 717.2 549 67.0
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 1.2e-204 716.8 547 67.3
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 2.7e-204 715.7 549 68.5
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 2.7e-204 715.7 576 65.1
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 4.7e-204 714.9 556 66.7
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 7.9e-204 714.1 550 67.3
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 1.0e-203 713.8 548 67.3
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.8e-203 713.0 547 67.3
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 1.1e-202 710.3 531 68.4
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.5e-202 709.9 556 66.0
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 1.7e-201 706.4 550 66.7
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 2.2e-201 706.1 550 66.4
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 2.8e-201 705.7 563 65.2
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 2.8e-201 705.7 596 62.6
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.1e-200 703.7 551 67.0
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 1.4e-200 703.4 548 66.8
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.8e-200 703.0 557 66.6
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 2.4e-200 702.6 590 62.5
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 3.1e-200 702.2 547 65.4
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 5.3e-200 701.4 536 66.4
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 2.6e-199 699.1 536 67.9
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 7.7e-199 697.6 536 66.0
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.7e-198 696.4 553 65.5
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.7e-198 696.4 549 65.2
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 2.2e-198 696.0 562 64.2
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 3.8e-198 695.3 553 65.1
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 3.8e-198 695.3 553 65.1
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 6.5e-198 694.5 574 63.9
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 7.2e-197 691.0 553 65.1
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 5.2e-195 684.9 543 65.9
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.1e-194 683.7 543 65.4
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 1.3e-193 680.2 550 64.7
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.2e-193 679.5 572 63.1
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 2.8e-193 679.1 535 64.7
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 2.8e-193 679.1 544 64.2
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 3.7e-193 678.7 556 63.5
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 4.8e-193 678.3 548 65.0
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 4.8e-193 678.3 644 57.3
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 3.6e-188 662.1 550 61.6
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 8.8e-187 657.5 547 62.3
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.7e-183 646.0 486 67.9
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.2e-178 630.6 517 63.2
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 1.5e-178 630.2 548 59.9
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 2.8e-177 625.9 510 65.1
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.4e-176 623.6 495 64.6
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 1.0e-174 617.5 490 65.7
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 1.7e-174 616.7 568 56.7
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.8e-174 615.5 563 59.7
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 5.0e-174 615.1 590 57.6
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.3e-173 612.1 465 68.8
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 5.2e-171 605.1 559 58.1
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 1.2e-170 604.0 380 76.6
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 7.5e-170 601.3 555 56.6
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 1.7e-169 600.1 548 59.3
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 1.2e-164 583.9 470 63.2
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.4e-163 580.5 549 59.6
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 2.8e-156 556.2 412 68.0
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.2e-154 550.8 537 58.5
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.2e-151 540.8 437 65.2
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 2.1e-151 540.0 539 53.1
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 8.6e-150 534.6 560 53.9
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 1.2e-135 487.6 562 47.5
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 8.1e-132 474.9 531 52.7
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 2.4e-131 473.4 271 81.2
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 5.3e-131 472.2 275 81.8
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 7.4e-125 451.8 467 54.0
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 3.6e-124 449.5 382 62.0
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 3.9e-118 429.5 346 61.3
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.7e-111 406.8 365 62.5
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.5e-109 401.0 530 47.2
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 3.8e-105 386.3 320 57.2
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 9.1e-99 365.2 217 77.9
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.3e-94 350.5 416 50.2
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 3.0e-86 323.6 415 49.2
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.9e-86 323.2 270 61.5
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 1.7e-84 317.8 186 77.4
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 2.4e-83 313.9 186 79.6
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.6e-82 310.5 557 34.8
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.0e-77 294.3 307 55.7
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 5.3e-75 286.2 532 37.2
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.7e-74 283.9 208 65.9
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.9e-72 277.7 495 36.4
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 1.2e-69 268.5 281 56.2
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 4.8e-68 263.1 312 43.6
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 1.0e-65 255.4 284 54.2
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 9.5e-64 248.8 314 42.4
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 8.8e-62 242.3 140 79.3
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.6e-61 240.7 285 51.9
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.8e-59 234.6 275 51.6
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 2.0e-50 204.5 112 83.0
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.7e-41 174.9 494 30.4
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.0e-41 174.1 244 46.7
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.3e-36 158.7 92 79.3
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.2e-34 152.1 378 27.5
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 7.8e-34 149.4 132 57.6
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 4.3e-32 143.7 82 79.3
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 1.1e-30 139.0 387 27.9
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 5.1e-25 120.2 98 63.3
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 3.4e-21 107.5 62 77.4
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 1.1e-16 92.4 191 33.0
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.4e-14 85.5 55 70.9
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.7e-12 78.6 59 59.3
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 4.3e-08 63.9 171 30.4
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 8.1e-07 59.7 45 62.2


User provided reference genes

Program Settings